DY261089
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY261089 vs. ExPASy Swiss-Prot
Match: U2AFA_ARATH (Splicing factor U2af small subunit A OS=Arabidopsis thaliana GN=U2AF35A PE=1 SV=1) HSP 1 Score: 209.92 bits (533), Expect = 1.900e-53 Identity = 107/171 (62.57%), Postives = 117/171 (68.42%), Query Frame = 3 Query: 363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMYQRLDMITPGVDAQGNPLDPRKIQXXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGEILCWASYYCRFLSRNGFSRSQPGNNWRRKNAIGGGYWQF 875 M EHLASIFGTEKDRVNCPFYFKIGACR GDRCSRLH +P++SPTLLL NMYQR DMITPGVDAQG PLDPRKIQ K+GEIESLNICDNLADHM+GNVYVQF+EE+QAA AL++L G F F R + N GGY F Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDF-REATCRQYEENNCNRGGYCNF 170
BLAST of DY261089 vs. ExPASy Swiss-Prot
Match: U2AFA_ORYSJ (Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica GN=U2AF35A PE=2 SV=1) HSP 1 Score: 209.534 bits (532), Expect = 2.481e-53 Identity = 106/171 (61.99%), Postives = 119/171 (69.59%), Query Frame = 3 Query: 363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMYQRLDMITPGVDAQGNPLDPRKIQXXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGEILCWASYYCRFLSRNGFSRSQPGNNWRRKNAIGGGYWQF 875 M EHLASIFGTEKDRVNCPFYFKIGACR GDRCSRLH KPSVSPTLLL NMY R DMITPG+DAQGNP+DP KIQ +KYGEIESL++CDN ADHM+GNVYVQFREE+QAARAL++L+G F + F R + + GGY F Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPSVSPTLLLSNMYLRPDMITPGIDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIGNVYVQFREEDQAARALQALTGRYYSGRPIIVEFSPVSDF-REATCRQYEENSCNRGGYCNF 170
BLAST of DY261089 vs. ExPASy Swiss-Prot
Match: U2AFB_ARATH (Splicing factor U2af small subunit B OS=Arabidopsis thaliana GN=U2AF35B PE=2 SV=1) HSP 1 Score: 200.675 bits (509), Expect = 1.153e-50 Identity = 101/171 (59.06%), Postives = 114/171 (66.67%), Query Frame = 3 Query: 363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMYQRLDMITPGVDAQGNPLDPRKIQXXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGEILCWASYYCRFLSRNGFSRSQPGNNWRRKNAIGGGYWQF 875 M EHLASIFGTEKDRVNCPFYFKIGACR GDRCSRLH +P++SPTLLL NMYQR DMITPGVD QG PLDP KIQ NK+GE+ESLN+CDNLADHM+GNVYV F+EE+ AA AL++L G F F R + + GGY F Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEEDHAAAALQALQGRFYSGRPIIADFSPVTDF-REATCRQYEENSCNRGGYCNF 170
BLAST of DY261089 vs. ExPASy Swiss-Prot
Match: U2AFB_ORYSJ (Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica GN=U2AF35B PE=2 SV=1) HSP 1 Score: 197.593 bits (501), Expect = 9.758e-50 Identity = 98/171 (57.31%), Postives = 114/171 (66.67%), Query Frame = 3 Query: 363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMYQRLDMITPGVDAQGNPLDPRKIQXXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGEILCWASYYCRFLSRNGFSRSQPGNNWRRKNAIGGGYWQF 875 M EHLASIFGTEKDRVNCPFYFKIGACR GDRCSRLH +P+VSPT++L NMYQR DMITPGVDAQG P+DP K+Q +K+GE+E+LN+CDNLADHM+GNVYVQFREEEQA A +L G + F R + + GGY F Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITPGVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEEQAVAAHNALQGRFYSGRPIIVEYSPVTDF-REATCRQFEENSCNRGGYCNF 170
