DY262504

Overview
NameDY262504
Unique NameDY262504
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1327
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY262504 vs. ExPASy Swiss-Prot
Match: RAC1_ARATH (Rac-like GTP-binding protein ARAC1 OS=Arabidopsis thaliana GN=ARAC1 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 7.904e-44
Identity = 91/130 (70.00%), Postives = 101/130 (77.69%), Query Frame = 1 
Query:  457 MTASRFINCGTVGKGPVGKNCLLISYTSNTFPTDYVPPVFDNFSANVVVNGSTVNLVLWDTAGQENYNKVKPLIKPDENVFILAFSLISK*SYKIVSKNCIPNVKHNTLCAQ*NLVGRNLDLRVNKQFLI 846
            M+ASRFI C TVG G VGK CLLISYTSNTFPTDYVP VFDNFSANVVVNG+TVNL LWDTAGQE+YN+++PL     +VFILAFSLISK SY+ VSK  IP +KH        LVG  LDLR +KQF I
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFI 130

HSP 2 Score: 26.5646 bits (57), Expect = 7.904e-44
Identity = 17/40 (42.50%), Postives = 21/40 (52.50%), Query Frame = 2 
Query:  845 FIDRY-AEPIIRTQGEELKKVNWTTSLIGIHLKTKAKFRG 961
            FID   A PI   QGEELKK+    + I    KT+   +G
Sbjct:  129 FIDHPGAVPITTAQGEELKKLIGAPAYIECSSKTQENVKG 168
[Close]
BLAST of DY262504 vs. ExPASy Swiss-Prot
Match: RAC6_ARATH (Rac-like GTP-binding protein ARAC6 OS=Arabidopsis thaliana GN=ARAC6 PE=1 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 2.279e-43
Identity = 91/130 (70.00%), Postives = 101/130 (77.69%), Query Frame = 1 
Query:  457 MTASRFINCGTVGKGPVGKNCLLISYTSNTFPTDYVPPVFDNFSANVVVNGSTVNLVLWDTAGQENYNKVKPLIKPDENVFILAFSLISK*SYKIVSKNCIPNVKHNTLCAQ*NLVGRNLDLRVNKQFLI 846
            M+ASRFI C TVG G VGK CLLISYTSNTFPTDYVP VFDNFSANVVVNG+TVNL LWDTAGQE+YN+++PL     +VFILAFSLISK SY+ VSK  IP +KH        LVG  LDLR +KQF I
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFI 130

HSP 2 Score: 25.0238 bits (53), Expect = 2.279e-43
Identity = 16/40 (40.00%), Postives = 21/40 (52.50%), Query Frame = 2 
Query:  845 FIDRY-AEPIIRTQGEELKKVNWTTSLIGIHLKTKAKFRG 961
            FID   A PI   QGEELKK+    + I    K++   +G
Sbjct:  129 FIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKG 168
[Close]
BLAST of DY262504 vs. ExPASy Swiss-Prot
Match: RAC1_BETVU (Rac-like GTP-binding protein RHO1 OS=Beta vulgaris GN=RHO1 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.454e-42
Identity = 91/130 (70.00%), Postives = 101/130 (77.69%), Query Frame = 1 
Query:  457 MTASRFINCGTVGKGPVGKNCLLISYTSNTFPTDYVPPVFDNFSANVVVNGSTVNLVLWDTAGQENYNKVKPLIKPDENVFILAFSLISK*SYKIVSKNCIPNVKHNTLCAQ*NLVGRNLDLRVNKQFLI 846
            M+ASRFI C TVG G VGK CLLISYTSNTFPTDYVP VFDNFSANVVVNG+TVNL LWDTAGQE+YN+++PL     +VFILAFSLISK SY+ VSK  IP +KH        LVG  LDLR +KQF I
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFI 130

