DY260488

Overview
NameDY260488
Unique NameDY260488
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1272
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260488 vs. ExPASy Swiss-Prot
Match: SYK_ARATH (Lysyl-tRNA synthetase OS=Arabidopsis thaliana GN=At3g11710 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 3.850e-57
Identity = 128/243 (52.67%), Postives = 152/243 (62.55%), Query Frame = 2
Query:   23 MEGSVDETAKAVSNLAVDSSSSDPAAGEETISKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPQ--SQKP-AADDEDMDPTQYLENRKRYLEIQKKEGKNPYPHKFFVSMSIIEYIANYGGLGNGDHLEDISVSLAGRIMSKRSSSSKLFFYDLHGGGAKVQVMADASKSDMDEVEFSKFHASVKRGDIVGVTGFPGKTKRGEP*PSFPKSFVVLSPCSH-MNA*GKNLGGNKPNV 739
            MEG+ D+T KA+S LA+DSS++  AA                                          +P+  SQK  AADDE+MD TQY ENR +YL  +K +G+NPYPHKF VSMSI +YI  YG L NGDH+E+   SLAGRIMSKRSSSSKLFFYDLHG   KVQVMADASKS +DE EF K H++ KRGDIVGV GFPGKTKRGE    FP+SF++LS C H M     N+   KP +
Sbjct:    1 MEGAADQTTKALSELAMDSSTTLNAAESSAGDGAGPRSKNALKKEQKMKQKEEEKRRKDEEKAEKAKQAPKASSQKAVAADDEEMDATQYYENRLKYLAAEKAKGENPYPHKFAVSMSIPKYIETYGSLNNGDHVENAEESLAGRIMSKRSSSSKLFFYDLHGDDFKVQVMADASKSGLDEAEFLKLHSNAKRGDIVGVIGFPGKTKRGEL-SIFPRSFILLSHCLHMMPRKADNVNAKKPEI 242          
BLAST of DY260488 vs. ExPASy Swiss-Prot
Match: SYK_ORYSJ (Lysyl-tRNA synthetase OS=Oryza sativa subsp. japonica GN=Os03g0586800 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 1.373e-46
Identity = 93/165 (56.36%), Postives = 119/165 (72.12%), Query Frame = 2
Query:  239 QKPAADDEDMDPTQYLENRKRYLEIQKKEGKNPYPHKFFVSMSIIEYIANYGGLGNGDHLEDISVSLAGRIMSKRSSSSKLFFYDLHGGGAKVQVMADASKSDMDEVEFSKFHASVKRGDIVGVTGFPGKTKRGEP*PSFPKSFVVLSPCSHMNA*GKNLGGNKP 733
            ++ AADDE+MDPTQY ENR + L+  K  G NPYPHKF  ++++ +YI  Y  +  GD L D++  LAGRIM+KR+ SSKL FYDL+GGG KVQV ADA  S++++ EF KFH+++KRGDIVGV G+PGK+KRGE    FPK  VVLSPC HM    K+ G   P
Sbjct:   68 KESAADDEEMDPTQYYENRLKALDSLKATGVNPYPHKFLANITVADYIEKYKSMNVGDKLVDVTECLAGRIMTKRAQSSKLLFYDLYGGGEKVQVFADARTSELEDNEFIKFHSTLKRGDIVGVCGYPGKSKRGEL-SIFPKKIVVLSPCLHMMPRQKSEGSAVP 231          
BLAST of DY260488 vs. ExPASy Swiss-Prot
Match: SYK_SOLLC (Lysyl-tRNA synthetase OS=Solanum lycopersicum GN=LYSRS PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.982e-45
Identity = 87/148 (58.78%), Postives = 116/148 (78.38%), Query Frame = 2
Query:  254 DDEDMDPTQYLENRKRYLEIQKKEGKNPYPHKFFVSMSIIEYIANYGGLGNGDHLEDISVSLAGRIMSKRSSSSKLFFYDLHGGGAKVQVMADASKSDMDEVEFSKFHASVKRGDIVGVTGFPGKTKRGEP*PSFPKSFVVLSPCSHM 697
            +++D+DPTQYL NR R +E  ++ G NPYPHKFF++MSI E+I+ Y  L  G+  EDI +SLAGR++SKR+SSSKL+FY+L GGGA+VQV+A A  SD+D V+FS + + VKRGDI+GV G+PGK+KRGE    F K F+VL+PC HM
