DY261089

Overview
NameDY261089
Unique NameDY261089
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1021
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY261089 vs. ExPASy Swiss-Prot
Match: U2AFA_ARATH (Splicing factor U2af small subunit A OS=Arabidopsis thaliana GN=U2AF35A PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.900e-53
Identity = 107/171 (62.57%), Postives = 117/171 (68.42%), Query Frame = 3
Query:  363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMYQRLDMITPGVDAQGNPLDPRKIQXXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGEILCWASYYCRFLSRNGFSRSQPGNNWRRKNAIGGGYWQF 875
            M EHLASIFGTEKDRVNCPFYFKIGACR GDRCSRLH +P++SPTLLL NMYQR DMITPGVDAQG PLDPRKIQ               K+GEIESLNICDNLADHM+GNVYVQF+EE+QAA AL++L G           F     F R      +   N   GGY  F
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDF-REATCRQYEENNCNRGGYCNF 170          
BLAST of DY261089 vs. ExPASy Swiss-Prot
Match: U2AFA_ORYSJ (Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica GN=U2AF35A PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 2.481e-53
Identity = 106/171 (61.99%), Postives = 119/171 (69.59%), Query Frame = 3
Query:  363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMYQRLDMITPGVDAQGNPLDPRKIQXXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGEILCWASYYCRFLSRNGFSRSQPGNNWRRKNAIGGGYWQF 875
            M EHLASIFGTEKDRVNCPFYFKIGACR GDRCSRLH KPSVSPTLLL NMY R DMITPG+DAQGNP+DP KIQ              +KYGEIESL++CDN ADHM+GNVYVQFREE+QAARAL++L+G           F   + F R      +   +   GGY  F
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPSVSPTLLLSNMYLRPDMITPGIDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIGNVYVQFREEDQAARALQALTGRYYSGRPIIVEFSPVSDF-REATCRQYEENSCNRGGYCNF 170          
BLAST of DY261089 vs. ExPASy Swiss-Prot
Match: U2AFB_ARATH (Splicing factor U2af small subunit B OS=Arabidopsis thaliana GN=U2AF35B PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.153e-50
Identity = 101/171 (59.06%), Postives = 114/171 (66.67%), Query Frame = 3
Query:  363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMYQRLDMITPGVDAQGNPLDPRKIQXXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGEILCWASYYCRFLSRNGFSRSQPGNNWRRKNAIGGGYWQF 875
            M EHLASIFGTEKDRVNCPFYFKIGACR GDRCSRLH +P++SPTLLL NMYQR DMITPGVD QG PLDP KIQ              NK+GE+ESLN+CDNLADHM+GNVYV F+EE+ AA AL++L G           F     F R      +   +   GGY  F
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEEDHAAAALQALQGRFYSGRPIIADFSPVTDF-REATCRQYEENSCNRGGYCNF 170          
BLAST of DY261089 vs. ExPASy Swiss-Prot
Match: U2AFB_ORYSJ (Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica GN=U2AF35B PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 9.758e-50
Identity = 98/171 (57.31%), Postives = 114/171 (66.67%), Query Frame = 3
Query:  363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMYQRLDMITPGVDAQGNPLDPRKIQXXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGEILCWASYYCRFLSRNGFSRSQPGNNWRRKNAIGGGYWQF 875
            M EHLASIFGTEKDRVNCPFYFKIGACR GDRCSRLH +P+VSPT++L NMYQR DMITPGVDAQG P+DP K+Q              +K+GE+E+LN+CDNLADHM+GNVYVQFREEEQA  A  +L G           +     F R      +   +   GGY  F
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITPGVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEEQAVAAHNALQGRFYSGRPIIVEYSPVTDF-REATCRQFEENSCNRGGYCNF 170          
BLAST of DY261089 vs. ExPASy Swiss-Prot
Match: U2AF1_DROME (Splicing factor U2af 38 kDa subunit OS=Drosophila melanogaster GN=U2af38 PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 9.969e-34
Identity = 67/133 (50.38%), Postives = 82/133 (61.65%), Query Frame = 3
Query:  363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMY---QRLDMITPGVDAQGNPLDPRKIQXXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLS 752
            M E+LASIFGTEKD+VNC FYFKIGACR GDRCSR+H KP+ S T+LL N+Y   Q       G     N  D    +              +KYGEIE +N+CDNL DH+VGNVY++FR E  A +A   L+
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRIHNKPTFSQTVLLQNLYVNPQNSAKSADGSHLVANVSDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKAANDLN 133          

