DY261104

Overview
NameDY261104
Unique NameDY261104
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length991
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY261104 vs. ExPASy Swiss-Prot
Match: FACR2_ARATH (Fatty acyl-CoA reductase 2 OS=Arabidopsis thaliana GN=FAR2 PE=2 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 6.107e-41
Identity = 100/222 (45.05%), Postives = 141/222 (63.51%), Query Frame = 3
Query:  135 MGALFLNSLS---VAPNKFVKAFENNCDLCLLRKKRSI----MHCQGGGKTTRSSG------VSPALKERSTVTDTAAGS-------LVLSPNGKGHAEIV--VQDLVPFGGQATSLVELQDGIGIVKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFVLIKAKNEEAAMERLKNEIINAELFKCLKQTYGKSYQAFM*SRLVPAVGNVCENNLGIK 734
            M ALFL+S S   VA NK  +   +     ++R K+          GGG   R+S       VS  LK+R  V      S       LVLSPNG G    +  V+ L+PF G   S+V +++G+GI+ FL+ K F +TG+TGFLAKVLIEK+LR  PDV KI++LIKAK++EAA+ERLKNE+++AELF  LK+T+G SY +FM ++L+P  GN+C++N+G++
Sbjct:    1 MEALFLSSSSSSIVASNKLTRLHNHCVWSTVIRDKKRFGPTWCRVGGGGDGGRNSNAERPIRVSSLLKDRGQVLIREQSSPAMDAETLVLSPNGNGRTIEINGVKTLMPFSG--ASMVGMKEGLGIISFLQGKKFLITGSTGFLAKVLIEKVLRMAPDVSKIYLLIKAKSKEAAIERLKNEVLDAELFNTLKETHGASYMSFMLTKLIPVTGNICDSNIGLQ 220          
BLAST of DY261104 vs. ExPASy Swiss-Prot
Match: FACR6_ARATH (Fatty acyl-CoA reductase 6, chloroplastic OS=Arabidopsis thaliana GN=FAR6 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.195e-28
Identity = 60/101 (59.41%), Postives = 87/101 (86.14%), Query Frame = 3
Query:  432 DGIGIVKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFVLIKAKNEEAAMERLKNEIINAELFKCLKQTYGKSYQAFM*SRLVPAVGNVCENNLGIK 734
            DGIGIV+FL+ K++ VTGATGFLAKVLIEK+LR   ++GKIF+L+++K++E+A +RL +EII+++LFK LKQ +G SY+AFM  +L+P +G++ E+NLGIK
Sbjct:   73 DGIGIVRFLEGKSYLVTGATGFLAKVLIEKLLRESLEIGKIFLLMRSKDQESANKRLYDEIISSDLFKLLKQMHGSSYEAFMKRKLIPVIGDIEEDNLGIK 173          
BLAST of DY261104 vs. ExPASy Swiss-Prot
Match: FACR1_ARATH (Fatty acyl-CoA reductase 1 OS=Arabidopsis thaliana GN=FAR1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 7.265e-18
Identity = 45/97 (46.39%), Postives = 71/97 (73.20%), Query Frame = 3
Query:  447 VKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFVLIKAKNEEAAMERLKNEIINAELFKCLKQTYGK-SYQAFM*SRLVPAVGNVCENNLGIK 734
            V+FL  K   +TGA GFLAKVL+EKILR  P+V KI++L++A +E++AM+RL++E++  +LFK L+   G+ +  A M  ++VP  G++  +NLG+K
Sbjct:    6 VQFLGNKTILITGAPGFLAKVLVEKILRLQPNVKKIYLLLRAPDEKSAMQRLRSEVMEIDLFKVLRNNLGEDNLNALMREKIVPVPGDISIDNLGLK 102          
BLAST of DY261104 vs. ExPASy Swiss-Prot
Match: FACR4_ARATH (Probable fatty acyl-CoA reductase 4 OS=Arabidopsis thaliana GN=FAR4 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.789e-16
