DY260720

Overview
NameDY260720
Unique NameDY260720
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length997
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260720 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 1.508e-63
Identity = 120/170 (70.59%), Postives = 133/170 (78.24%), Query Frame = 3
Query:   66 IGVKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFXXXXXXXXXXXXXXXXXXXNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLKLLRKEHPIS 575
            +GV EMLG PLN  +  R+SAP AS+PSTFK VALF                   ++ELAKWYGPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+KYQA+ELIHARWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTL    K  PI+
Sbjct:    4 LGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPAKSKAVSET---SDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 170          
BLAST of DY260720 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.436e-21
Identity = 51/106 (48.11%), Postives = 65/106 (61.32%), Query Frame = 3
Query:  246 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLKLLRKE 563
            ++YGPDR  FL  G    ++ PEYLTGE PGDYG+D  GLS  P  F++Y+  ELIHARWA+LGA G + PE  +++      E VWFK GA +     L  L  E
Sbjct:   32 EFYGPDRAKFL--GPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNE 135          
BLAST of DY260720 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 2.693e-20
Identity = 51/102 (50.00%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  249 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLKLL 554
            WYGPDR  +L        +IP YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L  L
Sbjct:   49 WYGPDRPKYLGPF---SDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYL 146          
BLAST of DY260720 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.517e-20
Identity = 51/102 (50.00%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  249 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLKLL 554
            WYGPDR ++L        E P YLTGE PGDYG+D  GLS  P++F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK GA +     L  L
Sbjct:   58 WYGPDRVLYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 155          
BLAST of DY260720 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.593e-20
Identity = 51/102 (50.00%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  249 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLKLL 554
            WYGPDR ++L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK GA +     L  L
Sbjct:   62 WYGPDRVLYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 159          
BLAST of DY260720 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.593e-20
Identity = 52/102 (50.98%), Postives = 64/102 (62.75%), Query Frame = 3
Query:  249 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLKLL 554
            WYGPDR ++L  G L   E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L  L
Sbjct:   49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 146          
BLAST of DY260720 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.999e-20
Identity = 51/102 (50.00%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  249 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLKLL 554
            WYGPDR ++L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK GA +     L  L
Sbjct:   62 WYGPDRVMYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 159          
BLAST of DY260720 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.999e-20
Identity = 51/102 (50.00%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  249 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLKLL 554
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ FSK +  E+IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L  L
Sbjct:   52 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYL 149          
BLAST of DY260720 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.999e-20
Identity = 51/102 (50.00%), Postives = 61/102 (59.80%), Query Frame = 3
Query:  249 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLKLL 554
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE F + G   G EAVWFK G+ +     L  L
Sbjct:   50 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFSEGGLDYL 147          
BLAST of DY260720 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.999e-20
Identity = 51/102 (50.00%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  249 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLKLL 554
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ FSK +  E+IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L  L
Sbjct:   53 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYL 150          
The following BLAST results are available for this feature:
BLAST of DY260720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB26_ARATH1.508e-6370.59Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB2_DUNTE2.436e-2148.11Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_GOSHI2.693e-2050.00Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB2B_PINSY3.517e-2050.00Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2A_PINSY4.593e-2050.00Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB29_MAIZE4.593e-2050.98Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB2A_PYRPY5.999e-2050.00Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB28_PEA5.999e-2050.00Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB24_PETSP5.999e-2050.00Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB22_PEA5.999e-2050.00Chlorophyll a-b binding protein AB80, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP13YG11FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260720 ID=DY260720; Name=DY260720; organism=Citrus clementina; type=EST; length=997bp
GAAGCAGCAGCCTTTACACTCTGAAGATGGCTTCATTGGCAGCATCGTCC
ACTCCTGCTGCCTCCATTGGAGTTAAGGAGATGCTTGGCAACCCTCTCAA
TGTCAGCAGTGCTGTTAGGACTTCAGCTCCAGGTGCATCAAACCCTTCTA
CTTTCAAGCCCGTTGCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCC
AAGTCTAAGCCCGTCGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTG
GTATGGTCCTGACCGAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGAT
CTGAGATCCCTGAGTACTTGACCGGAGAAGTTCCCGGAGACTATGGTTAC
GATCCTTTTGGTCTCAGCAAGAAACCAGACGACTTCAGCAAATATCAGGC
ATATGAATTGATTCATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCA
TCATTCCTGAAGCCTTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAGCT
GTCTGGTTCAAGACTGGAGCTCTACTTCTTGATGGAAACACATTGAAACT
ACTTCGGAAAGAACATCCCATATCACCTTGTTTTTGCTGTCATTGCTGAC
ATTGCTCTTGTAGGTGGTGCTAAAATTTATCAAATCACAAAGAGGATAGG
AATTAGTATGACAAGAATTCTCTAAAAGTGGGTCTATTATGAACGACTCG
TGAGTAAATATACTATCCCTGATTCACATTACAATAATAAACTATCCTCT
GATATAAAAAAAAGATAATATTTTGTTGTTTATTTAAACAAGCAAAGATT
ATCATAGACAGGATTTATGAAGGATATAAGTCATCATAAAATAAGGTAAA
TTTAGCTAGTAATATAATCAAATCCAACCCTCACCCATAATCAATTCAAT
ACTACATCTATCTATAATACTATTTGATAATTATTATTATTCCTCTCAAG
TTTTTACCTTACATCTTCACATATCTTAAGTCCTTCCTCCTATTTTA
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