HSP 2 Score: 22.3274 bits (46), Expect = 1.454e-42
Identity = 16/38 (42.11%), Postives = 20/38 (52.63%), Query Frame = 3 
Query:  882 RGKN*RK*IGQLP*LVSISKPKQNSGAVFFAPFLVGLQ 995
            +G+  RK IG    +   SK +QN  AVF A   V LQ
Sbjct:  142 QGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQ 179
[Close]
BLAST of DY262504 vs. ExPASy Swiss-Prot
Match: RHO1_PEA (Rac-like GTP-binding protein RHO1 OS=Pisum sativum GN=RHO1 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.669e-42
Identity = 91/130 (70.00%), Postives = 101/130 (77.69%), Query Frame = 1 
Query:  457 MTASRFINCGTVGKGPVGKNCLLISYTSNTFPTDYVPPVFDNFSANVVVNGSTVNLVLWDTAGQENYNKVKPLIKPDENVFILAFSLISK*SYKIVSKNCIPNVKHNTLCAQ*NLVGRNLDLRVNKQFLI 846
            M+ASRFI C TVG G VGK CLLISYTSNTFPTDYVP VFDNFSANVVVNGSTVNL LWDTAGQE+YN+++PL     +VFILAFSLISK SY+ VSK  IP +KH        LVG  LDLR +KQF +
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFV 130
[Close]
BLAST of DY262504 vs. ExPASy Swiss-Prot
Match: RAC11_ARATH (Rac-like GTP-binding protein ARAC11 OS=Arabidopsis thaliana GN=ARAC11 PE=1 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 1.669e-42
Identity = 91/130 (70.00%), Postives = 101/130 (77.69%), Query Frame = 1 
Query:  457 MTASRFINCGTVGKGPVGKNCLLISYTSNTFPTDYVPPVFDNFSANVVVNGSTVNLVLWDTAGQENYNKVKPLIKPDENVFILAFSLISK*SYKIVSKNCIPNVKHNTLCAQ*NLVGRNLDLRVNKQFLI 846
            M+ASRF+ C TVG G VGK CLLISYTSNTFPTDYVP VFDNFSANVVVNGSTVNL LWDTAGQE+YN+++PL     +VFILAFSLISK SY+ VSK  IP +KH        LVG  LDLR +KQF I
Sbjct:    1 MSASRFVKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFI 130
[Close]
BLAST of DY262504 vs. ExPASy Swiss-Prot
Match: RAC5_ORYSJ (Rac-like GTP-binding protein 5 OS=Oryza sativa subsp. japonica GN=RAC5 PE=2 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.209e-41
Identity = 87/130 (66.92%), Postives = 101/130 (77.69%), Query Frame = 1 
Query:  457 MTASRFINCGTVGKGPVGKNCLLISYTSNTFPTDYVPPVFDNFSANVVVNGSTVNLVLWDTAGQENYNKVKPLIKPDENVFILAFSLISK*SYKIVSKNCIPNVKHNTLCAQ*NLVGRNLDLRVNKQFLI 846
            M+ASRFI C TVG G VGK C+LISYTSNTFPTDYVP VFDNFSANVVV+GSTVNL LWDTAGQE+YN+++PL     +VF+LAFSLISK SY+ VSK  IP ++H        LVG  LDLR +KQF +
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFV 130

HSP 2 Score: 23.0978 bits (48), Expect = 1.209e-41
Identity = 16/38 (42.11%), Postives = 20/38 (52.63%), Query Frame = 3 
Query:  882 RGKN*RK*IGQLP*LVSISKPKQNSGAVFFAPFLVGLQ 995
            +G+  RK IG    +   SK +QN  AVF A   V LQ
Sbjct:  142 QGEELRKLIGAAAYIECSSKTQQNIKAVFDAAIKVVLQ 179
[Close]
BLAST of DY262504 vs. ExPASy Swiss-Prot
Match: RAC5_ARATH (Rac-like GTP-binding protein ARAC5 OS=Arabidopsis thaliana GN=ARAC5 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.053e-41
Identity = 87/130 (66.92%), Postives = 101/130 (77.69%), Query Frame = 1 
Query:  457 MTASRFINCGTVGKGPVGKNCLLISYTSNTFPTDYVPPVFDNFSANVVVNGSTVNLVLWDTAGQENYNKVKPLIKPDENVFILAFSLISK*SYKIVSKNCIPNVKHNTLCAQ*NLVGRNLDLRVNKQFLI 846
            M+ASRFI C TVG G VGK C+LISYTSNTFPTDYVP VFDNFSANVVV+G+TVNL LWDTAGQE+YN+++PL     +VFILAFSLISK SY+ V+K  IP ++H        LVG  LDLR +KQF I
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFI 130