BLAST of DY261089 vs. ExPASy Swiss-Prot
Match: U2AF1_DROME (Splicing factor U2af 38 kDa subunit OS=Drosophila melanogaster GN=U2af38 PE=1 SV=2) HSP 1 Score: 132.88 bits (333), Expect = 9.969e-34 Identity = 67/133 (50.38%), Postives = 82/133 (61.65%), Query Frame = 3 Query: 363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMY---QRLDMITPGVDAQGNPLDPRKIQXXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLS 752 M E+LASIFGTEKD+VNC FYFKIGACR GDRCSR+H KP+ S T+LL N+Y Q G N D + +KYGEIE +N+CDNL DH+VGNVY++FR E A +A L+ Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRIHNKPTFSQTVLLQNLYVNPQNSAKSADGSHLVANVSDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKAANDLN 133 HSP 2 Score: 32.7278 bits (73), Expect = 9.969e-34 Identity = 20/45 (44.44%), Postives = 26/45 (57.78%), Query Frame = 1 Query: 757 KFYAGRPIIVDFSPVTDFREANLETIG-GEKMQSVGGTGNFRHPK 888 +++ GRP+ + SPVTDFREA GE +S G NF H K Sbjct: 135 RWFGGRPVYSELSPVTDFREACCRQYEMGECTRS--GFCNFMHLK 177
BLAST of DY261089 vs. ExPASy Swiss-Prot
Match: U2AF1_SCHPO (Splicing factor U2AF 23 kDa subunit OS=Schizosaccharomyces pombe GN=SPAP8A3.06 PE=1 SV=2) HSP 1 Score: 125.561 bits (314), Expect = 3.751e-33 Identity = 61/130 (46.92%), Postives = 81/130 (62.31%), Query Frame = 3 Query: 363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMYQRLDMITPGVDAQGNPLDPRKIQXXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLS 752 M HLASI+GTE+D+VNC FY+KIGACR G+RCSR H KP+ S T+L NMY+ P + G R++ +KYGE+E L +CDN+ DH+VGNVYV+F+ EE A A+ L+ Sbjct: 1 MASHLASIYGTEQDKVNCSFYYKIGACRHGERCSRKHVKPNFSQTILCPNMYK-----NPIHEPNGKKFTQRELAEQFDAFYEDMFCEFSKYGEVEQLVVCDNVGDHLVGNVYVRFKYEESAQNAIDDLN 125 HSP 2 Score: 38.1206 bits (87), Expect = 3.751e-33 Identity = 20/45 (44.44%), Postives = 26/45 (57.78%), Query Frame = 1 Query: 757 KFYAGRPIIVDFSPVTDFREANLETIGGEKMQSVGGTGNFRHPKK 891 ++Y+ RP+ + SPVTDFREA + Q GG NF H KK Sbjct: 127 RWYSQRPVYAELSPVTDFREACCRQHETSECQR-GGLCNFMHAKK 170
BLAST of DY261089 vs. ExPASy Swiss-Prot
Match: U2AF1_HUMAN (Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1 SV=3) HSP 1 Score: 131.724 bits (330), Expect = 4.875e-33 Identity = 66/131 (50.38%), Postives = 84/131 (64.12%), Query Frame = 3 Query: 363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMYQRLDMITPGVDAQGNPLDPRKIQ-XXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLS 752 M E+LASIFGTEKD+VNC FYFKIGACR GDRCSRLH KP+ S T+ L N+Y+ + D + ++Q KYGE+E +N+CDNL DH+VGNVYV+FR EE A +A+ L+ Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLN 131 HSP 2 Score: 31.5722 bits (70), Expect = 4.875e-33 Identity = 20/45 (44.44%), Postives = 26/45 (57.78%), Query Frame = 1 Query: 757 KFYAGRPIIVDFSPVTDFREANLETIG-GEKMQSVGGTGNFRHPK 888 +++ G+PI + SPVTDFREA GE + GG NF H K Sbjct: 133 RWFNGQPIHAELSPVTDFREACCRQYEMGECTR--GGFCNFMHLK 175
BLAST of DY261089 vs. ExPASy Swiss-Prot
