DY260483

Overview
NameDY260483
Unique NameDY260483
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1203
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260483 vs. ExPASy Swiss-Prot
Match: RIR2_TOBAC (Ribonucleoside-diphosphate reductase small chain OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 336.265 bits (861), Expect = 2.233e-91
Identity = 165/216 (76.39%), Postives = 181/216 (83.80%), Query Frame = 1
Query:   58 MPSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAEKLIAFACVEGIFFSGSFCRIFLAQKPRVSAGITFLDQF*SPRERAPAAISVAVHCLL 705
            MP IPEEPLLA +PDRFCMFPIQYPQIWEMYKKA ASFWTAEEVDLS D RHWE LT  E+HF+THVLAFFAASDGIVLENLAGRFM EVQVAEARAFYGFQIAIENIHSEMYSLLLE+YIKDSDEK+RLF A+ET PCV KKA WAL WIDGSETFAE+L+AFACVEGIFFSGSFC IF  +K  +  G+TF ++  S  E      +  ++ LL
Sbjct:    1 MPLIPEEPLLASSPDRFCMFPIQYPQIWEMYKKALASFWTAEEVDLSSDTRHWETLTPGERHFITHVLAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMYSLLLESYIKDSDEKSRLFRAVETNPCVEKKAKWALRWIDGSETFAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 216          
BLAST of DY260483 vs. ExPASy Swiss-Prot
Match: RIR2C_ARATH (Ribonucleoside-diphosphate reductase small chain C OS=Arabidopsis thaliana GN=TSO2 PE=2 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 1.268e-86
Identity = 156/217 (71.89%), Postives = 180/217 (82.95%), Query Frame = 1
Query:   58 MPSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWE-ALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAEKLIAFACVEGIFFSGSFCRIFLAQKPRVSAGITFLDQF*SPRERAPAAISVAVHCLL 705
            MPS+PEEPLL P PDRFCMFPI YPQIWEMYKKAEASFWTAEEVDLSQD R WE +L   E+HF+ HVLAFFAASDGIVLENLA RFM++VQV+EARAFYGFQIAIENIHSEMYSLLL+TYIKD+ E++ LF AIET+PCVAKKA WA+ WIDGS+TFAE++IAFACVEGIFFSGSFC IF  +K  +  G+TF ++  S  E      +  ++ LL
Sbjct:    1 MPSMPEEPLLTPTPDRFCMFPIHYPQIWEMYKKAEASFWTAEEVDLSQDNRDWENSLNDGERHFIKHVLAFFAASDGIVLENLASRFMSDVQVSEARAFYGFQIAIENIHSEMYSLLLDTYIKDNKERDHLFRAIETIPCVAKKAQWAMKWIDGSQTFAERIIAFACVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYTLL 217          
BLAST of DY260483 vs. ExPASy Swiss-Prot
Match: RIR2B_ARATH (Putative ribonucleoside-diphosphate reductase small chain B OS=Arabidopsis thaliana GN=RNR2B PE=5 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 2.163e-86
Identity = 154/230 (66.96%), Postives = 185/230 (80.43%), Query Frame = 1
Query:   58 MPSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWE-ALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAEKLIAFACVEGIFFSGSFCRIFLAQKPRVSAGITFLDQF*SPRERAPAAISVAVHCLLAPPPRRGTLNAFI 744
            MPS+PEEP+L P PDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQD R WE +LT DE+HF+ HVLAFFAASDGIVLENL+ RFM++VQ++EARAFYGFQIAIENIHSEMYSLLL+TYIKD+ E++ LF AIET+PCV KKA WA+ WI+GS++FAE+++AFACVEGIFFSGSFC IF  +K  +  G+TF ++  S  E      +  ++ LL        L A +