Identity = 42/97 (43.30%), Postives = 67/97 (69.07%), Query Frame = 3
Query:  447 VKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFVLIKAKNEEAAMERLKNEIINAELFKCLKQTYG-KSYQAFM*SRLVPAVGNVCENNLGIK 734
            ++FL  K   VTG  GFLAKV +EKILR  P V K+F+L++A + E+AM+R  +E++  +LF+ LK   G ++ +AF+  ++VP  G++  +NLG+K
Sbjct:    6 IQFLHDKTILVTGVPGFLAKVFVEKILRIQPKVKKLFLLLRAADNESAMQRFHSEVLEKDLFRVLKNALGDENLKAFITEKVVPIPGDISVDNLGVK 102          
BLAST of DY261104 vs. ExPASy Swiss-Prot
Match: FACR5_ARATH (Probable fatty acyl-CoA reductase 5 OS=Arabidopsis thaliana GN=FAR5 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.337e-16
Identity = 43/99 (43.43%), Postives = 65/99 (65.66%), Query Frame = 3
Query:  438 IGIVKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFVLIKAKNEEAAMERLKNEIINAELFKCLKQTYG-KSYQAFM*SRLVPAVGNVCENNLGI 731
            +  V+FL+ K   VTGATGFLAKV +EKILR  P+V K+++L++A + EAA +RL+ E+   ELFK L+Q  G +     +  ++V   G++  + LGI
Sbjct:    3 LNCVQFLRNKTILVTGATGFLAKVFVEKILRVQPNVKKLYLLVRASDNEAATKRLRTEVFEKELFKVLRQNLGDEKLNTLLYEKVVSVPGDIATDQLGI 101          
BLAST of DY261104 vs. ExPASy Swiss-Prot
Match: FACR8_ARATH (Fatty acyl-CoA reductase 8 OS=Arabidopsis thaliana GN=FAR8 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.881e-16
Identity = 41/97 (42.27%), Postives = 64/97 (65.98%), Query Frame = 3
Query:  447 VKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFVLIKAKNEEAAMERLKNEIINAELFKCLKQTYG-KSYQAFM*SRLVPAVGNVCENNLGIK 734
            V FL+ K   VTGATGFLAKV +EKILR  P+V K++++++A + EAA +RL+ E    +LFK L+   G +     +  ++VP  G++  ++LG+K
Sbjct:    6 VHFLQNKTILVTGATGFLAKVFVEKILRVQPNVNKLYLVVRASDNEAATKRLRTEAFEKDLFKVLRDNLGDEKLNTLLSEKVVPVAGDIAMDHLGMK 102          
BLAST of DY261104 vs. ExPASy Swiss-Prot
Match: FACR3_ARATH (Fatty acyl-CoA reductase 3 OS=Arabidopsis thaliana GN=FAR3 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 9.819e-15
Identity = 35/99 (35.35%), Postives = 63/99 (63.64%), Query Frame = 3
Query:  438 IGIVKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFVLIKAKNEEAAMERLKNEIINAELFKCLKQTYGKSYQAFM*SRLVPAVGNVCENNLGIK 734
            + ++K+L  K+  V GA GFLA + +EKILR  P+V K+++L++A   ++A +R  +EI+  +LFK LK+ YG +       ++    G++C  +LG++
Sbjct:    8 VSVLKYLDNKSILVVGAAGFLANIFVEKILRVAPNVKKLYLLLRASKGKSATQRFNDEILKKDLFKVLKEKYGPNLNQLTSEKITIVDGDICLEDLGLQ 106          
BLAST of DY261104 vs. ExPASy Swiss-Prot
Match: FACR1_DROME (Putative fatty acyl-CoA reductase CG5065 OS=Drosophila melanogaster GN=CG5065 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.957e-12