Sbjct:   48 ENDDLDPTQYLANRLRNIESLRESGINPYPHKFFITMSIPEFISRYAHLNTGEFPEDIDMSLAGRVISKRASSSKLYFYELLGGGARVQVLASARDSDVDAVQFSNYQSGVKRGDIIGVRGYPGKSKRGEL-SIFAKPFIVLAPCLHM 194          
BLAST of DY260488 vs. ExPASy Swiss-Prot
Match: SYK_MOUSE (Lysyl-tRNA synthetase OS=Mus musculus GN=Kars PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 2.513e-32
Identity = 70/149 (46.98%), Postives = 100/149 (67.11%), Query Frame = 2
Query:  251 ADDEDMDPTQYLENRKRYLEIQKKEGKNPYPHKFFVSMSIIEYIANYGGLGNGDHLEDISVSLAGRIMSKRSSSSKLFFYDLHGGGAKVQVMADASKSDMDEVEFSKFHASVKRGDIVGVTGFPGKTKRGEP*PSFPKSFVVLSPCSHM 697
            A++E +DP QY + R + ++  K  G++PYPHKF V +S+ ++I  Y  L  GDHL D+++ +AGRI +KR+S  KL FYDL G G K+QVMA+ S++   E EF   +  ++RGDI+GV G PGKTK+GE     P+   +LSPC HM
Sbjct:   64 AEEETLDPNQYYKIRSQAVQQLKVTGEDPYPHKFHVDISLTQFIQEYSHLQPGDHLTDVTLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMAN-SRNYKSEEEFVHINNKLRRGDIIGVEGNPGKTKKGEL-SIIPQEITLLSPCLHM 210          
BLAST of DY260488 vs. ExPASy Swiss-Prot
Match: SYK_CRIGR (Lysyl-tRNA synthetase OS=Cricetulus griseus GN=KARS PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 5.599e-32
Identity = 70/148 (47.30%), Postives = 98/148 (66.22%), Query Frame = 2
Query:  254 DDEDMDPTQYLENRKRYLEIQKKEGKNPYPHKFFVSMSIIEYIANYGGLGNGDHLEDISVSLAGRIMSKRSSSSKLFFYDLHGGGAKVQVMADASKSDMDEVEFSKFHASVKRGDIVGVTGFPGKTKRGEP*PSFPKSFVVLSPCSHM 697
            ++E +DP QY + R + +   K  G++PYPHKF V +S+ ++I  Y  L  GDHL DI++ +AGRI +KR+S  KL FYDL G G K+QVMA+ S++   E EF + +  ++RGDI+GV G PGKTK+GE     P    +LSPC HM
Sbjct:   67 EEETLDPNQYYKIRSQAIHQLKVSGEDPYPHKFHVDISLTQFIQEYSQLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMAN-SRNYKSEEEFVRINNKLRRGDIIGVQGNPGKTKKGEL-SIIPYEITLLSPCLHM 212          
BLAST of DY260488 vs. ExPASy Swiss-Prot
Match: SYK_HUMAN (Lysyl-tRNA synthetase OS=Homo sapiens GN=KARS PE=1 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 1.247e-31
Identity = 70/148 (47.30%), Postives = 97/148 (65.54%), Query Frame = 2
Query:  254 DDEDMDPTQYLENRKRYLEIQKKEGKNPYPHKFFVSMSIIEYIANYGGLGNGDHLEDISVSLAGRIMSKRSSSSKLFFYDLHGGGAKVQVMADASKSDMDEVEFSKFHASVKRGDIVGVTGFPGKTKRGEP*PSFPKSFVVLSPCSHM 697
            ++E +DP QY + R + +   K  G++PYPHKF V +S+ ++I  Y  L  GDHL DI++ +AGRI +KR+S  KL FYDL G G K+QVMA+ S++   E EF   +  ++RGDI+GV G PGKTK+GE     P    +LSPC HM
Sbjct:   67 EEESVDPNQYYKIRSQAIHQLKVNGEDPYPHKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMAN-SRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGEL-SIIPYEITLLSPCLHM 212          
BLAST of DY260488 vs. ExPASy Swiss-Prot
Match: SYKC_SCHPO (Lysyl-tRNA synthetase, cytoplasmic OS=Schizosaccharomyces pombe GN=krs1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 7.567e-29
Identity = 64/152 (42.11%), Postives = 102/152 (67.11%), Query Frame = 2