Sbjct:    1 MPSMPEEPILTPTPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDNRDWENSLTNDERHFIKHVLAFFAASDGIVLENLSTRFMSDVQISEARAFYGFQIAIENIHSEMYSLLLDTYIKDNKERDHLFRAIETIPCVTKKAEWAMKWINGSQSFAERIVAFACVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIYSLLRTKLDEDRLKAIV 230          
BLAST of DY260483 vs. ExPASy Swiss-Prot
Match: RIR2A_ARATH (Ribonucleoside-diphosphate reductase small chain A OS=Arabidopsis thaliana GN=RNR2A PE=1 SV=2)

HSP 1 Score: 288.115 bits (736), Expect = 6.975e-77
Identity = 140/211 (66.35%), Postives = 167/211 (79.15%), Query Frame = 1
Query:   73 EEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAEKLIAFACVEGIFFSGSFCRIFLAQKPRVSAGITFLDQF*SPRERAPAAISVAVHCLL 705
            EEPLL     RF MFPI+Y  IWEMYKKAEASFWTAEEVDLS D++ WEALT  EKHF++H+LAFFAASDGIVLENLA RF+ +VQV EARAFYGFQIA+ENIHSEMYSLLLET+IKDS EK+RLF+AIET+PC++KKA W L+WI    +FA +L+AFACVEGIFFSGSFC IF  +K  +  G+TF ++  S  E      +  ++ LL
Sbjct:   18 EEPLLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDVQQWEALTDSEKHFISHILAFFAASDGIVLENLAARFLNDVQVPEARAFYGFQIAMENIHSEMYSLLLETFIKDSKEKDRLFNAIETIPCISKKAKWCLDWIQSPMSFAVRLVAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 228          
BLAST of DY260483 vs. ExPASy Swiss-Prot
Match: RIR2_VACCA (Ribonucleoside-diphosphate reductase small chain OS=Vaccinia virus (strain Ankara) GN=MVA032L PE=3 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 4.232e-74
Identity = 138/223 (61.88%), Postives = 165/223 (73.99%), Query Frame = 1
Query:   76 EPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAEKLIAFACVEGIFFSGSFCRIFLAQKPRVSAGITFLDQF*SPRERAPAAISVAVHCLLAPPPRRGTLNAFI 744
            EP+LAPNP+RF +FPIQY  IW MYKKAEASFWT EEVD+S+D+  W  LT DEK+F+ HVLAFFAASDGIV ENLA RF TEVQ+ EAR FYGFQ+AIENIHSEMYSLL++TY+KDS+EKN LF+AIET+PCV KKA WA  WI  S  + E+LIAFA VEGIFFSGSF  IF  +K  +  G+TF ++  S  E      +  +   L  PP   T+ + I
Sbjct:    2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIHDSAGYGERLIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLLHPPSEETVRSII 224          
BLAST of DY260483 vs. ExPASy Swiss-Prot
Match: RIR2_RAT (Ribonucleoside-diphosphate reductase subunit M2 OS=Rattus norvegicus GN=Rrm2 PE=2 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 4.232e-74
Identity = 137/202 (67.82%), Postives = 161/202 (79.70%), Query Frame = 1
Query:   61 PSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAEKLIAFACVEGIFFSGSFCRIFLAQKPRVSAGITFLDQF*SPRE 663
            PSI EEPLL  NP RF +FPI+Y  IW+MYKKAEASFWTAEEVDLS+D++HWEAL  DE+HF++HVLAFFAASDGIV ENL  RF  EVQV EAR FYGFQIA+ENIHSEMYSLL++TYIKDS E+  LF+AIET+PCV KKA WAL WI D   T+ E+++AFA VEGIFFSGSF  IF  +K  +  G+TF ++  S  E
Sbjct:   66 PSIEEEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREYLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE 267          
BLAST of DY260483 vs. ExPASy Swiss-Prot
Match: RIR2_VACCW (Ribonucleoside-diphosphate reductase small chain OS=Vaccinia virus (strain Western Reserve) GN=VACWR043 PE=2 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 5.527e-74