HSP 2 Score: 32.7278 bits (73), Expect = 9.969e-34
Identity = 20/45 (44.44%), Postives = 26/45 (57.78%), Query Frame = 1
Query:  757 KFYAGRPIIVDFSPVTDFREANLETIG-GEKMQSVGGTGNFRHPK 888
            +++ GRP+  + SPVTDFREA       GE  +S  G  NF H K
Sbjct:  135 RWFGGRPVYSELSPVTDFREACCRQYEMGECTRS--GFCNFMHLK 177          
BLAST of DY261089 vs. ExPASy Swiss-Prot
Match: U2AF1_SCHPO (Splicing factor U2AF 23 kDa subunit OS=Schizosaccharomyces pombe GN=SPAP8A3.06 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 3.751e-33
Identity = 61/130 (46.92%), Postives = 81/130 (62.31%), Query Frame = 3
Query:  363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMYQRLDMITPGVDAQGNPLDPRKIQXXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLS 752
            M  HLASI+GTE+D+VNC FY+KIGACR G+RCSR H KP+ S T+L  NMY+      P  +  G     R++               +KYGE+E L +CDN+ DH+VGNVYV+F+ EE A  A+  L+
Sbjct:    1 MASHLASIYGTEQDKVNCSFYYKIGACRHGERCSRKHVKPNFSQTILCPNMYK-----NPIHEPNGKKFTQRELAEQFDAFYEDMFCEFSKYGEVEQLVVCDNVGDHLVGNVYVRFKYEESAQNAIDDLN 125          

HSP 2 Score: 38.1206 bits (87), Expect = 3.751e-33
Identity = 20/45 (44.44%), Postives = 26/45 (57.78%), Query Frame = 1
Query:  757 KFYAGRPIIVDFSPVTDFREANLETIGGEKMQSVGGTGNFRHPKK 891
            ++Y+ RP+  + SPVTDFREA        + Q  GG  NF H KK
Sbjct:  127 RWYSQRPVYAELSPVTDFREACCRQHETSECQR-GGLCNFMHAKK 170          
BLAST of DY261089 vs. ExPASy Swiss-Prot
Match: U2AF1_HUMAN (Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 4.875e-33
Identity = 66/131 (50.38%), Postives = 84/131 (64.12%), Query Frame = 3
Query:  363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMYQRLDMITPGVDAQGNPLDPRKIQ-XXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLS 752
            M E+LASIFGTEKD+VNC FYFKIGACR GDRCSRLH KP+ S T+ L N+Y+     +   D     +   ++Q                KYGE+E +N+CDNL DH+VGNVYV+FR EE A +A+  L+
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLN 131          

HSP 2 Score: 31.5722 bits (70), Expect = 4.875e-33
Identity = 20/45 (44.44%), Postives = 26/45 (57.78%), Query Frame = 1
Query:  757 KFYAGRPIIVDFSPVTDFREANLETIG-GEKMQSVGGTGNFRHPK 888
            +++ G+PI  + SPVTDFREA       GE  +  GG  NF H K
Sbjct:  133 RWFNGQPIHAELSPVTDFREACCRQYEMGECTR--GGFCNFMHLK 175          
BLAST of DY261089 vs. ExPASy Swiss-Prot
Match: U2AF1_MOUSE (Splicing factor U2AF 35 kDa subunit OS=Mus musculus GN=U2af1 PE=2 SV=4)

HSP 1 Score: 131.724 bits (330), Expect = 4.876e-33
Identity = 66/131 (50.38%), Postives = 84/131 (64.12%), Query Frame = 3
Query:  363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMYQRLDMITPGVDAQGNPLDPRKIQ-XXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLS 752
            M E+LASIFGTEKD+VNC FYFKIGACR GDRCSRLH KP+ S T+ L N+Y+     +   D     +   ++Q                KYGE+E +N+CDNL DH+VGNVYV+FR EE A +A+  L+
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLN 131          

HSP 2 Score: 31.5722 bits (70), Expect = 4.876e-33
Identity = 20/45 (44.44%), Postives = 26/45 (57.78%), Query Frame = 1
Query:  757 KFYAGRPIIVDFSPVTDFREANLETIG-GEKMQSVGGTGNFRHPK 888
            +++ G+PI  + SPVTDFREA       GE  +  GG  NF H K
Sbjct:  133 RWFNGQPIHAELSPVTDFREACCRQYEMGECTR--GGFCNFMHLK 175          
BLAST of DY261089 vs. ExPASy Swiss-Prot
Match: U2AF1_BOVIN (Splicing factor U2AF 35 kDa subunit OS=Bos taurus GN=U2AF1 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.876e-33
Identity = 66/131 (50.38%), Postives = 84/131 (64.12%), Query Frame = 3
Query:  363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMYQRLDMITPGVDAQGNPLDPRKIQ-XXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLS 752
            M E+LASIFGTEKD+VNC FYFKIGACR GDRCSRLH KP+ S T+ L N+Y+     +   D     +   ++Q                KYGE+E +N+CDNL DH+VGNVYV+FR EE A +A+  L+
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLN 131          

