DY262505

Overview
NameDY262505
Unique NameDY262505
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1315
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY262505 vs. ExPASy Swiss-Prot
Match: ARR1_ARATH (Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 5.718e-11
Identity = 52/141 (36.88%), Postives = 66/141 (46.81%), Query Frame = 1 
Query:  655 RKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVESHLQKYRLHTRRPSPAMHNGGNPQAPHFV----------VVGGIGVQAPEYAAVAGQAPGGSKL*WHQPTESMAPVAGTPPAVPQSSASVVEI 1047
            +K R  WS ELH++F+ A+ QLG    A PK+I ELMNV GLT + V SHLQKYR++ RR      + GN                  + G  +QA    AV GQ P  S        +  A   G P  V +S   V  I
Sbjct:  236 KKPRVVWSVELHQQFVAAVNQLG-VEKAVPKKILELMNVPGLTRENVASHLQKYRIYLRRLGGVSQHQGNLNNSFMTGQDASFGPLSTLNGFDLQA---LAVTGQLPAQSL------AQLQAAGLGRPAMVSKSGLPVSSI 366
The following BLAST results are available for this feature:
BLAST of DY262505 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ARR1_ARATH5.718e-1136.88Two-component response regulator ARR1 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA100AF08RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262505 ID=DY262505; Name=DY262505; organism=Citrus clementina; type=EST; length=1315bp
TCAGACACCATGGATTACGCGGAAAAAATGCAGAGGTGTCACGAGTATGT
GGAAGCCTTAGAAGAAGAAAAACGAAAGATTCAAGTCTTTCAACGCGAAC
TTCCTTTGTGCTTGGAGCTCGTAACGCAAGCAATTCAAGCATGCAGGAGG
GAGTTATCCGGTACGACGACCGAGTACATGCATGTACAATCGGAGTGTTC
GGAGCAAACATCAAGTGACGGTCCTATCCTGGAAGAATTTATTCCTATCA
AAAGGAGTTCATCCCATGATGATAATGATAATGATAATGATGACCGACAT
TCAAACAGGCCTACTACTACAAACAATAATAGGGAAAAAGAAAAGAACAG
TGACAAGAAAAAATCAGACTGGCTTAGATCTGTCCAATTGTGGAATCAAT
CCCCAGATCCACAACCTAAAGAGGAGGAGGTGGTGCCTAGGAAAGCCACA
GTGGTTGAAGTGAAGAGAAATGGAAGTGGAGGTGCATTTCAGCCATTTCA
CAGAGAAAAATGTGGGGAAAAGAAGGACCAACAACAAAGACTGGGAAAAG
TTAATACTCCGGTCCCAACGGCTGCTGCTAGTTCCACAACGGACACTGCG
GTTGGTAAAGGTGAAAAAAATGATAAAGATAAAGATAAAGAGGGCCAGCC
TCAAAGAAAGCAAAGGCGCTCTTGGTCGCCTGAATTGCATAGACGGTTCT
TGCATGCTCTTCAACAACTCGGTGGCTCACATGCTGCTACGCCTAAGCAA
ATTAGGGAGCTAATGAATGTTGATGGGCTTACTAATGATGAAGTCGAGAG
CCATCTACAGAAATATCGTCTGCACACAAGGAGACCAAGTCCGGCAATGC
ACAACGGTGGCAACCCACAAGCGCCCCATTTTGTGGTGGTCGGAGGCATT
GGGGTGCAAGCGCCTGAATATGCAGCAGTTGCTGGCCAAGCCCCAGGGGG
AAGCAAGCTCTAATGGCACCAGCCAACGGAATCTATGGCACCGGTAGCTG
GCACACCGCCTGCAGTACCTCAATCTTCAGCATCAGTAGTGGAAATATCT
CAACAGAACCCATCCCGAGCACTAACATCAAAAAAAAAGGGGGAGGTCCA
AAGGGAGGGTGGGCATCCGGGCTATTTTCCCGGCTAAATTCTCCCTCTAA
CGCAAACAACCCAAACCTTCCCCCTGGGGTTCTAAAATTCCCAAAAAAAA
CAAAAAGGGGGGGAAAAAAATTTTTTGATAAAAAAAAACGTGGGGCTAAA
AAAAAAAAATTTCTTTAATAAACCAAAAGAAAAAAAAATTTTTTTCTTTT
TTTTTCTTGTTTTTT
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