Identity = 138/223 (61.88%), Postives = 165/223 (73.99%), Query Frame = 1
Query:   76 EPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAEKLIAFACVEGIFFSGSFCRIFLAQKPRVSAGITFLDQF*SPRERAPAAISVAVHCLLAPPPRRGTLNAFI 744
            EP+LAPNP+RF +FPIQY  IW MYKKAEASFWT EEVD+S+D+  W  LT DEK+F+ HVLAFFAASDGIV ENLA RF TEVQ+ EAR FYGFQ+AIENIHSEMYSLL++TY+KDS+EKN LF+AIET+PCV KKA WA  WI  S  + E+LIAFA VEGIFFSGSF  IF  +K  +  G+TF ++  S  E      +  +   L  PP   T+ + I
Sbjct:    2 EPILAPNPNRFVIFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIHDSAGYGERLIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLLHPPSEETVRSII 224          
BLAST of DY260483 vs. ExPASy Swiss-Prot
Match: RIR2_VACCC (Ribonucleoside-diphosphate reductase small chain OS=Vaccinia virus (strain Copenhagen) GN=F4L PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 7.218e-74
Identity = 138/223 (61.88%), Postives = 165/223 (73.99%), Query Frame = 1
Query:   76 EPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAEKLIAFACVEGIFFSGSFCRIFLAQKPRVSAGITFLDQF*SPRERAPAAISVAVHCLLAPPPRRGTLNAFI 744
            EP+LAPNP+RF +FPIQY  IW MYKKAEASFWT EEVD+S+D+  W  LT DEK+F+ HVLAFFAASDGIV ENLA RF TEVQ+ EAR FYGFQ+AIENIHSEMYSLL++TY+KDS+EKN LF+AIET+PCV KKA WA  WI  S  + E+LIAFA VEGIFFSGSF  IF  +K  +  G+TF ++  S  E      +  +   L  PP   T+ + I
Sbjct:    2 EPILAPNPNRFVIFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIHDSAGYGERLIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLLYPPSEETVRSII 224          
BLAST of DY260483 vs. ExPASy Swiss-Prot
Match: RIR2_MESAU (Ribonucleoside-diphosphate reductase subunit M2 OS=Mesocricetus auratus GN=RRM2 PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 9.427e-74
Identity = 136/208 (65.38%), Postives = 164/208 (78.85%), Query Frame = 1
Query:   43 SALTKMPSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAEKLIAFACVEGIFFSGSFCRIFLAQKPRVSAGITFLDQF*SPRE 663
            S ++  PS+ +EPLL  NP RF +FPI+Y  IW+MYKKAEASFWTAEEVDLS+D++HWEAL  DE+HF++HVLAFFAASDGIV ENL  RF  EVQV EAR FYGFQIA+ENIHSEMYSLL++TYIKDS E+  LF+AIET+PCV KKA WAL WI D   T+ E+++AFA VEGIFFSGSF  IF  +K  +  G+TF ++  S  E
Sbjct:   60 SKVSTNPSVEDEPLLRENPRRFVVFPIEYHDIWKMYKKAEASFWTAEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREYLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE 267          
BLAST of DY260483 vs. ExPASy Swiss-Prot
Match: RIR2_VACCP (Ribonucleoside-diphosphate reductase small chain OS=Vaccinia virus (strain L-IVP) GN=F14 PE=3 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 2.743e-73
Identity = 136/223 (60.99%), Postives = 165/223 (73.99%), Query Frame = 1
Query:   76 EPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAEKLIAFACVEGIFFSGSFCRIFLAQKPRVSAGITFLDQF*SPRERAPAAISVAVHCLLAPPPRRGTLNAFI 744
