DY260502

Overview
NameDY260502
Unique NameDY260502
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1254
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260502 vs. ExPASy Swiss-Prot
Match: PINH_ARATH (Protein PINHEAD OS=Arabidopsis thaliana GN=At5g43810 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.274e-43
Identity = 107/216 (49.54%), Postives = 121/216 (56.02%), Query Frame = 3
Query:  228 MPIRQMKDSSEQHLVIKTHLQNTMNQSQKQPKTAQNGKGPPHQ-------------ELQNSKPHNQTSPPTKNXXXXXXXXXXKSDQNDVFMRPSSRPCTVAHKPVNQVCDLXXXXXXXXXXXXRSLCATEMGFPTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVGSRTVNRAIMAEPVRA*QESDLRMRLPA*GGRK 836
            MPIRQMKDSSE HLVIKT      N     PKT QNGK PP               + Q S P    SPP+KN          KSDQ DV MRPSSRP             +              +   +MG     K+ +FAPRPG+G +GTKCIVKANHF A+LP KDLNQYDVTITPEV S++VNRAI+AE VR  +ESDL  RLPA  GRK
Sbjct:    1 MPIRQMKDSSETHLVIKTQPLKHHN-----PKTVQNGKIPPPSPSPVTVTTPATVTQSQASSP----SPPSKNRSRRRNRGGRKSDQGDVCMRPSSRPRKPPPPSQTTSSAVSVATAGEIVAVNHQM---QMGV---RKNSNFAPRPGFGTLGTKCIVKANHFLADLPTKDLNQYDVTITPEVSSKSVNRAIIAELVRLYKESDLGRRLPAYDGRK 201          

HSP 2 Score: 33.113 bits (74), Expect = 1.274e-43
Identity = 14/29 (48.28%), Postives = 17/29 (58.62%), Query Frame = 2
Query:  854 GELPFVWKESKINLVKETGGDQGSPKVEK 940
            GELPF WKE  + +V E  G    PK E+
Sbjct:  207 GELPFTWKEFSVKIVDEDDGIINGPKRER 235          

HSP 3 Score: 21.9422 bits (45), Expect = 1.274e-43
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1
Query:  826 EGEKSLYTAGGTSF 867
            +G KSLYTAG   F
Sbjct:  198 DGRKSLYTAGELPF 211          
BLAST of DY260502 vs. ExPASy Swiss-Prot
Match: PNH1_ORYSJ (Protein argonaute PNH1 OS=Oryza sativa subsp. japonica GN=PHN1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 4.975e-25
Identity = 58/85 (68.24%), Postives = 66/85 (77.65%), Query Frame = 3
Query:  582 MGFPTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVGSRTVNRAIMAEPVRA*QESDLRMRLPA*GGRK 836
            +G P +SK LSF  RPG+G VG +C+VKANHF AELPDKDL QYDV ITPEV SR+VNRAIM+E VR   +SDL  RLPA  GRK
Sbjct:  113 IGPPVASKGLSFCRRPGFGTVGARCVVKANHFLAELPDKDLTQYDVKITPEVSSRSVNRAIMSELVRLYHDSDLGGRLPAYDGRK 197          
BLAST of DY260502 vs. ExPASy Swiss-Prot
Match: AGO1_ARATH (Protein argonaute OS=Arabidopsis thaliana GN=AGO1 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.104e-23
Identity = 54/82 (65.85%), Postives = 62/82 (75.61%), Query Frame = 3
Query:  591 PTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVGSRTVNRAIMAEPVRA*QESDLRMRLPA*GGRK 836
            P+SSK+  F  RPG GQ G +CIVKANHFFAELPDKDL+ YDVTITPEV SR VNRA+M + V   ++S L  RLPA  GRK
Sbjct:  171 PSSSKAFKFPMRPGKGQSGKRCIVKANHFFAELPDKDLHHYDVTITPEVTSRGVNRAVMKQLVDNYRDSHLGSRLPAYDGRK 252          