HSP 2 Score: 23.483 bits (49), Expect = 2.053e-41
Identity = 16/35 (45.71%), Postives = 19/35 (54.29%), Query Frame = 2 
Query:  845 FIDRY-AEPIIRTQGEELKKVNWTTSLIGIHLKTK 946
            FID   A PI   QGEELKK+  +   I    KT+
Sbjct:  129 FIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQ 163
[Close]
BLAST of DY262504 vs. ExPASy Swiss-Prot
Match: RAC6_ORYSJ (Rac-like GTP-binding protein 6 OS=Oryza sativa subsp. japonica GN=RAC6 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.111e-41
Identity = 87/130 (66.92%), Postives = 101/130 (77.69%), Query Frame = 1 
Query:  457 MTASRFINCGTVGKGPVGKNCLLISYTSNTFPTDYVPPVFDNFSANVVVNGSTVNLVLWDTAGQENYNKVKPLIKPDENVFILAFSLISK*SYKIVSKNCIPNVKHNTLCAQ*NLVGRNLDLRVNKQFLI 846
            M+ASRFI C TVG G VGK C+LISYTSNTFPTDYVP VFDNFSANVVV+G+TVNL LWDTAGQE+YN+++PL     +VF+LAFSLISK SY+ VSK  IP +KH        LVG  LDLR +KQF +
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFV 130
[Close]
BLAST of DY262504 vs. ExPASy Swiss-Prot
Match: RAC13_GOSHI (Rac-like GTP-binding protein RAC13 OS=Gossypium hirsutum GN=RAC13 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 4.542e-41
Identity = 85/130 (65.38%), Postives = 100/130 (76.92%), Query Frame = 1 
Query:  457 MTASRFINCGTVGKGPVGKNCLLISYTSNTFPTDYVPPVFDNFSANVVVNGSTVNLVLWDTAGQENYNKVKPLIKPDENVFILAFSLISK*SYKIVSKNCIPNVKHNTLCAQ*NLVGRNLDLRVNKQFLI 846
            M+ +RFI C TVG G VGK C+LISYTSNTFPTDYVP VFDNFSANVVV+GSTVNL LWDTAGQE+YN+++PL     +VF+LAFSLISK SY+ + K  IP ++H        LVG  LDLR +KQFLI
Sbjct:    1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIYKKWIPELRHYAHNVPVVLVGTKLDLRDDKQFLI 130

HSP 2 Score: 24.6386 bits (52), Expect = 4.542e-41
Identity = 13/29 (44.83%), Postives = 17/29 (58.62%), Query Frame = 2 
Query:  860 AEPIIRTQGEELKKVNWTTSLIGIHLKTK 946
            A PI  +QGEELKK+    + I    KT+
Sbjct:  135 ATPISTSQGEELKKMIGAVTYIECSSKTQ 163
[Close]
BLAST of DY262504 vs. ExPASy Swiss-Prot
Match: RAC3_ARATH (Rac-like GTP-binding protein ARAC3 OS=Arabidopsis thaliana GN=ARAC3 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 5.916e-41
Identity = 83/128 (64.84%), Postives = 100/128 (78.12%), Query Frame = 1 
Query:  457 MTASRFINCGTVGKGPVGKNCLLISYTSNTFPTDYVPPVFDNFSANVVVNGSTVNLVLWDTAGQENYNKVKPLIKPDENVFILAFSLISK*SYKIVSKNCIPNVKHNTLCAQ*NLVGRNLDLRVNKQF 840
            M+ASRFI C TVG G VGK CLLISYTSNTFPTDYVP VFDNFSANV+V+G+T+NL LWDTAGQE+YN+++PL     +VF+LAFSL+SK SY+ VSK  +P ++H        LVG  LDLR +KQF
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVIVDGNTINLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLVSKASYENVSKKWVPELRHYAPGVPIILVGTKLDLRDDKQF 128

