DY260692

Overview
NameDY260692
Unique NameDY260692
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1014
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260692 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.263e-49
Identity = 100/146 (68.49%), Postives = 109/146 (74.66%), Query Frame = 3
Query:   42 MSLIPSFFGNRRSSVFDPFSLDVWDPFRDXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVP 479
            MSLIPSFFG RRSSVFDPFSLDVWDPF+D                  E SAFV+TRVDWKETPEAHVFKAD+PGL              LQISG+RN+EKEDK+DTWHRVERSSG   RRFRLPENAK+D++KASMENGVLTVTVP
Sbjct:    1 MSLIPSFFGGRRSSVFDPFSLDVWDPFKDFPFPSSLS---------AENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTVP 137          
BLAST of DY260692 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 8.186e-49
Identity = 97/146 (66.44%), Postives = 110/146 (75.34%), Query Frame = 3
Query:   42 MSLIPSFFGNRRSSVFDPFSLDVWDPFRDXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVP 479
            MSLIP+FFG RR++VFDPFSLDVWDPF+D                  E SAFV+TRVDWKETPEAHVFKAD+PGL              LQISG+RN+EKEDK+DTWHRVERSSG F RRFRLPENAK++++KASMENGVLTVTVP
Sbjct:    1 MSLIPNFFGGRRNNVFDPFSLDVWDPFKDFPFPNTLSSASFPEFSR-ENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVP 145          
BLAST of DY260692 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 8.186e-49
Identity = 97/146 (66.44%), Postives = 109/146 (74.66%), Query Frame = 3
Query:   42 MSLIPSFFGNRRSSVFDPFSLDVWDPFRDXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVP 479
            MSLIP FFG RRS+VFDPFSLD+WDPF+D                  E SAFV+TRVDWKETPEAHVFKAD+PGL              LQISG+RN+EKEDK+DTWHRVERSSG F+RRFRLPENAK++ +KASMENGVLTVTVP
Sbjct:    1 MSLIPGFFGGRRSNVFDPFSLDMWDPFKDFHVPTSSVS--------AENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTVP 138          
BLAST of DY260692 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 8.186e-49
Identity = 98/146 (67.12%), Postives = 109/146 (74.66%), Query Frame = 3
Query:   42 MSLIPSFFGNRRSSVFDPFSLDVWDPFRDXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVP 479
            MSLIPS FG RRS+VFDPFSLDVWDPF+D                  E SAFVNTRVDWKETPEAHVF+AD+PGL              LQISG+RN+EKEDK+DTWHRVERSSG F RRFRLPENAK++++KASMENGVLTVTVP
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSLDVWDPFKDFHFPTSLS---------AENSAFVNTRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTVP 137          
BLAST of DY260692 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.824e-48
Identity = 97/146 (66.44%), Postives = 109/146 (74.66%), Query Frame = 3
Query:   42 MSLIPSFFGNRRSSVFDPFSLDVWDPFRDXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVP 479
            MSLIPSFFG RRS+VFDPFSLDVWDPF+D                  E SAFV+TRVDWKETPEAHVFKADLPG+              LQISG+R++EKEDK+D WHR+ERSSG F RRFRLPENAKMD++KA+MENGVLTVTVP
Sbjct:    1 MSLIPSFFGGRRSNVFDPFSLDVWDPFKDFPFNNSALSASFPR----ENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVP 142          
BLAST of DY260692 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 1.182e-47
Identity = 98/147 (66.67%), Postives = 109/147 (74.15%), Query Frame = 3
Query:   42 MSLIPSFFGNRRS-SVFDPFSLDVWDPFRDXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVP 479
            MSLIP  FG+RRS SVFDPFS+DV+DPF++                 GE SAF NTR+DWKETPEAHVFKADLPGL              LQISG+RN+EKEDK+DTWHRVERSSG F RRFRLPENAKMD++KASMENGVLTVTVP
Sbjct:    1 MSLIPRIFGDRRSTSVFDPFSIDVFDPFKELGFTVSNS---------GETSAFANTRIDWKETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVP 138          
BLAST of DY260692 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 2.016e-47
Identity = 97/146 (66.44%), Postives = 106/146 (72.60%), Query Frame = 3
Query:   42 MSLIPSFFGNRRSSVFDPFSLDVWDPFRDXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVP 479
            MSLIPSFF  RRS+VFDPFSLDVWDP +D                  E  AFV+TRVDWKETPEAHVFKADLPGL              LQISG+R++EKEDK+D WHRVERSSG F RRFRLPENAKMD++KASMENGVLTVTVP
Sbjct:    1 MSLIPSFFSGRRSNVFDPFSLDVWDPLKDFPFSNSSPSASFPR----ENPAFVSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTVP 142          
