DY260710

Overview
NameDY260710
Unique NameDY260710
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length905
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260710 vs. ExPASy Swiss-Prot
Match: KPPR_MESCR (Phosphoribulokinase, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.209e-42
Identity = 65/93 (69.89%), Postives = 70/93 (75.27%), Query Frame = 3
Query:  237 PTKTHLGFFNNQRQLAVFYNKRXXXXXXXXXXKQRGCLVITCSAGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISE 515
            PT +HLGF  NQ++   F NK             R C VITC AGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPP+GGNPDSNTLIS+
Sbjct:    9 PTTSHLGF--NQKKQLFFCNKSAYKRVSF---SSRPC-VITCLAGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPRGGNPDSNTLISD 95          

HSP 2 Score: 76.6406 bits (187), Expect = 1.209e-42
Identity = 35/54 (64.81%), Postives = 43/54 (79.63%), Query Frame = 1
Query:  517 TTTVICLDDYHSLDITGRKDKSVTALDPKSTIFNLTYEHVKEKKDRMSIKNPIY 678
            TTTVICLDDYHSLD TGRK+K VTALDP++  F+L YE VK  K+  +++ PIY
Sbjct:   96 TTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKALKEGKAVEKPIY 149          
BLAST of DY260710 vs. ExPASy Swiss-Prot
Match: KPPR_WHEAT (Phosphoribulokinase, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.960e-37
Identity = 58/103 (56.31%), Postives = 64/103 (62.14%), Query Frame = 3
Query:  207 SLNSPCSLYSPTKTHLGFFNNQRQLAVFYNKRXXXXXXXXXXKQRGCLVITCSAGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISE 515
            SL SPC+    T  + GF  NQ    +F+  R           + G      S    Q IVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLIS+
Sbjct:   11 SLRSPCT----TIPNSGFRQNQ---VIFFTTRSSRRSNT----RHGARTFQVSCAVEQPIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISD 102          

HSP 2 Score: 77.7962 bits (190), Expect = 3.960e-37
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 1
Query:  517 TTTVICLDDYHSLDITGRKDKSVTALDPKSTIFNLTYEHVKEKKDRMSIKNPIY 678
            TTTVICLDDYHSLD TGRK+K VTALDPK+  F+L YE VK  K+  +I+ PIY
Sbjct:  103 TTTVICLDDYHSLDRTGRKEKGVTALDPKANDFDLMYEQVKAIKEGKAIEKPIY 156          
BLAST of DY260710 vs. ExPASy Swiss-Prot
Match: KPPR_ARATH (Phosphoribulokinase, chloroplastic OS=Arabidopsis thaliana GN=At1g32060 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.826e-34
Identity = 46/55 (83.64%), Postives = 51/55 (92.73%), Query Frame = 3
Query:  351 VITCSAGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISE 515
            +ITC+    +TIVIGLAADSGCGKSTFMRRLTSVFGGAA+PPKGGNPDSNTLIS+
Sbjct:   43 LITCA---QETIVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISD 94          

HSP 2 Score: 72.7886 bits (177), Expect = 3.826e-34
Identity = 33/54 (61.11%), Postives = 43/54 (79.63%), Query Frame = 1
Query:  517 TTTVICLDDYHSLDITGRKDKSVTALDPKSTIFNLTYEHVKEKKDRMSIKNPIY 678
            TTTVICLDDYHSLD  GRK++ VTALDP++  F+L YE VK  K+ ++++ PIY
Sbjct:   95 TTTVICLDDYHSLDRYGRKEQKVTALDPRANDFDLMYEQVKALKNGIAVEKPIY 148          
BLAST of DY260710 vs. ExPASy Swiss-Prot
Match: KPPR_SPIOL (Phosphoribulokinase, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.851e-26
Identity = 71/132 (53.79%), Postives = 80/132 (60.61%), Query Frame = 3
Query:  222 CSLYS-PTKTHLGFFNNQRQLAVFYNKRXXXXXXXXXXKQRGCLVITCSAGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISENHHCDLLR*LSLA*HNWKKR*ECHCT*PKINNF 614
            C++Y+ PT THLG   NQ    VF+N +            R   VITCS    QTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLIS+      L        N +K  +     PK N+F
Sbjct:    4 CTVYTIPTTTHLGSSFNQNNKQVFFNYKRSSSSNNTLFTTRPSYVITCS--QQQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDFHSLDRNGRKVEKVTALDPKANDF 133          

HSP 2 Score: 70.0922 bits (170), Expect = 1.984e-11
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 1
Query:  517 TTTVICLDDYHSLDITGRKDKSVTALDPKSTIFNLTYEHVKEKKDRMSIKNPIY 678
            TTTVICLDD+HSLD  GRK + VTALDPK+  F+L YE VK  K+  ++  PIY
Sbjct:  101 TTTVICLDDFHSLDRNGRKVEKVTALDPKANDFDLMYEQVKALKEGKAVDKPIY 154          
BLAST of DY260710 vs. ExPASy Swiss-Prot
Match: KPPR_SYNY3 (Phosphoribulokinase OS=Synechocystis sp. (strain PCC 6803) GN=prk PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.857e-18
Identity = 32/55 (58.18%), Postives = 37/55 (67.27%), Query Frame = 1
Query:  523 TVICLDDYHSLDITGRKDKSVTALDPKSTIFNLTYEHVKEKKDRMSIKNPIYKQK 687
            TVICLDDYHSLD  GRK   VTALDP++  F+L YE +K  K   SI  PIY  +
Sbjct:   38 TVICLDDYHSLDRQGRKAAGVTALDPRANNFDLMYEQIKTLKSGQSIMKPIYNHE 92          

