DY260493

Overview
NameDY260493
Unique NameDY260493
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1176
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260493 vs. ExPASy Swiss-Prot
Match: TAF12_XENLA (Transcription initiation factor TFIID subunit 12 OS=Xenopus laevis GN=taf12 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 5.802e-12
Identity = 30/57 (52.63%), Postives = 43/57 (75.44%), Query Frame = 3
Query:    3 LAKHLKSDTLEAKDILVHLERNWNMTLPGFSGDEIKTFRKPLVCDIHKERLAAIKKS 173
            LA+H KS+TLE KD+ +HLER WNM +PGF  +EI+ ++K    + HK+R+A IKK+
Sbjct:  105 LARHRKSNTLEVKDVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIKKT 161          
BLAST of DY260493 vs. ExPASy Swiss-Prot
Match: TAF12_DICDI (Transcription initiation factor TFIID subunit 12 OS=Dictyostelium discoideum GN=TAF12 PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 9.897e-12
Identity = 34/68 (50.00%), Postives = 48/68 (70.59%), Query Frame = 3
Query:    3 LAKHLKSDTLEAKDILVHLERNWNMTLPGFSG-DEIKTFRKPLVCDIHKERLAAIKKSVMATEVASAR 203
            LAKH  S TLE KD+  HLE+NWN+ +PGF   ++ KTF+KP   + HK R+AA+KKS+  T+ +S +
Sbjct:  486 LAKHRNSTTLEVKDLQCHLEKNWNIRVPGFGNVEQYKTFKKPHFPENHKLRVAAMKKSIALTQASSRK 553          
BLAST of DY260493 vs. ExPASy Swiss-Prot
Match: TAF12_MOUSE (Transcription initiation factor TFIID subunit 12 OS=Mus musculus GN=Taf12 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.688e-11
Identity = 29/57 (50.88%), Postives = 42/57 (73.68%), Query Frame = 3
Query:    3 LAKHLKSDTLEAKDILVHLERNWNMTLPGFSGDEIKTFRKPLVCDIHKERLAAIKKS 173
            LA+H KS TLE KD+ +HLER WNM +PGF  +EI+ ++K    + HK+R+A I+K+
Sbjct:  102 LARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKT 158          
BLAST of DY260493 vs. ExPASy Swiss-Prot
Match: TAF12_HUMAN (Transcription initiation factor TFIID subunit 12 OS=Homo sapiens GN=TAF12 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.688e-11
Identity = 29/57 (50.88%), Postives = 42/57 (73.68%), Query Frame = 3
Query:    3 LAKHLKSDTLEAKDILVHLERNWNMTLPGFSGDEIKTFRKPLVCDIHKERLAAIKKS 173
            LA+H KS TLE KD+ +HLER WNM +PGF  +EI+ ++K    + HK+R+A I+K+
Sbjct:  102 LARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKT 158          
BLAST of DY260493 vs. ExPASy Swiss-Prot
Match: TAF12_BOVIN (Transcription initiation factor TFIID subunit 12 OS=Bos taurus GN=TAF12 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.688e-11
Identity = 29/57 (50.88%), Postives = 42/57 (73.68%), Query Frame = 3
Query:    3 LAKHLKSDTLEAKDILVHLERNWNMTLPGFSGDEIKTFRKPLVCDIHKERLAAIKKS 173
            LA+H KS TLE KD+ +HLER WNM +PGF  +EI+ ++K    + HK+R+A I+K+
Sbjct:  102 LARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKT 158          