HSP 2 Score: 23.8682 bits (50), Expect = 2.104e-23
Identity = 13/31 (41.94%), Postives = 17/31 (54.84%), Query Frame = 2
Query:  854 GELPFVWKESKINLVKETGGDQGSPKVEKKK 946
            G LPF  KE +INL+ E  G  G  +  + K
Sbjct:  258 GPLPFNSKEFRINLLDEEVGAGGQRREREFK 288          

HSP 3 Score: 21.9422 bits (45), Expect = 2.104e-23
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1
Query:  826 EGEKSLYTAGGTSF 867
            +G KSLYTAG   F
Sbjct:  249 DGRKSLYTAGPLPF 262          
BLAST of DY260502 vs. ExPASy Swiss-Prot
Match: AGO1A_ORYSJ (Protein argonaute 1A OS=Oryza sativa subsp. japonica GN=AGO1A PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.924e-21
Identity = 53/82 (64.63%), Postives = 61/82 (74.39%), Query Frame = 3
Query:  591 PTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVGSRTVNRAIMAEPVRA*QESDLRMRLPA*GGRK 836
            P SSKS+ F  RPG G  G +CIVKANHFFAELPDKDL+QYDV+ITPEV SR VNRA++ E V   ++S L  RLP   GRK
Sbjct:  199 PPSSKSVRFPMRPGKGTFGDRCIVKANHFFAELPDKDLHQYDVSITPEVPSRGVNRAVIGEIVTQYRQSHLGGRLPVYDGRK 280          

HSP 2 Score: 21.9422 bits (45), Expect = 1.924e-21
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1
Query:  826 EGEKSLYTAGGTSF 867
            +G KSLYTAG   F
Sbjct:  277 DGRKSLYTAGPLPF 290          
BLAST of DY260502 vs. ExPASy Swiss-Prot
Match: AGO1B_ORYSJ (Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 1.956e-21
Identity = 59/102 (57.84%), Postives = 71/102 (69.61%), Query Frame = 3
Query:  591 PTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVGSRTVNRAIMAEPVRA*QESDLRMRLPA*GGRKEPVHSWGNFLLFGRSPKLTL 896
            P SSKS+ F  RPG G  G +CIVKANHFFAELPDKDL+QYDV+ITPEV SR VNRA+M E V   + S L  RLPA  GRK  +++ G      R+ ++TL
Sbjct:  236 PPSSKSVRFPLRPGKGTYGDRCIVKANHFFAELPDKDLHQYDVSITPEVTSRGVNRAVMFELVTLYRYSHLGGRLPAYDGRKS-LYTAGPLPFASRTFEITL 336          
BLAST of DY260502 vs. ExPASy Swiss-Prot
Match: AGO1D_ORYSJ (Protein argonaute 1D OS=Oryza sativa subsp. japonica GN=AGO1D PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.236e-21
Identity = 51/82 (62.20%), Postives = 62/82 (75.61%), Query Frame = 3
Query:  591 PTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVGSRTVNRAIMAEPVRA*QESDLRMRLPA*GGRK 836
            P S+KS  F  RPG G +GT+C+VKANHFFA+LPDKDL+QYDV+ITPE+ SR  +RA+M E VR  + S L  RLPA  GRK
Sbjct:  163 PVSTKSFKFPHRPGSGSIGTRCLVKANHFFAQLPDKDLHQYDVSITPELTSRIRSRAVMEELVRLHKMSYLGGRLPAYDGRK 244          

HSP 2 Score: 21.9422 bits (45), Expect = 4.236e-21
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1
Query:  826 EGEKSLYTAGGTSF 867
            +G KSLYTAG   F
Sbjct:  241 DGRKSLYTAGPLPF 254          
BLAST of DY260502 vs. ExPASy Swiss-Prot
Match: AGO1C_ORYSJ (Protein argonaute 1C OS=Oryza sativa subsp. japonica GN=AGO1C PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.171e-21
Identity = 51/82 (62.20%), Postives = 62/82 (75.61%), Query Frame = 3
Query:  591 PTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVGSRTVNRAIMAEPVRA*QESDLRMRLPA*GGRK 836
            P+SSKS+ F  RPG G +GT+C+VKANHFFA LP+KDL+ YDV+ITPEV SR VNRA++ E V   + S L  RLPA  GRK
Sbjct:  135 PSSSKSIRFPLRPGKGTIGTRCMVKANHFFAHLPNKDLHHYDVSITPEVTSRIVNRAVIKELVNLYKASYLGGRLPAYDGRK 216          