HSP 2 Score: 45.0542 bits (105), Expect = 6.857e-18
Identity = 18/27 (66.67%), Postives = 24/27 (88.89%), Query Frame = 3
Query:  378 QTIVIGLAADSGCGKSTFMRRLTSVFG 458
            + ++IG+A DSGCGKSTF+RRLT +FG
Sbjct:    7 RVVLIGVAGDSGCGKSTFLRRLTDLFG 33          
BLAST of DY260710 vs. ExPASy Swiss-Prot
Match: KPPR_CHLRE (Phosphoribulokinase, chloroplastic OS=Chlamydomonas reinhardtii GN=PRKA PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.959e-16
Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 3
Query:  366 AGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLIS--------ENHHC 527
            A   +T+VIGLAADSGCGKSTFMRR+TS+FGG  +PP GGNPDSNTLIS        +++HC
Sbjct:   31 ADKDKTVVIGLAADSGCGKSTFMRRMTSIFGGVPKPPAGGNPDSNTLISDMTTVICLDDYHC 92          
BLAST of DY260710 vs. ExPASy Swiss-Prot
Match: KPPR_VITSX (Phosphoribulokinase, chloroplastic (Fragments) OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 1.080e-15
Identity = 23/25 (92.00%), Postives = 25/25 (100.00%), Query Frame = 3
Query:  441 LTSVFGGAAEPPKGGNPDSNTLISE 515
            LTSVFGGAAEPP+GGNPDSNTLIS+
Sbjct:    1 LTSVFGGAAEPPRGGNPDSNTLISD 25          

HSP 2 Score: 52.373 bits (124), Expect = 1.080e-15
Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = 1
Query:  517 TTTVICLDDYHSLDITGRKDKSVTALDPKSTIFNLTYEHVKE 642
            TTTVICLDDYHSL      D+ VTALDP++  F+L YE VK+
Sbjct:   26 TTTVICLDDYHSL------DRGVTALDPRANDFDLMYEQVKK 61          
The following BLAST results are available for this feature:
BLAST of DY260710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
KPPR_MESCR1.209e-4269.89Phosphoribulokinase, chloroplastic OS=Mesembryanth... [more]
KPPR_WHEAT3.960e-3756.31Phosphoribulokinase, chloroplastic OS=Triticum aes... [more]
KPPR_ARATH3.826e-3483.64Phosphoribulokinase, chloroplastic OS=Arabidopsis ... [more]
KPPR_SPIOL2.851e-2653.79Phosphoribulokinase, chloroplastic OS=Spinacia ole... [more]
KPPR_SYNY36.857e-1858.18Phosphoribulokinase OS=Synechocystis sp. (strain P... [more]
KPPR_CHLRE5.959e-1664.52Phosphoribulokinase, chloroplastic OS=Chlamydomona... [more]
KPPR_VITSX1.080e-1592.00Phosphoribulokinase, chloroplastic (Fragments) OS=... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP13YF24FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260710 ID=DY260710; Name=DY260710; organism=Citrus clementina; type=EST; length=905bp
CATGATTTTTGTTTTTTCAATTATATATACTTGTGCTCCAAAATTTGCCT
CTTAAAAATCTAAATAAGATTCCAAAAGGTATCCCATCTCATCATTTTCA
TGTCTCATTTCAGAATTTAGCTGAAAGAATCCTAAAACGTTCATTTCTGC
TCTAGCAGCAGCATCCCTCACCGAGCCAAAAAAAAAAGAGAAAGAAAATG
GCCATTTCCCTCAACTCACCATGCTCTCTTTACTCGCCAACAAAAACCCA
CTTGGGTTTTTTCAACAACCAAAGACAACTAGCGGTTTTTTACAACAAGA
GAAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCAAGCAGAGAGGATGTCTT
GTGATAACATGCTCAGCAGGTGACTCACAGACAATTGTGATTGGTCTGGC
GGCAGACTCGGGGTGTGGCAAGAGCACTTTCATGAGGAGACTAACAAGCG
TCTTTGGTGGAGCAGCAGAGCCACCAAAGGGCGGCAACCCTGATTCAAAC
ACTCTCATCAGTGAAAACCACCACTGTGATTTGCTTAGATGATTATCACT
CGCTTGACATAACTGGAAGAAAAGATAAGAGTGTCACTGCACTTGACCCA
AAATCAACAATTTTTAATCTTACGTATGAACATGTTAAAGAAAAAAAAGA
TAGAATGTCTATAAAAAACCCCATTTACAAACAAAAAAACAAAATCTACA
AACCCTCAACAAAATAAAAAACACCACCTAAACTAATACCTAAAAAGAAT
CTAAAAAAAAAATATATACACACCTTATTAAAATATTTAAACCTTCTACT
ATCATATGATCTATAATAACAAAATCAATATATTCAAACAAAAACCCCCA
CAAAGACCTAGACCAACCATATAACCCGCCATTCTTTACAAAATAATTCC
CTATA
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