DY262501

Overview
NameDY262501
Unique NameDY262501
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262501 vs. ExPASy Swiss-Prot
Match: FCL1_ARATH (GDP-L-fucose synthase 1 OS=Arabidopsis thaliana GN=GER1 PE=1 SV=2)

HSP 1 Score: 236.498 bits (602), Expect = 1.186e-61
Identity = 118/163 (72.39%), Postives = 137/163 (84.05%), Query Frame = 1
Query:    1 QAYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEHLNVGSGKEVSIKELAELVREVVGFEGELVWD--HPSQMEREKADG*SKLAGLGVKGKIELKDGLADTYNGTLKMVSN 483
            QAY+IQ+ ++AISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGA+EVVVWGTGSPLREFLHVDDLADA VF++D Y GLEH+N+GSG+EV+I+ELAELV+EVVGFEG+L WD   P    R+  D  SKLA LG   K+ L+DGL+ TY+  LK V N
Sbjct:  150 QAYRIQHGWDAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAEEVVVWGTGSPLREFLHVDDLADACVFLLDRYSGLEHVNIGSGQEVTIRELAELVKEVVGFEGKLGWDCTKPDGTPRKLMDS-SKLASLGWTPKVSLRDGLSQTYDWYLKNVCN 311          
BLAST of DY262501 vs. ExPASy Swiss-Prot
Match: FCL2_ARATH (Putative GDP-L-fucose synthase 2 OS=Arabidopsis thaliana GN=GER2 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 7.198e-59
Identity = 115/161 (71.43%), Postives = 132/161 (81.99%), Query Frame = 1
Query:    1 QAYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEHLNVGSGKEVSIKELAELVREVVGFEGELVWD--HPSQMEREKADG*SKLAGLGVKGKIELKDGLADTYNGTLKMV 477
            QAY++Q++++AISGMPTNLYG NDNFHPENSHVLPALMRRFHEAK N A EVVVWG+GSPLREFLHVDDLADA VF+MD+Y G EH+NVGSG EV+IKELAELV+EVVGF+G+LVWD   P    R+  D  SKLA LG   KI LKDGL+ TY   L+ V
Sbjct:  164 QAYRLQHQWDAISGMPTNLYGQNDNFHPENSHVLPALMRRFHEAKANNADEVVVWGSGSPLREFLHVDDLADACVFLMDQYSGFEHVNVGSGVEVTIKELAELVKEVVGFKGKLVWDTTKPDGTPRKLMDS-SKLASLGWTPKISLKDGLSQTYEWYLENV 323          
BLAST of DY262501 vs. ExPASy Swiss-Prot
Match: FCL1_ORYSJ (Probable GDP-L-fucose synthase 1 OS=Oryza sativa subsp. japonica GN=Os06g0652400 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.572e-58
Identity = 112/164 (68.29%), Postives = 133/164 (81.10%), Query Frame = 1
Query:    1 QAYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEHLNVGSGKEVSIKELAELVREVVGFEGELVWD--HPSQMEREKADG*SKLAGLGVKGKIELKDGLADTYNGTLKMVSNA 486
            QAY+IQ+ F+AIS MPTNLYGP DNFHPENSHVLPAL+RRFHEAK + A EVVVWGTGSPLREFLHVDDLADAV+F+MD Y GLEH+NVGSG EV+IKELAELV+EVVGF+G+LVWD   P    R+  D  SK+  +G K K+ LK+GL +TY   ++ V +A
Sbjct:  164 QAYRIQHGFDAISAMPTNLYGPQDNFHPENSHVLPALIRRFHEAKASNAAEVVVWGTGSPLREFLHVDDLADAVIFLMDHYSGLEHVNVGSGSEVTIKELAELVKEVVGFQGKLVWDSSKPDGTPRKLMDS-SKIQEMGWKPKVPLKEGLVETYKWYVENVISA 326          
BLAST of DY262501 vs. ExPASy Swiss-Prot
Match: FCL2_ORYSJ (Putative GDP-L-fucose synthase 2 OS=Oryza sativa subsp. japonica GN=Os06g0652300 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.840e-41
Identity = 82/159 (51.57%), Postives = 111/159 (69.81%), Query Frame = 1
Query:    1 QAYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEHLNVGSGKEVSIKELAELVREVVGFEGELVWD--HPSQMEREKADG*SKLAGLGVKGKIELKDGLADTYNGTLK 471
            QA + +Y  +AI+  P NLYGP   F PE+SHV+PAL+RRFH AK+ GA EV VWG+G+  REF HVDDLA+AVV +M+ Y G EH+NVGSG+EV+++ELAE VR VVG+EG + WD   P  + R   D   ++  LG + ++ L+DG+ D Y   L+
Sbjct:  180 QAVRAEYGLDAIAAAPNNLYGPRHPFPPEHSHVIPALIRRFHRAKLEGAGEVAVWGSGAAAREFTHVDDLAEAVVVLMERYSGEEHVNVGSGEEVTVRELAEAVRGVVGYEGVVAWDAARPEGVARRVVDS-GRMRKLGWEPRVALRDGIQDLYRFYLR 337          