HSP 2 Score: 22.3274 bits (46), Expect = 7.171e-21
Identity = 10/20 (50.00%), Postives = 12/20 (60.00%), Query Frame = 1
Query:  826 EGEKSLYTAGGTSFCLEGVQ 885
            +G KSLYTAG   F  +  Q
Sbjct:  213 DGRKSLYTAGPLPFTSQEFQ 232          
BLAST of DY260502 vs. ExPASy Swiss-Prot
Match: AGOL_ARATH (Argonaute-like protein At2g27880 OS=Arabidopsis thaliana GN=At2g27880 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.907e-14
Identity = 40/82 (48.78%), Postives = 56/82 (68.29%), Query Frame = 3
Query:  591 PTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVGSRTVNRAIMAEPVRA*QESDLRMRLPA*GGRK 836
            P SSK+++F  RPG G +G K +V+ANHF  ++ D+DL  YDV+I PEV S+TVNR +M   V+  ++S L  + PA  GRK
Sbjct:  139 PASSKAVTFPVRPGRGTLGKKVMVRANHFLVQVADRDLYHYDVSINPEVISKTVNRNVMKLLVKNYKDSHLGGKSPAYDGRK 220          

HSP 2 Score: 21.9422 bits (45), Expect = 2.907e-14
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1
Query:  826 EGEKSLYTAGGTSF 867
            +G KSLYTAG   F
Sbjct:  217 DGRKSLYTAGPLPF 230          
BLAST of DY260502 vs. ExPASy Swiss-Prot
Match: AGO11_ORYSJ (Protein argonaute 11 OS=Oryza sativa subsp. japonica GN=AGO11 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 5.705e-13
Identity = 40/82 (48.78%), Postives = 53/82 (64.63%), Query Frame = 3
Query:  591 PTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVGSRTVNRAIMAEPVRA*QESDLRMRLPA*GGRK 836
            PTSSK++    RPG+G VGT C V+ANHF  +L DK++  YDV I PE+ SR  NR I+ E +R+ ++     R PA  GRK
Sbjct:  118 PTSSKAVVLQARPGFGTVGTSCRVRANHFVVQLADKEIYHYDVAIAPELRSRERNRNIINELLRSHKKYLDGRRSPAYDGRK 199          
BLAST of DY260502 vs. ExPASy Swiss-Prot
Match: MEL1_ORYSJ (Protein argonaute MEL1 OS=Oryza sativa subsp. japonica GN=MEL1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.205e-12
Identity = 34/82 (41.46%), Postives = 49/82 (59.76%), Query Frame = 3
Query:  591 PTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVGSRTVNRAIMAEPVRA*QESDLRMRLPA*GGRK 836
            P S K L+   RPG+G  G K +++ANHF   + D +L  YDV+I PE  SR  NR ++ E ++   ++ L  +LPA  GRK
Sbjct:  191 PVSKKGLAHPARPGFGAAGKKVMIRANHFLVNVADNNLFHYDVSINPESKSRATNREVLNELIKLHGKTSLGGKLPAYDGRK 272          