Match: U2AF1_MOUSE (Splicing factor U2AF 35 kDa subunit OS=Mus musculus GN=U2af1 PE=2 SV=4) HSP 1 Score: 131.724 bits (330), Expect = 4.876e-33 Identity = 66/131 (50.38%), Postives = 84/131 (64.12%), Query Frame = 3 Query: 363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMYQRLDMITPGVDAQGNPLDPRKIQ-XXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLS 752 M E+LASIFGTEKD+VNC FYFKIGACR GDRCSRLH KP+ S T+ L N+Y+ + D + ++Q KYGE+E +N+CDNL DH+VGNVYV+FR EE A +A+ L+ Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLN 131 HSP 2 Score: 31.5722 bits (70), Expect = 4.876e-33 Identity = 20/45 (44.44%), Postives = 26/45 (57.78%), Query Frame = 1 Query: 757 KFYAGRPIIVDFSPVTDFREANLETIG-GEKMQSVGGTGNFRHPK 888 +++ G+PI + SPVTDFREA GE + GG NF H K Sbjct: 133 RWFNGQPIHAELSPVTDFREACCRQYEMGECTR--GGFCNFMHLK 175
BLAST of DY261089 vs. ExPASy Swiss-Prot
Match: U2AF1_BOVIN (Splicing factor U2AF 35 kDa subunit OS=Bos taurus GN=U2AF1 PE=2 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 4.876e-33 Identity = 66/131 (50.38%), Postives = 84/131 (64.12%), Query Frame = 3 Query: 363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMYQRLDMITPGVDAQGNPLDPRKIQ-XXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLS 752 M E+LASIFGTEKD+VNC FYFKIGACR GDRCSRLH KP+ S T+ L N+Y+ + D + ++Q KYGE+E +N+CDNL DH+VGNVYV+FR EE A +A+ L+ Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLN 131 HSP 2 Score: 31.5722 bits (70), Expect = 4.876e-33 Identity = 20/45 (44.44%), Postives = 26/45 (57.78%), Query Frame = 1 Query: 757 KFYAGRPIIVDFSPVTDFREANLETIG-GEKMQSVGGTGNFRHPK 888 +++ G+PI + SPVTDFREA GE + GG NF H K Sbjct: 133 RWFNGQPIHAELSPVTDFREACCRQYEMGECTR--GGFCNFMHLK 175
BLAST of DY261089 vs. ExPASy Swiss-Prot
Match: U2AF4_RAT (Splicing factor U2AF 26 kDa subunit OS=Rattus norvegicus GN=U2af1l4 PE=2 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 1.405e-32 Identity = 68/131 (51.91%), Postives = 84/131 (64.12%), Query Frame = 3 Query: 363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMYQRLDMITPGVDAQGNPLDPRKIQ-XXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLS 752 M E+LASIFGTEKD+VNC FYFKIGACR GDRCSRLH KP+ S T++L N+Y+ D + ++Q KYGEIE +N+CDNL DH+VGNVYV+FR EE A RA+ L+ Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELN 131 HSP 2 Score: 26.1794 bits (56), Expect = 1.405e-32 Identity = 16/43 (37.21%), Postives = 24/43 (55.81%), Query Frame = 1 Query: 757 KFYAGRPIIVDFSPVTDFREANLETIG-GEKMQSVGGTGNFRH 882 +++ G+ + + SPVTDFRE+ GE + GG NF H Sbjct: 133 RWFNGQAVHAELSPVTDFRESCCRQYEMGECTR--GGFCNFMH 173 The following BLAST results are available for this feature:
BLAST of DY261089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
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Sequences
The
following sequences are available for this feature:
EST sequence >DY261089 ID=DY261089; Name=DY261089; organism=Citrus clementina; type=EST; length=1021bpback to top |