HSP 2 Score: 31.5722 bits (70), Expect = 4.876e-33
Identity = 20/45 (44.44%), Postives = 26/45 (57.78%), Query Frame = 1
Query:  757 KFYAGRPIIVDFSPVTDFREANLETIG-GEKMQSVGGTGNFRHPK 888
            +++ G+PI  + SPVTDFREA       GE  +  GG  NF H K
Sbjct:  133 RWFNGQPIHAELSPVTDFREACCRQYEMGECTR--GGFCNFMHLK 175          
BLAST of DY261089 vs. ExPASy Swiss-Prot
Match: U2AF4_RAT (Splicing factor U2AF 26 kDa subunit OS=Rattus norvegicus GN=U2af1l4 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.405e-32
Identity = 68/131 (51.91%), Postives = 84/131 (64.12%), Query Frame = 3
Query:  363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMYQRLDMITPGVDAQGNPLDPRKIQ-XXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLS 752
            M E+LASIFGTEKD+VNC FYFKIGACR GDRCSRLH KP+ S T++L N+Y+         D     +   ++Q                KYGEIE +N+CDNL DH+VGNVYV+FR EE A RA+  L+
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELN 131          

HSP 2 Score: 26.1794 bits (56), Expect = 1.405e-32
Identity = 16/43 (37.21%), Postives = 24/43 (55.81%), Query Frame = 1
Query:  757 KFYAGRPIIVDFSPVTDFREANLETIG-GEKMQSVGGTGNFRH 882
            +++ G+ +  + SPVTDFRE+       GE  +  GG  NF H
Sbjct:  133 RWFNGQAVHAELSPVTDFRESCCRQYEMGECTR--GGFCNFMH 173          
The following BLAST results are available for this feature:
BLAST of DY261089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
U2AFA_ARATH1.900e-5362.57Splicing factor U2af small subunit A OS=Arabidopsi... [more]
U2AFA_ORYSJ2.481e-5361.99Splicing factor U2af small subunit A OS=Oryza sati... [more]
U2AFB_ARATH1.153e-5059.06Splicing factor U2af small subunit B OS=Arabidopsi... [more]
U2AFB_ORYSJ9.758e-5057.31Splicing factor U2af small subunit B OS=Oryza sati... [more]
U2AF1_DROME9.969e-3450.38Splicing factor U2af 38 kDa subunit OS=Drosophila ... [more]
U2AF1_SCHPO3.751e-3346.92Splicing factor U2AF 23 kDa subunit OS=Schizosacch... [more]
U2AF1_HUMAN4.875e-3350.38Splicing factor U2AF 35 kDa subunit OS=Homo sapien... [more]
U2AF1_MOUSE4.876e-3350.38Splicing factor U2AF 35 kDa subunit OS=Mus musculu... [more]
U2AF1_BOVIN4.876e-3350.38Splicing factor U2AF 35 kDa subunit OS=Bos taurus ... [more]
U2AF4_RAT1.405e-3251.91Splicing factor U2AF 26 kDa subunit OS=Rattus norv... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP1YK11FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY261089 ID=DY261089; Name=DY261089; organism=Citrus clementina; type=EST; length=1021bp
CACTTTTACCTTTTCTTTTGAGAAGAAACTTTCGTCTAAATTAATATCTG
AAATTCCAAACCCTACTAATTTATATTATCATCTCTCCCATATTCTCATT
TTTTCAGAATAAGGATATAATATAAAAGGTTAGGGATTTCAATGATAATT
TCTTTTATCCGCAGGGACGAAGCGTCTAGAACTATTAGATCCTCGAAACA
GCTTCTCTTAAACGAACATCACAAATCGTAAAGCACTTTCCTCTTCATCG
CGGAGAAGCCAAAGCCACTGCTCCCTTCTTCTCACTACATTCCCCCAAAC
CCCCACGTAAAAAAACGCCGTCGTATTTTTGAATTTGGAGAGATTATATT
TCGAAGCCTGCGATGGTGGAGCACTTGGCGTCGATTTTCGGGACCGAGAA
AGACAGGGTAAACTGTCCGTTTTACTTCAAGATCGGCGCGTGCAGACTCG
GCGACCGATGCTCGCGTCTCCACACGAAGCCCAGTGTCAGCCCCACGCTC
TTGCTTTAGAACATGTACCAGCGGCTCGATATGATCACCCCCGGCGTCGA
CGCGCAGGGCAACCCGCTTGACCCGCGCAAAATCCAAGAACACTTTGAGG
ATTTTTATGAAGATTTGTTTGAGGAACTGAACAAATATGGTGAAATTGAG
AGCCTGAACATCTGTGACAACCTAGCTGATCATATGGTTGGTAATGTTTA
TGTGCAGTTTAGGGAGGAAGAACAAGCTGCCAGAGCACTTAAAAGTCTAA
GTGGGGAAATTTTATGCTGGGCGTCCTATTATTGTCGATTTCTCTCCCGT
AACGGATTTTCGAGAAGCCAACCTGGAAACAATTGGAGGAGAAAAAATGC
AATCGGTGGGGGGTACTGGCAATTTTAGGCACCCTAAAAAGGATTAACAA
GGGAATTTGAGGGGCCCGGCTAATTTTGGAAAAAAAAAACAAAAAAATAA
CCCGTTAACAAAAACCAAAAACACAAAATTCTCTTACGGGCCTTCCCAAC
CCCCTGGAAAAACCCTTCTCT
back to top