HSP 2 Score: 22.7126 bits (47), Expect = 3.205e-12
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1
Query:  826 EGEKSLYTAGGTSF 867
            +G KSLYTAG   F
Sbjct:  269 DGRKSLYTAGSLPF 282          
The following BLAST results are available for this feature:
BLAST of DY260502 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PINH_ARATH1.274e-4349.54Protein PINHEAD OS=Arabidopsis thaliana GN=At5g438... [more]
PNH1_ORYSJ4.975e-2568.24Protein argonaute PNH1 OS=Oryza sativa subsp. japo... [more]
AGO1_ARATH2.104e-2365.85Protein argonaute OS=Arabidopsis thaliana GN=AGO1 ... [more]
AGO1A_ORYSJ1.924e-2164.63Protein argonaute 1A OS=Oryza sativa subsp. japoni... [more]
AGO1B_ORYSJ1.956e-2157.84Protein argonaute 1B OS=Oryza sativa subsp. japoni... [more]
AGO1D_ORYSJ4.236e-2162.20Protein argonaute 1D OS=Oryza sativa subsp. japoni... [more]
AGO1C_ORYSJ7.171e-2162.20Protein argonaute 1C OS=Oryza sativa subsp. japoni... [more]
AGOL_ARATH2.907e-1448.78Argonaute-like protein At2g27880 OS=Arabidopsis th... [more]
AGO11_ORYSJ5.705e-1348.78Protein argonaute 11 OS=Oryza sativa subsp. japoni... [more]
MEL1_ORYSJ3.205e-1241.46Protein argonaute MEL1 OS=Oryza sativa subsp. japo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YL05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260502 ID=DY260502; Name=DY260502; organism=Citrus clementina; type=EST; length=1254bp
CTGCAGCTTTGGTAATGTGACTGACATACATTTTCCCTTTTTTGTTATTA
GGCATTTTCCAGCAGAATTAGTCCTCGAAATCTTTGAAGTAAAGAGTAAA
GACTAGAAGAAAGACGCTGGGTATTTGCGTGTAACATTTGGTGAAAAACG
GAGAACCCATCACCAAGTCTGTACTGCTCTTGCATTTCCAGTTTTCAGTG
ACCAAAGTAAAACCAAAACGCCAAAGCATGCCTATAAGGCAAATGAAAGA
TAGCTCTGAACAACATTTAGTGATCAAAACCCATTTGCAAAATACCATGA
ATCAATCACAGAAACAACCCAAAACTGCTCAAAATGGCAAGGGCCCTCCG
CATCAAGAACTCCAGAACTCAAAACCTCATAATCAAACTTCACCACCAAC
AAAAAATAGAGGGAGAAGAAGAGGGAGAGGTGGAAGAAAATCTGATCAAA
ATGATGTGTTTATGAGACCAAGTTCAAGGCCTTGCACTGTGGCGCATAAG
CCAGTGAACCAAGTTTGTGATCTTGTTGGTAGTAATGCAAATGGGGCTGT
TGGAAATGGTCGTAGTTTGTGTGCAACGGAGATGGGGTTCCCTACTTCAA
GCAAGTCTTTGAGTTTTGCTCCTAGGCCTGGTTATGGTCAAGTTGGGACA
AAATGTATTGTTAAGGCTAACCATTTCTTTGCAGAGTTACCAGACAAGGA
CTTGAACCAGTATGATGTTACCATAACTCCTGAGGTGGGCTCAAGGACTG
TGAACAGAGCTATTATGGCAGAGCCTGTGAGGGCGTAACAAGAATCTGAC
TTAAGAATGAGACTACCGGCTTAAGGAGGGCGAAAAGAGCCTGTACACAG
CTGGGGGAACTTCCTTTTGTTTGGAAGGAGTCCAAAATTAACCTTGTAAA
AGAAACGGGAGGGGATCAAGGGTCCCCAAAAGTGGAAAAAAAAAAAGGGG
GAAACCAGGTTTGGGGGCAGAAACCCACATGCCTCCTTTAGGCCCGTTTT
TGGGGGGGGGAAAAGGGGGAAAGGCCCCCCCCAAAAAAACCTCTTCAAAT
TTTTGGGAATTTTTTCTTGGGGGGGGGCCCCCCCAAAAAAAAAAGGGAAT
TTGCCCCCATTGTGGGGGAAATCCCTTTTTTTTTTTCCCCCCAAATAATT
AAAAAAAAACCCCCCCCCCCGCGGGCCCCCGGCCGCGGAAGGGGGGGGGG
GGGGGGGGAAGAAGCTGGGGGGGGGGGGGGGGGGGGGGGGGTTTTTTTTT
TTTC
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