BLAST of DY260493 vs. ExPASy Swiss-Prot
Match: TAF12_YEAST (Transcription initiation factor TFIID subunit 12 OS=Saccharomyces cerevisiae GN=TAF12 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.415e-11
Identity = 34/75 (45.33%), Postives = 51/75 (68.00%), Query Frame = 3
Query:    3 LAKHLKSDTLEAKDILVHLERNWNMTLPGFSGDEIKTFRKPLVCDIHKERLAAIKKSVMATEVASARTTGGQTAA 227
            LAKH KSD LEA+DI +HLERNWN+ +PG+S DEI++ RK      + ++L    +S+ + +VA+A+  G   A+
Sbjct:  464 LAKHRKSDNLEARDIQLHLERNWNIRIPGYSADEIRSTRKWNPSQNYNQKL----QSITSDKVAAAKNNGNNVAS 534          
The following BLAST results are available for this feature:
BLAST of DY260493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
TAF12_XENLA5.802e-1252.63Transcription initiation factor TFIID subunit 12 O... [more]
TAF12_DICDI9.897e-1250.00Transcription initiation factor TFIID subunit 12 O... [more]
TAF12_MOUSE1.688e-1150.88Transcription initiation factor TFIID subunit 12 O... [more]
TAF12_HUMAN1.688e-1150.88Transcription initiation factor TFIID subunit 12 O... [more]
TAF12_BOVIN1.688e-1150.88Transcription initiation factor TFIID subunit 12 O... [more]
TAF12_YEAST6.415e-1145.33Transcription initiation factor TFIID subunit 12 O... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP12YK17FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260493 ID=DY260493; Name=DY260493; organism=Citrus clementina; type=EST; length=1176bp
CATTAGCTAAGCATCTTAAATCAGATACATTGGAAGCAAAAGACATACTT
GTACATCTTGAAAGAAATTGGAATATGACACTTCCTGGGTTTAGTGGTGA
TGAGATCAAGACCTTCAGAAAACCACTTGTATGTGATATCCACAAGGAGC
GGCTTGCTGCAATAAAGAAATCAGTCATGGCAACTGAGGTTGCAAGTGCT
AGGACTACGGGTGGACAAACTGCCGCCAGTGCAAAGGGTAACCTGGGGAA
GATGCCTGCTAATATCATTGGCTCTACCTGAGGCATTTTCTAGTGGGGTA
TGTTAAGGGAATCAATAACTCCTTGTTTTTTATTTATATGTACTAGATGA
TTTAGTTGTATATTCTTGATAGGTTGCTTTTATCCTTAAGTTTGTAGGTT
TGCCGATGTCCCACAAGATTAGATTTTAGAATCTATTCTGTTAATGGATT
TGACCCTTTTGCCTAGGCTGAATTACCTTTGGAGGAATGAGTACCGGTCC
AATTAAAGTACCAAATCCTCATTTTAATGAACTATCGCTCACACTCATCT
ACTCCCCCCCGTACACCATCAACACACAAAACAAGACCACACCCCACCAC
TACTGCATCAACAATCGGCACATACACCCACCCTCCGCTCGCCACACTCT
TCCCACACCCGCATCCCCACTCGCAAACACAACACGCGTTACCTCCCACC
TATCACCTTCCCCCAAGACCCGCACACCACAAACTCTCCTCCCCCACCCC
CCCCACCTCCCCTCCGCCACCTCTCCACACCCACCCTGCTCCACCTCCCC
ACCCCAATCTCCACCCATCGCCTGCATATCCTCCAGCCTTTCACCCAATA
TCCCATCTCCCCAACACTCCCCACACTCTCCCAACCACCCCCTTCGCATA
CACTACCAAACCACCCCTCCTCCGCACCCCTCCCCAAGCCTCCCCCCCTC
CGCCGCCACCCTCCTTCCAGCCGCAACACCTCCACCCTCCCCCCCATCAC
ACACTCAATCACCCCCTCCCCCAATCACCTCCCCCCCTCACCCACCATAC
TTCACAGCATTCATACAACCCACACACCACCCACTTCCCCGCCCCCCCAC
CACCCTTGCCCCACCACCCCTCTTCACCCGCTCTTGCCTCCCCCACCCCT
TCCCTCAAACTACCCTTCTTTCCTCA
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