Query:  257 DEDMDPTQYLENRKR-YLEIQKKEGKNPYPHKFFVSMSIIEYIANYGGLGNGDHLEDISVSLAGRIMSKRSSSSKLFFYDLHGGGAKVQVMADASKSDMDEVEFSKFHASVKRGDIVGVTGFPGKTK---RGEP*PS-FPKSFVVLSPCSHM 697
            +ED+DP+QY ENR R  +E+++ +  NPYPHKF V++++ E+IA Y GL  G+   ++ V++AGR++  R++ +KL FY++H  G K+QVM  A   D D V+F+  H  ++RGDI+G+ G+PG++    R +   S F +  V+LSPC  M
Sbjct:   67 EEDLDPSQYFENRSRTIMELRQTKDPNPYPHKFQVTITLPEFIAKYEGLARGETKPEVEVAVAGRVLGLRTAGNKLRFYEIHADGKKLQVMCQA--QDADTVDFAAQHEHLRRGDIIGIRGYPGRSNPKGRADGELSIFARQCVLLSPCLRM 216          
BLAST of DY260488 vs. ExPASy Swiss-Prot
Match: SYK_CAEEL (Lysyl-tRNA synthetase OS=Caenorhabditis elegans GN=krs-1 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 4.152e-27
Identity = 67/152 (44.08%), Postives = 92/152 (60.53%), Query Frame = 2
Query:  242 KPAADDEDMDPTQYLENRKRYLEIQKKEGKNPYPHKFFVSMSIIEYIANYGGLGNGDHLEDISVSLAGRIMSKRSSSSKLFFYDLHGGGAKVQVMADASKSDMDEVEFSKFHASVKRGDIVGVTGFPGKTKRGEP*PSFPKSFVVLSPCSHM 697
            K   + +  DP +Y   R R +E ++  G NP+PHKF V++S+ ++I  Y  L     +E+I VS+AGRI SKR S SKL FYD+HG G  +Q+MA+A K    +V+F   H  +KRGDIVG TG   +TK GE     P   + L+PC HM
Sbjct:   43 KVVREADPSDPQEYFNMRVRMIEARRAAGDNPFPHKFNVTISLTDFITKYTPLEKEQVVEEI-VSVAGRIHSKRESGSKLVFYDIHGEGTHIQIMANA-KFHTGDVDFVTLHDRIKRGDIVGFTGRATRTKAGEL-SLIPNEILQLTPCLHM 191          
BLAST of DY260488 vs. ExPASy Swiss-Prot
Match: SYKC_YEAST (Lysyl-tRNA synthetase, cytoplasmic OS=Saccharomyces cerevisiae GN=KRS1 PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 4.152e-27
Identity = 74/161 (45.96%), Postives = 97/161 (60.25%), Query Frame = 2
Query:  230 PQSQKPAADDEDMDPTQYLENRKRYL-EIQKKEGKNPYPHKFFVSMSIIEYIANYGGLGNGDHLEDISVSLAGRIMSKRSSSSKLFFYDLHGGGAKVQVMADASKSDMDEVEFSKFHASVKRGDIVGVTGFPGKT---KRGEP*PS-FPKSFVVLSPCSHM 697
            P S+K      D+DP+QY E R R + E++K    NPYPHKF VS+S  E++A Y  L  G+ L +  VS+AGRI +KR S SKL FY LHG G +VQ+M+   +   D   + K H  +KRGDIVGV G+ G+T   K GE   S F     +L+PC HM
Sbjct:   56 PASKKKTDLFADLDPSQYFETRSRQIQELRKTHEPNPYPHKFHVSISNPEFLAKYAHLKKGETLPEEKVSIAGRIHAKRESGSKLKFYVLHGDGVEVQLMSQL-QDYCDPDSYEKDHDLLKRGDIVGVEGYVGRTQPKKGGEGEVSVFVSRVQLLTPCLHM 215          
BLAST of DY260488 vs. ExPASy Swiss-Prot
Match: SYK_THELT (Lysyl-tRNA synthetase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=lysS PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.293e-11
Identity = 43/135 (31.85%), Postives = 73/135 (54.07%), Query Frame = 2
Query:  284 LENRKRYLEIQKKEGKNPYPHKFFVSMSIIEYIANYGGLGNGDHLEDISVSLAGRIMSKRSSSSKLFF--YDLHGGGAKVQVMADASKSDMDEVEFSKFHASVKRGDIVGVTGFPGKTKRGEP*PSFPKSFVVLS 682
            L  R + +E  +K G NPYP+KF  + +       +  L  G+ L+D  +S AGR+M+ R      FF   D +G     ++ A   ++++ E +++ F   +  GDI+G+TGFP K++ GE    + K+F +LS