            EP+LAPNP+RF +FPIQY  IW MYKKAEASFWT EEVD+S+D+  W  +T DEK+F+ HVLAFFAASDGIV ENLA RF TEVQ+ EAR FYGF++AIENIHSEMYSLL++TY+KDS+EKN LF+AIET+PCV KKA WA  WI  S  + E+LIAFA VEGIFFSGSF  IF  +K  +  G+TF ++  S  E      +  +   L  PP   T+ + I
Sbjct:    2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKVTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFRMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIHDSAGYGERLIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLLHPPSEETVRSII 224          
The following BLAST results are available for this feature:
BLAST of DY260483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
RIR2_TOBAC2.233e-9176.39Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2C_ARATH1.268e-8671.89Ribonucleoside-diphosphate reductase small chain C... [more]
RIR2B_ARATH2.163e-8666.96Putative ribonucleoside-diphosphate reductase smal... [more]
RIR2A_ARATH6.975e-7766.35Ribonucleoside-diphosphate reductase small chain A... [more]
RIR2_VACCA4.232e-7461.88Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_RAT4.232e-7467.82Ribonucleoside-diphosphate reductase subunit M2 OS... [more]
RIR2_VACCW5.527e-7461.88Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_VACCC7.218e-7461.88Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_MESAU9.427e-7465.38Ribonucleoside-diphosphate reductase subunit M2 OS... [more]
RIR2_VACCP2.743e-7360.99Ribonucleoside-diphosphate reductase small chain O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP12YK05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260483 ID=DY260483; Name=DY260483; organism=Citrus clementina; type=EST; length=1203bp
CAAAGAAATAGAAAAAAAAACATCTCTCTATTCTCCCGAATTAGTGCGCT
TACCAAAATGCCCTCGATTCCCGAAGAGCCGCTCCTAGCCCCAAATCCCG
ATCGATTTTGCATGTTCCCGATTCAGTACCCACAAATTTGGGAAATGTAC
AAGAAAGCCGAAGCGTCGTTTTGGACTGCTGAGGAAGTTGATCTTTCGCA
AGATCTCCGCCACTGGGAGGCCCTAACCGCTGACGAGAAGCACTTCGTCA
CGCACGTGCTCGCCTTCTTCGCAGCCTCCGACGGCATCGTCCTCGAGAAC
CTCGCCGGAAGGTTCATGACGGAGGTCCAGGTCGCCGAGGCTCGCGCCTT
CTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACTCGC
TGCTTCTAGAAACTTACATCAAAGACTCCGACGAAAAGAACCGTCTCTTT
CACGCCATCGAGACGGTTCCCTGCGTCGCAAAGAAAGCCACGTGGGCGTT
AAATTGGATCGACGGCTCGGAGACTTTCGCGGAGAAATTAATCGCGTTTG
CTTGCGTGGAGGGGATTTTCTTCTCAGGAAGTTTTTGCCGGATATTTCTG
GCCCAAAAGCCGCGGGTTAGTGCCGGGATTACATTCCTAGACCAATTTTG
ATCTCCGAGAGAGAGGGCCCCCGCGGCAATCTCCGTGGCTGTTCATTGCT
TACTTGCGCCCCCACCTCGACGCGGGACACTCAACGCCTTTATCCTCTCG
GGCCGCTGACCCACACACAGAAGCTCCGATTGCCACCCCCGCCCCGGCCC
GTGGGGCGCCCACACTCCCAACCTACCAATCGTCGCCGCCCACCCCTGCC
CGCGCCGATTGTTGACTCTTTCCGGGATTGCCCGGGTTAGCCGTCCGGCG
ATGCCTTCAGTCACAGGGTCCCCCCTTTGAGGCCCCACACCCCGATCTCA
CCCCCTGCCCTTGATCCCACGCCGCTCTTACCGCTCCAGCCCAGCCCGCT
CCCCTAGCTCCTCCCAGCTGTCTCGCGCCCCCGCCTCCCACACACAGTAA
CCATCTCGTCCACACCTTCTCCGATTAGATCCTCCTGTGCCGCACCGTAC
CCCCTCTCGCACTAACCTCCCAACCTGCGCACACCGCAATCGTGTCTACT
CACTAGGCCAACGCATACCACGCGCCGCACCCCACCCCCCCCGTACGCCA
ACG
back to top