DY260726

Overview
NameDY260726
Unique NameDY260726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length954
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260726 vs. ExPASy Swiss-Prot
Match: RS28_MAIZE (40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.951e-18
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = 2
Query:    8 LDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 160
            +D+Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDI
Sbjct:    1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDI 51          
BLAST of DY260726 vs. ExPASy Swiss-Prot
Match: RS282_ARATH (40S ribosomal protein S28-2 OS=Arabidopsis thaliana GN=RPS28C PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.401e-17
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = 2
Query:    8 LDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 160
            +DSQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RFIMRNVKGPVREGD+
Sbjct:    1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDV 50          
BLAST of DY260726 vs. ExPASy Swiss-Prot
Match: RS281_ARATH (40S ribosomal protein S28-1 OS=Arabidopsis thaliana GN=RPS28A PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.802e-17
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = 2
Query:    8 LDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 160
            +DSQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGDI
Sbjct:    1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDI 50          
BLAST of DY260726 vs. ExPASy Swiss-Prot
Match: RS28_ICTPU (40S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.931e-12
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 2
Query:   20 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 160
            IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDV 55          
BLAST of DY260726 vs. ExPASy Swiss-Prot
Match: RS28_DANRE (40S ribosomal protein S28 OS=Danio rerio GN=rps28 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.931e-12
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 2
Query:   20 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 160
            IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDV 55          
BLAST of DY260726 vs. ExPASy Swiss-Prot
Match: RS28_RAT (40S ribosomal protein S28 OS=Rattus norvegicus GN=Rps28 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.586e-12
Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = 2
Query:   20 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 160
            IK A V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDV 55          
BLAST of DY260726 vs. ExPASy Swiss-Prot
Match: RS28_PIG (40S ribosomal protein S28 OS=Sus scrofa GN=RPS28 PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 9.586e-12
Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = 2
Query:   20 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 160
            IK A V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDV 55          
BLAST of DY260726 vs. ExPASy Swiss-Prot
Match: RS28_MOUSE (40S ribosomal protein S28 OS=Mus musculus GN=Rps28 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.586e-12
Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = 2
Query:   20 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 160
            IK A V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDV 55          
BLAST of DY260726 vs. ExPASy Swiss-Prot
Match: RS28_HUMAN (40S ribosomal protein S28 OS=Homo sapiens GN=RPS28 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.586e-12
Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = 2
Query:   20 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 160
            IK A V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDV 55          
BLAST of DY260726 vs. ExPASy Swiss-Prot
Match: RS28_DROME (40S ribosomal protein S28 OS=Drosophila melanogaster GN=RpS28b PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 9.586e-12
Identity = 34/51 (66.67%), Postives = 43/51 (84.31%), Query Frame = 2
Query:    8 LDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 160
            +D  +  A V+KV+GRTGS+GQ TQV+V+FL +QNR I+RNVKGPVREGDI
Sbjct:    1 MDKPVVWARVMKVLGRTGSQGQCTQVKVEFLGEQNRQIIRNVKGPVREGDI 51          
The following BLAST results are available for this feature:
BLAST of DY260726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RS28_MAIZE8.951e-1888.2440S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=... [more]
RS282_ARATH3.401e-1788.2440S ribosomal protein S28-2 OS=Arabidopsis thalian... [more]
RS281_ARATH5.802e-1788.2440S ribosomal protein S28-1 OS=Arabidopsis thalian... [more]
RS28_ICTPU1.931e-1274.4740S ribosomal protein S28 OS=Ictalurus punctatus G... [more]
RS28_DANRE1.931e-1274.4740S ribosomal protein S28 OS=Danio rerio GN=rps28 ... [more]
RS28_RAT9.586e-1272.3440S ribosomal protein S28 OS=Rattus norvegicus GN=... [more]
RS28_PIG9.586e-1272.3440S ribosomal protein S28 OS=Sus scrofa GN=RPS28 P... [more]
RS28_MOUSE9.586e-1272.3440S ribosomal protein S28 OS=Mus musculus GN=Rps28... [more]
RS28_HUMAN9.586e-1272.3440S ribosomal protein S28 OS=Homo sapiens GN=RPS28... [more]
RS28_DROME9.586e-1266.6740S ribosomal protein S28 OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP13YG17FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260726 ID=DY260726; Name=DY260726; organism=Citrus clementina; type=EST; length=954bp
ATTGTGTCTGGATTCTCAGATTAAGCACGCTGTGGTGGTGAAAGTCATGG
GCCGCACTGGTTCAAGAGGACAGGTTACTCAAGTGAGAGTCAAGTTTTTA
GATGATCAGAACCGATTCATCATGAGGAATGTGAAGGGACCCGTTAGAGA
AGGTGATATCCTCACTTTGCTCGAGTCTGAGAGAGAAGCTAGGAGGCTCC
GTTGAAGAGTCCATCTCTGGTCATACTATCTCAAACTTTTTGTTGGAAAC
TAGGGTTCATTACTGTTGTTTTTAATAGGCTAGTGATTGACAATGTAATG
AGTTTCACAACTTATTTAGAAGGTTTTCACATTACAAACCGGGTCCAGAC
CCAGGAATTATAAATTAAGTATACTTAAGAACCTGAACCCCTAGAACTCC
ATATTCGATCCTAGGGTATATAGTAAGAAAAAACATCCTCTGTTTGACAG
GTCCATAGAAAAAACAACTAATACATACTTCAGTAAATATAATTAAACAG
AAAATTCAGAATTGTCCAAAAAGAAATTAAAACCGACGAGCCTACTCTAT
CAGTATCACAACCTGTTTTCGTACTTACTGTAAAACTATCAGCGATTAAT
ATCAGGTTAACAGAACTTCGCAAGTTGTGCACTACTGTCATCTTAGCAAC
CTCTAACGTACAGCAAGGTCTAACATGATATTATTAAACAAATAATATAT
ACTAACCTTATTCTATTACCGCAGAGTTGCATAACTACTGCAATAAAGAT
ACAAATAAGAGTCAAAAATCACACATTACCTACTACCATAAACCATAGTC
CTATTACTCGCAATATTACTCTTTTCTCCACACTCAACCGCCACATTACC
TAGATATCATAATAGTCTGATTCATTGTCAAAGAGCATATACATGAAACA
AGATATCATGCCGATACATATGATACACCGCACGAAACGCAAATACGCCG
CGAC
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