Sbjct:    6 LSQRAKEVEELRKLGVNPYPYKFEKTHTTKTIQEKFQALQPGEVLQDEEISTAGRVMTVRLHGKSCFFTIKDFYG-----RIQAYIRQNEISEEKYNLFKKYIAPGDIIGITGFPFKSRTGEL-TVYVKNFQLLS 134          
The following BLAST results are available for this feature:
BLAST of DY260488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
SYK_ARATH3.850e-5752.67Lysyl-tRNA synthetase OS=Arabidopsis thaliana GN=A... [more]
SYK_ORYSJ1.373e-4656.36Lysyl-tRNA synthetase OS=Oryza sativa subsp. japon... [more]
SYK_SOLLC1.982e-4558.78Lysyl-tRNA synthetase OS=Solanum lycopersicum GN=L... [more]
SYK_MOUSE2.513e-3246.98Lysyl-tRNA synthetase OS=Mus musculus GN=Kars PE=1... [more]
SYK_CRIGR5.599e-3247.30Lysyl-tRNA synthetase OS=Cricetulus griseus GN=KAR... [more]
SYK_HUMAN1.247e-3147.30Lysyl-tRNA synthetase OS=Homo sapiens GN=KARS PE=1... [more]
SYKC_SCHPO7.567e-2942.11Lysyl-tRNA synthetase, cytoplasmic OS=Schizosaccha... [more]
SYK_CAEEL4.152e-2744.08Lysyl-tRNA synthetase OS=Caenorhabditis elegans GN... [more]
SYKC_YEAST4.152e-2745.96Lysyl-tRNA synthetase, cytoplasmic OS=Saccharomyce... [more]
SYK_THELT9.293e-1131.85Lysyl-tRNA synthetase OS=Thermotoga lettingae (str... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP12YK10FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260488 ID=DY260488; Name=DY260488; organism=Citrus clementina; type=EST; length=1272bp
CCTCTCCTTCACACCGACCAAAATGGAAGGGTCTGTTGACGAAACAGCGA
AAGCTGTCTCGAACTTAGCCGTGGATTCATCTTCATCTGATCCCGCAGCT
GGAGAAGAAACCATCAGCAAAAATGCACGCAAGAAGGAACTGAAAATGAA
GCAGAAAGAGGAGGAAAGGCGACGTAAAGAAGAGGAGAAGCGGCAGAAAG
AGGCTGAGAGGGCTGCCACCAAGGCAAGCCCCCAAAGTCAGAAACCGGCT
GCTGATGATGAGGATATGGATCCAACGCAATATCTTGAGAATAGGAAGAG
GTATTTGGAGATTCAGAAGAAAGAGGGAAAAAATCCATATCCCCATAAAT
TTTTTGTGTCAATGTCCATCATTGAATATATAGCAAACTATGGAGGTTTA
GGCAATGGGGATCATCTTGAGGACATCTCAGTATCATTGGCAGGAAGAAT
CATGAGCAAACGATCTTCTTCATCAAAGCTTTTCTTTTATGATTTGCATG
GTGGGGGTGCTAAAGTACAAGTTATGGCTGATGCAAGCAAATCAGACATG
GATGAAGTGGAATTCTCTAAGTTTCATGCTAGTGTGAAACGTGGTGATAT
AGTTGGCGTCACAGGGTTTCCAGGAAAAACTAAAAGAGGGGAACCTTAAC
CATCCTTTCCAAAATCATTTGTAGTTTTATCCCCTTGTTCCCATATGAAT
GCCTAAGGCAAAAACCTGGGGGGGAATAAGCCCAACGTACAGAAAATTTG
ATGCCTGGGCCCCTGGCAAGTCACACGCACTCCTCCAAACCCACACTCGT
ACACAACCCCGACCCCTCCACTCCCCCCCCCCCCTCCGGATTTCAACCCA
CAACCCGCAGCTCCCACCCAAACTCACCCCCCAACCCACGGCGGTGTGCA
CATAACCACGACAAACTCCGGCACCACCACCATCCCCGGCGGGCCGAACA
ACCCCACCACTCCAACCCACCCCTTCACCCACGCCCTACTCTCCCCTTTC
TCTTAACCCCCGCAATCCCCTCCTCCCCTCACCTCCCTCCCACATCCGAC
TCCACCCACTCCCTTACTCCACCCTGACCTACTCTCCTCCCCACCCACTA
CTCCCACCCTTCCTTCCTCCACACCACATCCACCCCACCCCTACCCGCTC
CCCTCCCCCCATTACATCACCACCCACCCCCACCTCCACCCCGTCCACCC
CCTCCCACACCCATTCGCACACCCCCATGGCTCCATACTTCGTACATACC
ACCCCTATTCCATCCTCACCAC
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