BLAST of DY262501 vs. ExPASy Swiss-Prot
Match: FCL_ECOLI (GDP-L-fucose synthetase OS=Escherichia coli (strain K12) GN=fcl PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 9.466e-35
Identity = 79/168 (47.02%), Postives = 111/168 (66.07%), Query Frame = 1
Query:    1 QAYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMD---------EYDGLEHLNVGSGKEVSIKELAELVREVVGFEGELVWD--HPSQMEREKADG*SKLAGLGVKGKIELKDGLADTYNGTLK 471
            ++Y  QY  +  S MPTNLYGP+DNFHP NSHV+PAL+RRFHEA    A +VVVWG+G+P+REFLHVDD+A A + +M+             L H+NVG+G + +I+ELA+ + +VVG++G +V+D   P    R+  D  ++L  LG   +I L+ GLA TY   L+
Sbjct:  148 ESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDV-TRLHQLGWYHEISLEAGLASTYQWFLE 314          
BLAST of DY262501 vs. ExPASy Swiss-Prot
Match: Y4AF_RHISN (Uncharacterized protein y4aF OS=Rhizobium sp. (strain NGR234) GN=NGR_a00420 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.367e-33
Identity = 73/163 (44.79%), Postives = 107/163 (65.64%), Query Frame = 1
Query:    1 QAYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEHLNVGSGKEVSIKELAELVREVVGFEGELVWD--HPSQMEREKADG*SKLAGLGVKGKIELKDGLADTYNGTLKMVSN 483
            QAY+ QY  N IS MPTNLYGP D F   +SHV+PAL+R+ HEAK+     + +WG+G+P R+FL+ +D +DA+VF++  Y   EH+N+GSG E+SI ELA +V  VVGF+G++V+D   P    R+      +L  +G + K  L+ GLA +Y   +  V++
Sbjct:  152 QAYRKQYGANFISAMPTNLYGPRDKFDLNSSHVVPALIRKAHEAKIKDLGCLSIWGSGTPTRDFLYSEDCSDALVFLLKHYSETEHINIGSGGEISIIELAHIVCRVVGFKGDIVFDTSKPDGTPRKLLSS-ERLVSMGWRPKTSLELGLAKSYESFVSNVAD 313          
BLAST of DY262501 vs. ExPASy Swiss-Prot
Match: FCL_PONAB (GDP-L-fucose synthetase OS=Pongo abelii GN=TSTA3 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.957e-21
Identity = 60/148 (40.54%), Postives = 88/148 (59.46%), Query Frame = 1
Query:    1 QAYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEH--LNVGSGKEVSIKELAELVREVVGFEGELVWDHPSQMEREKADG*SKLAGLGVKGKIELKD 438
            +AY  QY     + +PTN++GP+DNF+ E+ HVLP L+ + H AK +G+  + VWGTG P R+F++  DLA   ++++ EY+ +E   L+VG   EVSIKE AE V E + F GE+ +D        K+DG  K      K +  L D
Sbjct:  155 RAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGS-ALTVWGTGKPRRQFIYSLDLAQLFIWVLREYNEVEPIILSVGEDDEVSIKEAAEAVVEAMDFHGEVTFD------TTKSDGQFKKTASNSKLRTYLPD 295          
BLAST of DY262501 vs. ExPASy Swiss-Prot
Match: FCL_HUMAN (GDP-L-fucose synthetase OS=Homo sapiens GN=TSTA3 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.957e-21
Identity = 60/148 (40.54%), Postives = 89/148 (60.14%), Query Frame = 1
Query:    1 QAYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEH--LNVGSGKEVSIKELAELVREVVGFEGELVWDHPSQMEREKADG*SKLAGLGVKGKIELKD 438
            +AY  QY     + +PTN++GP+DNF+ E+ HVLP L+ + H AK +G+  + VWGTG+P R+F++  DLA   ++++ EY+ +E   L+VG   EVSIKE AE V E + F GE+ +D        K+DG  K      K +  L D
Sbjct:  155 RAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGS-ALTVWGTGNPRRQFIYSLDLAQLFIWVLREYNEVEPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVTFD------TTKSDGQFKKTASNSKLRTYLPD 295          
BLAST of DY262501 vs. ExPASy Swiss-Prot