Identity = 36/101 (35.64%), Postives = 61/101 (60.40%), Query Frame = 3
Query:  438 IGIVKFLKAKNFFVTGATGFLAKVLIEKILRTVPDVGKIFVLIKAKNEEAAMERLKNEIINAELFKCLKQTYGKSYQAFM*SRLVPAVGNVCENNLGIKRR 740
            + I +F   ++ F+TG TGF+ KVL+EK+LR+ P++  I++LI+ K  +    RL  E++NA LF+ L+Q   K       S+++P  G++    LGI  +
Sbjct:  117 VPIAQFYAGRSVFITGGTGFMGKVLVEKLLRSCPEIRNIYLLIRPKRGQEVSARL-TELLNAPLFESLRQEKPKEL-----SKVIPISGDITSEELGISEK 211          
The following BLAST results are available for this feature:
BLAST of DY261104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
FACR2_ARATH6.107e-4145.05Fatty acyl-CoA reductase 2 OS=Arabidopsis thaliana... [more]
FACR6_ARATH1.195e-2859.41Fatty acyl-CoA reductase 6, chloroplastic OS=Arabi... [more]
FACR1_ARATH7.265e-1846.39Fatty acyl-CoA reductase 1 OS=Arabidopsis thaliana... [more]
FACR4_ARATH1.789e-1643.30Probable fatty acyl-CoA reductase 4 OS=Arabidopsis... [more]
FACR5_ARATH2.337e-1643.43Probable fatty acyl-CoA reductase 5 OS=Arabidopsis... [more]
FACR8_ARATH8.881e-1642.27Fatty acyl-CoA reductase 8 OS=Arabidopsis thaliana... [more]
FACR3_ARATH9.819e-1535.35Fatty acyl-CoA reductase 3 OS=Arabidopsis thaliana... [more]
FACR1_DROME5.957e-1235.64Putative fatty acyl-CoA reductase CG5065 OS=Drosop... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP1YL05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY261104 ID=DY261104; Name=DY261104; organism=Citrus clementina; type=EST; length=991bp
TCTGCTCTTTTGATCAAGAAACCTAACCTAACCTAACCAAACCCTCTTCT
TATGTTTTTATAGAGATCAGTTAGTTTACTTGTTTATTTTTATTTTTATT
TTTTTGGCTTTCAGGAAGTGTGGCGGTGGAGATGATGGGGGCTTTGTTCC
TTAACTCCCTCTCAGTTGCACCAAATAAATTTGTCAAAGCCTTTGAGAAC
AATTGTGACCTGTGCTTGCTGAGGAAGAAAAGAAGCATAATGCATTGCCA
AGGTGGTGGCAAAACGACACGGTCCAGCGGCGTTTCTCCGGCTTTGAAAG
AGAGATCAACGGTAACGGATACAGCTGCTGGAAGCTTAGTTTTATCTCCG
AATGGGAAAGGCCATGCTGAGATTGTTGTTCAAGATTTGGTGCCTTTTGG
TGGACAAGCCACTTCTTTGGTAGAGTTGCAAGATGGAATTGGCATTGTCA
AATTTCTCAAAGCCAAAAATTTTTTCGTTACTGGGGCAACTGGGTTTCTA
GCAAAGGTGCTTATAGAGAAGATTTTACGAACGGTACCTGATGTGGGCAA
GATCTTTGTGCTGATCAAGGCAAAAAATGAAGAGGCTGCAATGGAGAGAT
TGAAAAATGAAATTATTAATGCAGAGCTTTTCAAGTGTCTGAAGCAAACT
TATGGAAAATCCTACCAAGCTTTCATGTAAAGCAGGCTGGTTCCTGCGGT
AGGAAACGTTTGTGAAAATAATCTTGGGATAAAAAGAAGATTTAGCTGAT
GTGATTGCGAAAAGAAATTGACGTAATTTGTAAATTTCCGCGGCTAAATA
CAACTTTTGATGAAAAAAAAGAAATTTGCTATTGATAATAAACACCAGGG
GGACCTTGCCGGGCAATGGGAGTTTTGCAAAAGCATGGCAAAAAAATTTA
AACCTTCTTTGTGCAGTTATCCACCCGCTTAACGTAAATGGGAAAAAAGA
AGGAAGGAAAAATTTAGGGAAAAAGCCCTTTTTTTGCTGGG
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