BLAST of DY260692 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 6.486e-46
Identity = 92/146 (63.01%), Postives = 105/146 (71.92%), Query Frame = 3
Query:   42 MSLIPSFFGNRRSSVFDPFSLDVWDPFRDXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVP 479
            MS+IPSFFG RRS+VFDPFSLDVWDPF+D                  E +AFVNT +DWKETP+AHVFKADLPGL              LQISG+RN EKE+K+D WHRVERSSG F RRFRLPENAK+D +KA+M NGV+TVTVP
Sbjct:    1 MSIIPSFFGGRRSNVFDPFSLDVWDPFKDFPLVTSSASEFGK-----ETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVP 141          
BLAST of DY260692 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 6.486e-46
Identity = 93/147 (63.27%), Postives = 108/147 (73.47%), Query Frame = 3
Query:   42 MSLIPSFFGN-RRSSVFDPFSLDVWDPFRDXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVP 479
            MS+IPSFF N RRS++FDPFSLDVWDPF++                  E SA VN RVDW+ETPEAHVFKADLPGL              L+ISG+R++EKEDK+DTWHRVERSSG F+RRFRLPEN KMD++KA+MENGVLTVTVP
Sbjct:    1 MSMIPSFFNNNRRSNIFDPFSLDVWDPFKELTSSSLSR----------ENSAIVNARVDWRETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTVP 137          
BLAST of DY260692 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 8.471e-46
Identity = 96/147 (65.31%), Postives = 107/147 (72.79%), Query Frame = 3
Query:   42 MSLIPSFFGNRRSS-VFDPFSLDVWDPFRDXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVP 479
            MSLIP  FG+RRSS +FDPFS+DV+DPFR+                 GE SAF NTR+DWKETPEAHVFKADLPGL              LQISG+RN+EKEDK+D W RVERSSG F RRFRLPENAKMD++KASMENGVLTVTVP
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPFRELGFPGTNS---------GETSAFANTRIDWKETPEAHVFKADLPGLKLEEVKVEVEEDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVP 138          
The following BLAST results are available for this feature:
BLAST of DY260692 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HSP11_SOYBN1.263e-4968.4917.3 kDa class I heat shock protein OS=Glycine max... [more]
HSP16_SOYBN8.186e-4966.4418.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP14_SOYBN8.186e-4966.4417.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP13_SOYBN8.186e-4967.1217.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_MEDSA1.824e-4866.4418.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP12_SOLPE1.182e-4766.6717.6 kDa class I heat shock protein OS=Solanum per... [more]
HSP11_PEA2.016e-4766.4418.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HSP11_DAUCA6.486e-4663.0117.8 kDa class I heat shock protein OS=Daucus caro... [more]
HS17B_ARATH6.486e-4663.2717.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HSP11_SOLPE8.471e-4665.3117.7 kDa class I heat shock protein OS=Solanum per... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP13YF04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260692 ID=DY260692; Name=DY260692; organism=Citrus clementina; type=EST; length=1014bp
GGAAAGAGAGAGGGAAAACAAAAAAAGGAAAGATAAGGAAAATGTCGCTG
ATTCCAAGCTTCTTCGGCAACCGACGCAGCAGTGTGTTCGATCCGTTCTC
ACTCGACGTTTGGGATCCATTCAGGGACTTCCCTCTCTCTGCTTCTTCTT
TTCCATCTGCGGTGTCCTCTCAGTTCCCTGGAGAAGCCTCTGCTTTCGTT
AATACCCGCGTGGACTGGAAGGAAACCCCAGAGGCCCACGTGTTCAAGGC
TGATCTTCCGGGGCTAAGGAAAGAGGAGGTGAAGGTCGAGGTTGAGGATG
ACAGGGTGCTTCAGATAAGCGGGCAGAGGAACATTGAGAAGGAAGACAAG
AGCGACACGTGGCATCGCGTGGAGCGTAGCAGTGGCATGTTCTCGAGGAG
GTTCAGGCTGCCGGAGAATGCGAAGATGGACCGCATTAAGGCTTCAATGG
AGAACGGTGTGCTTACTGTTACCGTTCCCTAAAGCGGAAGAAGCCCAGTA
AGCTACTGTTCCGACTATTGAAATTCCCTGGGCTTGACTTATTAATATAT
ATTTACCATAACTGATCGTCTGAATAAATTATAAGGGTTGGTTTGGAGTT
ATGTGACGAGAGAAATATGAAACAAGACCAGAATGTATGATATGATTATG
CCCTAACTCATATACATATACAACTAAATAACTGCATTGCTATCACTACT
AACCGGAATACCATCAATATAACATTTAATGACTCTCTGTTGCTTACAGT
CTATCGCCGATCCCTCTTACCGACAGAACGGCTCAACAACTAATAAGATA
GACTATATCGACCTTAACTAATATGTTTGATGACTATGACTTCTCCATCC
TGCCTACCACACTCATGCCTTGAATAGCGCTTAGTAAATTTATGGACTAA
TGTCGGTACGCGTATCATACATACGAAGACGTAGACTGACCCTATCAACT
CTAACACATTTTGATAAAACCAAAAAAATTATAGCATGCGAAAAATTACG
ATGTTAAATAATTT
back to top