Match: FCL_CRIGR (GDP-L-fucose synthetase OS=Cricetulus griseus GN=TSTA3 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.043e-20
Identity = 53/119 (44.54%), Postives = 79/119 (66.39%), Query Frame = 1
Query:    1 QAYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEH--LNVGSGKEVSIKELAELVREVVGFEGELVWD 351
            +AY  Q+     + +PTN++GP+DNF+ E+ HVLP L+ + H AK NG+  + VWGTG P R+F++  DLA   ++++ EY+ +E   L+VG   EVSIKE AE V E + F GE+ +D
Sbjct:  155 RAYFQQHGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSNGS-ALTVWGTGKPRRQFIYSLDLARLFIWVLREYNEVEPIILSVGEEDEVSIKEAAEAVVEAMDFCGEVTFD 272          
BLAST of DY262501 vs. ExPASy Swiss-Prot
Match: FCL_MOUSE (GDP-L-fucose synthetase OS=Mus musculus GN=Tsta3 PE=2 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.242e-18
Identity = 51/119 (42.86%), Postives = 75/119 (63.03%), Query Frame = 1
Query:    1 QAYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEH--LNVGSGKEVSIKELAELVREVVGFEGELVWD 351
            +AY  Q+     + +PTN++GP DNF+ E+ HVLP L+ + H AK +    + VWGTG P R+F++  DLA   ++++ EY  +E   L+VG   EVSIKE AE V E + F GE+ +D
Sbjct:  155 RAYFQQHGCTFTAVIPTNVFGPYDNFNIEDGHVLPGLIHKVHLAK-SSDSALTVWGTGKPRRQFIYSLDLARLFIWVLREYSEVEPIILSVGEEDEVSIKEAAEAVVEAMDFNGEVTFD 272          
The following BLAST results are available for this feature:
BLAST of DY262501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
FCL1_ARATH1.186e-6172.39GDP-L-fucose synthase 1 OS=Arabidopsis thaliana GN... [more]
FCL2_ARATH7.198e-5971.43Putative GDP-L-fucose synthase 2 OS=Arabidopsis th... [more]
FCL1_ORYSJ3.572e-5868.29Probable GDP-L-fucose synthase 1 OS=Oryza sativa s... [more]
FCL2_ORYSJ8.840e-4151.57Putative GDP-L-fucose synthase 2 OS=Oryza sativa s... [more]
FCL_ECOLI9.466e-3547.02GDP-L-fucose synthetase OS=Escherichia coli (strai... [more]
Y4AF_RHISN1.367e-3344.79Uncharacterized protein y4aF OS=Rhizobium sp. (str... [more]
FCL_PONAB5.957e-2140.54GDP-L-fucose synthetase OS=Pongo abelii GN=TSTA3 P... [more]
FCL_HUMAN5.957e-2140.54GDP-L-fucose synthetase OS=Homo sapiens GN=TSTA3 P... [more]
FCL_CRIGR5.043e-2044.54GDP-L-fucose synthetase OS=Cricetulus griseus GN=T... [more]
FCL_MOUSE1.242e-1842.86GDP-L-fucose synthetase OS=Mus musculus GN=Tsta3 P... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AF04RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262501 ID=DY262501; Name=DY262501; organism=Citrus clementina; type=EST; length=751bp
CAGGCTTATCAGATTCAGTATAAATTCAATGCAATTTCTGGGATGCCCAC
GAATTTATATGGCCCCAATGATAATTTCCACCCCGAAAACTCCCACGTGT
TACCCGCTTTGATGAGGAGATTCCACGAAGCTAAGGTGAATGGAGCTAAG
GAAGTGGTGGTGTGGGGCACTGGCAGTCCGTTAAGGGAGTTCTTACACGT
TGATGATTTGGCTGATGCAGTGGTTTTCATGATGGACGAGTATGATGGAC
TTGAACATTTGAATGTGGGGAGTGGGAAGGAAGTGAGCATTAAAGAGTTG
GCGGAGTTGGTGAGGGAAGTAGTGGGATTTGAAGGAGAGCTTGTTTGGGA
TCATCCAAGCCAGATGGAACGCGAGAAAGCTGATGGATAGTCTAAGCTTG
CCGGGTTGGGGGTGAAAGGCAAGATTGAACTTAAAGATGGGCTTGCTGAT
ACTTATAATGGTACTTTGAAAATGGTAAGCAATGCTGGGTAATAACCTGG
GTCATTTTTGGGGTGGTTTATTAAAATTATTGGGTTTCTTTGAAAAAAAA
TAGAATTGATTGGGGGCCCATTATGAAATTAAGGGGGTTATAAAATAAAG
GAAGAAAAAAATTGGTAAAAAAAAATTTTTGAGAACCAAACTTTTTTTGT
GTTTAAATTGTAGAAAAAAAATAAAATTTTTTTTTTTTGGGGGATTTATA
ATTTTTGGTTTTTTTCGGCGGAAAAATAATATTTATTTTTTTTTTTTTAT
A
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