DY260492

Overview
NameDY260492
Unique NameDY260492
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1273
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260492 vs. ExPASy Swiss-Prot
Match: ZN363_HUMAN (RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens GN=RCHY1 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 9.559e-40
Identity = 78/199 (39.20%), Postives = 103/199 (51.76%), Query Frame = 1
Query:    1 EIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFQTRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPKPYPNKKVWILC 597
            +++ CR CH         D    H + R +V +V C  C   Q  QQ C  C    GEY+C+ C LFD D  KKQYH             +FFHC KC  C +M L+  H C+E     +CP+C E +  +R    VLPCGH +H+ C +EM +   Y CP+C  S  DM++ W + D E+A TPMP  Y N  V ILC
Sbjct:   36 KLYTCRLCH---------DNNEDHQLDRFKVKEVQCINCEKIQHAQQTCEECSTLFGEYYCDICHLFDKD--KKQYHCENCGICRIGPKEDFFHCLKCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK-EGYRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILC 222          
BLAST of DY260492 vs. ExPASy Swiss-Prot
Match: ZN363_MOUSE (RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.057e-38
Identity = 76/199 (38.19%), Postives = 102/199 (51.26%), Query Frame = 1
Query:    1 EIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFQTRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPKPYPNKKVWILC 597
            +++ CR CH         D    H + R +V +V C  C   Q  QQ C +C    GEY+C  C LFD D  K+QYH             +FFHC KC  C +  L+  H C+E     +CP+C E +  +R    VLPCGH +H+ C +EM +   Y CP+C  S  DM++ W + D E+A TPMP  Y N  V ILC
Sbjct:   36 KLYTCRLCH---------DTNEDHQLDRFKVKEVQCINCEKLQHAQQTCEDCSTLFGEYYCSICHLFDKD--KRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK-EGYRCPLCMHSALDMTRYWRQLDTEVAQTPMPSEYQNVTVDILC 222          
BLAST of DY260492 vs. ExPASy Swiss-Prot
Match: YERG_SCHPO (Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe GN=SPAC2F3.16 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 4.156e-35
Identity = 70/199 (35.18%), Postives = 103/199 (51.76%), Query Frame = 1
Query:    1 EIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXX--NFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFQTRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPKPYPNKKVWI 591
            E + CRHCHN+A +         H + R  V  ++C +C   Q   Q C  C  CMG Y+C  CKL+DDD +K  YH               ++FHC  C  C  + + N+H C+E +   +CP+C EY+F +R+ VI L C H +H+ C +E    + Y CP C K++ +++ ++   D EI   PMP PY     WI
Sbjct:  158 EWYTCRHCHNDACD---------HVLERPAVENMLCMICSKVQPAAQYCKYCKNCMGRYYCNKCKLWDDDPNKSSYHCDDCGICRIGRGLGDDYFHCKTCGLCLPISVFNTHRCIERSTDCNCPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRTN-YRCPTCYKTIINVNSLFRILDMEIERQPMPYPY---NTWI 343          
The following BLAST results are available for this feature:
BLAST of DY260492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ZN363_HUMAN9.559e-4039.20RING finger and CHY zinc finger domain-containing ... [more]
ZN363_MOUSE1.057e-3838.19RING finger and CHY zinc finger domain-containing ... [more]
YERG_SCHPO4.156e-3535.18Uncharacterized RING finger protein C2F3.16 OS=Sch... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP12YK16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260492 ID=DY260492; Name=DY260492; organism=Citrus clementina; type=EST; length=1273bp
GAGATCTTTGATTGTCGTCACTGTCATAACGAGGCAATGAATAATATTAA
TGTTGATCAGAAGCTTAGGCATGACATTCCGCGGCATGAAGTCAACCAGG
TGATATGTTCGCTCTGTGGCACTGAACAAAAGGTTCAGCAAGTTTGTGTT
AATTGTGGTGTATGCATGGGTGAATACTTCTGCGAGAGTTGCAAGCTGTT
TGATGATGATACATCCAAGAAGCAATATCATTGTGATGGATGTGGAATAT
GCAGGATTGGTGGATGTGATAATTTCTTCCATTGCAACAAGTGTAGATGC
TGCTACTCAATGCTTTTGAAGAACAGCCACCCATGTGTAGAAGGTGCAAT
GCATCATGACTGCCCTGTCTGCTGTGAGTATTTATTCCAGACAAGACAGG
ATGTAATTGTCTTGCCGTGTGGGCATACCATTCACAAAAATTGCTTGAAG
GAGATGCGGGAACATCATCAATATGCCTGTCCTATCTGCTCCAAGTCAGT
CTGTGATATGTCCAAAGTATGGGAGAAATATGACAGGGAGATAGCGGCTA
CTCCAATGCCAAAACCTTACCCTAATAAAAAGGTTTGGATCCTTTGCCAA
TGACTGTGGTAAGACCCCTAATGTCCCATTCCATGTGCCTGCCCCCAAAT
TGCCCCAACCGCAAGTCCCCACCACACCCGCTTGGCCCGGCGCCGAACCC
CGGGCCCTCATGGTACCCATAATGCCCAAGGTGCACAGGAACCCCCATGA
CAGCAGTGAACGGGACTCCGATCTAATTAGATTTTTACGCCTCCTCCCCC
CCCCTTGTCTATTCCTTATCCACCAACCCTCAGAACCCTCCACACACCTC
CCACCGCCACCACATCCCTCCCCCCCTCCTCCCCATTCCACCCACCACCA
GACCCCCAAAACCCACCCCCCCGTAGACCACCCCCCACCTAACAACCAAC
CCACCACCACACCTGCACAATCAACAAGAACACCCCCCTCGCACTCCTCG
CCCCCCTACCCACCCTACTCCCACCTCCCATCCCCCTATCCATACGCCCC
AAACCTCACACTACCCGCCCCCCCTTCACTAGCCCCCCCACCTCCCCCCT
AGCCCCCTCCGACCCGATCTCTCGCCACTCGCCTTCCCTCCCCCCCTTCT
CCCCCACACACCTCCCGCACCCAACCAATACATCCCACACCCCAGCCCCC
ACCCCCCCTCCACTTCATCACCCCCCTCCTAGCCACCCCACTGACCCCTC
CTGCCACCCATCAACCCTTCCTC
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