HSP 2 Score: 23.8682 bits (50), Expect = 5.916e-41
Identity = 13/29 (44.83%), Postives = 16/29 (55.17%), Query Frame = 2 
Query:  860 AEPIIRTQGEELKKVNWTTSLIGIHLKTK 946
            A PI   QGEELKK+    + I    KT+
Sbjct:  135 AVPISTAQGEELKKLIGAPAYIECSAKTQ 163
The following BLAST results are available for this feature:
BLAST of DY262504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
RAC1_ARATH7.904e-4470.00Rac-like GTP-binding protein ARAC1 OS=Arabidopsis ... [more]
RAC6_ARATH2.279e-4370.00Rac-like GTP-binding protein ARAC6 OS=Arabidopsis ... [more]
RAC1_BETVU1.454e-4270.00Rac-like GTP-binding protein RHO1 OS=Beta vulgaris... [more]
RHO1_PEA1.669e-4270.00Rac-like GTP-binding protein RHO1 OS=Pisum sativum... [more]
RAC11_ARATH1.669e-4270.00Rac-like GTP-binding protein ARAC11 OS=Arabidopsis... [more]
RAC5_ORYSJ1.209e-4166.92Rac-like GTP-binding protein 5 OS=Oryza sativa sub... [more]
RAC5_ARATH2.053e-4166.92Rac-like GTP-binding protein ARAC5 OS=Arabidopsis ... [more]
RAC6_ORYSJ4.111e-4166.92Rac-like GTP-binding protein 6 OS=Oryza sativa sub... [more]
RAC13_GOSHI4.542e-4165.38Rac-like GTP-binding protein RAC13 OS=Gossypium hi... [more]
RAC3_ARATH5.916e-4164.84Rac-like GTP-binding protein ARAC3 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AF07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262504 ID=DY262504; Name=DY262504; organism=Citrus clementina; type=EST; length=1327bp
AGTTTGTTGGCGAAGATTGGTTCGCTCAACGAACGCTTCAACGGCATTAT
TTCCCGGCCGAAACAAGGTTCCTTTTCTACCATTTTCTCTCAATCTTCAC
CTCCTCCCTCTTCATTTCCAAAAAATTTACTTTCCCTTTTTTTTTTCTTT
TTTCCTTTTTGATCGATTGTCGCACTCTGCCGGTCCTTCCCCCCCCCCAC
CCCCCCTTCCCAACGTCGTTTCGTCGCCCCAGCTCTCTTTGTATTTTCTT
GAAATTTTTTCTTCTTGGTGAAATTTTCTGGGGTTTCGTTGAAAATTTCC
CTTTGTTTTGTTTTTTACTCAGCAGATGATGGCTAATTGAATTTACGCTT
GCGATCGCGGTTCTCCTCAGGTGTTGGGATCTGAGGGTTGCTTGTTCTTT
TCTCTGAAAGTTTATATTTTGGTAACTAAAAAGCCACTGTCTTAAAAAAA
AAAAAAATGACCGCATCAAGGTTTATAAATTGCGGGACGGTCGGCAAGGG
ACCTGTGGGTAAAAATTGTTTGCTGATTTCTTACACCAGCAACACTTTCC
CTACGGATTATGTGCCACCTGTGTTTGATAATTTCAGTGCAAATGTGGTT
GTCAATGGGAGCACGGTTAATCTTGTATTATGGGATACAGCAGGACAAGA
GAATTATAACAAAGTAAAACCTTTAATTAAACCAGATGAAAATGTTTTCA
TTCTTGCATTCTCTCTTATAAGCAAATAAAGTTATAAAATTGTATCCAAA
AATTGTATTCCTAATGTGAAACATAATACACTGTGTGCGCAATGAAATCT
TGTTGGCAGAAATCTTGATCTTCGGGTAAATAAACAGTTCTTAATTTATC
GATCGGTATGCGGAGCCTATTATTAGAACTCAGGGGGAAGAACTGAAGAA
AGTAAATTGGACAACTTCCTTAATTGGTATCCATCTCAAAACCAAAGCAA
AATTCAGGGGCTGTGTTTTTTGCACCTTTCTTAGTTGGCCTCCAACCACC
AAAAAAAAAAAAAAAAAAAAAAACAACCCCAAAAGGGCTCTGCCCATATT
TATAATAAAAATAAAATGAAAAAAAGAAAAAAACCTTCGTTCATTTTTAA
ATTTCTCCCTATTTTTTCACCTTTTCTCCTTGAAAAAAAATTCAAATGAA
AAAAAATGAAAGATATCCCCCCAAAAAATATAAGGGGTGTTTTTTATTTT
GTTTGTGGGGAATTGTTGTGTAACAGGTCTCTAATTTTTTAAAAAAAATT
ATAAAAAATGATATAGAACGCCCGCTTGTGTTTCCTCTCTCGGGGAAATC
TCTATTATAGTTAAAATTTATATAATA
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