DY262506

Overview
NameDY262506
Unique NameDY262506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1313
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262506_ssr873 microsatellite DY262506_ssr873:873..884. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY262506 vs. ExPASy Swiss-Prot
Match: VATL_MANSE (V-type proton ATPase 16 kDa proteolipid subunit OS=Manduca sexta GN=VHA16 PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 2.511e-75
Identity = 149/156 (95.51%), Postives = 153/156 (98.08%), Query Frame = 1
Query:   52 VAENPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKCIIPVVMAGIIAIYGLVVAVLIAGSLESPA-TYTLFRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTKQ 516
            +AENPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMK IIPVVMAGIIAIYGLVVAVLIAGSL+SP+  YTL+RGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTKQ
Sbjct:    1 MAENPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLDSPSNNYTLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTKQ 156          
BLAST of DY262506 vs. ExPASy Swiss-Prot
Match: VATL_HELVI (V-type proton ATPase 16 kDa proteolipid subunit OS=Heliothis virescens GN=VHA16 PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 1.246e-74
Identity = 147/156 (94.23%), Postives = 153/156 (98.08%), Query Frame = 1
Query:   52 VAENPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKCIIPVVMAGIIAIYGLVVAVLIAGSLESPA-TYTLFRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTKQ 516
            +AENPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMK IIPVVMAGIIAIYGLVVAVLIAGSL++P+  YTL++GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTKQ
Sbjct:    1 MAENPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLDAPSNNYTLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTKQ 156          
BLAST of DY262506 vs. ExPASy Swiss-Prot
Match: VATL_DROME (V-type proton ATPase 16 kDa proteolipid subunit OS=Drosophila melanogaster GN=Vha16 PE=1 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 2.777e-74
Identity = 144/153 (94.12%), Postives = 150/153 (98.04%), Query Frame = 1
Query:   55 AENPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKCIIPVVMAGIIAIYGLVVAVLIAGSLESPATYTLFRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 513
            ++NPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMK IIPVVMAGIIAIYGLVVAVLIAG+LE P+ Y+L+RGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK
Sbjct:    7 SDNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALEEPSKYSLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 159          
BLAST of DY262506 vs. ExPASy Swiss-Prot
Match: VATL_AEDAE (V-type proton ATPase 16 kDa proteolipid subunit OS=Aedes aegypti GN=AAEL000291 PE=2 SV=2)

HSP 1 Score: 277.715 bits (709), Expect = 1.055e-73
Identity = 142/152 (93.42%), Postives = 149/152 (98.03%), Query Frame = 1
Query:   58 ENPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKCIIPVVMAGIIAIYGLVVAVLIAGSLESPATYTLFRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 513
            ENP+YGPFFGVMGAA+AIIFSALGAAYGTAKSGTGIAAMSVMRPELIMK IIPVVMAGIIAIYGLVVAVLIAGSL++P  Y+L++GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK
Sbjct:    6 ENPVYGPFFGVMGAAAAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLDTPTKYSLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 157          
BLAST of DY262506 vs. ExPASy Swiss-Prot
Match: VATL_NEPNO (V-type proton ATPase 16 kDa proteolipid subunit OS=Nephrops norvegicus PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 5.992e-69
Identity = 131/151 (86.75%), Postives = 144/151 (95.36%), Query Frame = 1
Query:   61 NPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKCIIPVVMAGIIAIYGLVVAVLIAGSLESPATYTLFRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 513
            +P+Y PFFGVMGAASA++FSALGAAYGTAKSG GI+AMSVMRPELIMKCIIPVVMAGIIAIYGLVVAVLIAG L+   TYTL++GF+H+GAGL+VG SGLAAGFAIGIVGDAGVRGTAQQPRL+VGMILILIFAEVLGLYGLIVAI+LYTK
Sbjct:    6 SPMYSPFFGVMGAASAMVFSALGAAYGTAKSGVGISAMSVMRPELIMKCIIPVVMAGIIAIYGLVVAVLIAGKLDEAPTYTLYQGFVHMGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLYVGMILILIFAEVLGLYGLIVAIFLYTK 156          
BLAST of DY262506 vs. ExPASy Swiss-Prot
Match: VATL_RAT (V-type proton ATPase 16 kDa proteolipid subunit OS=Rattus norvegicus GN=Atp6v0c PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 1.580e-61
Identity = 127/154 (82.47%), Postives = 136/154 (88.31%), Query Frame = 1
Query:   52 VAENPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKCIIPVVMAGIIAIYGLVVAVLIAGSLESPATYTLFRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 513
            +  NP Y  FFGVMGA+SA++FSA+GAAYGTAKSGTGIAAMSVMRPELIMK IIPVVMAGIIAIYGLVVAVLIA SL      TL+R F+ LGAGL+VG SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA+ L TK
Sbjct:    4 IKNNPEYSSFFGVMGASSAMVFSAMGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIANSLTD--GITLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155          
BLAST of DY262506 vs. ExPASy Swiss-Prot
Match: VATL_MOUSE (V-type proton ATPase 16 kDa proteolipid subunit OS=Mus musculus GN=Atp6v0c PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 1.580e-61
Identity = 127/154 (82.47%), Postives = 136/154 (88.31%), Query Frame = 1
Query:   52 VAENPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKCIIPVVMAGIIAIYGLVVAVLIAGSLESPATYTLFRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 513
            +  NP Y  FFGVMGA+SA++FSA+GAAYGTAKSGTGIAAMSVMRPELIMK IIPVVMAGIIAIYGLVVAVLIA SL      TL+R F+ LGAGL+VG SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA+ L TK
Sbjct:    4 IKNNPEYSSFFGVMGASSAMVFSAMGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIANSLTD--GITLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155          
BLAST of DY262506 vs. ExPASy Swiss-Prot
Match: VATL_TORMA (V-type proton ATPase 16 kDa proteolipid subunit OS=Torpedo marmorata PE=1 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 1.133e-59
Identity = 124/150 (82.67%), Postives = 134/150 (89.33%), Query Frame = 1
Query:   64 PIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKCIIPVVMAGIIAIYGLVVAVLIAGSLESPATYTLFRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 513
            P Y  FFGV+GA++A++FSALGAAYGTAKSGTGIAAMSVMRPELIMK IIPVVMAGIIAIYGLVVAVLIA SL      +LF+ F+ LGAGL+VG SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA+ L TK
Sbjct:    7 PEYSAFFGVIGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIANSLTE--DISLFKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 154          
BLAST of DY262506 vs. ExPASy Swiss-Prot
Match: VATL_SHEEP (V-type proton ATPase 16 kDa proteolipid subunit OS=Ovis aries GN=ATP6V0C PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 3.295e-59
Identity = 123/150 (82.00%), Postives = 133/150 (88.67%), Query Frame = 1
Query:   64 PIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKCIIPVVMAGIIAIYGLVVAVLIAGSLESPATYTLFRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 513
            P Y  FF VMGA++A++FSALGAAYGTAKSGTGIAAMSVMRPE+IMK IIPVVMAGIIAIYGLVVAVLIA SL      +L+R F+ LGAGL+VG SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA+ L TK
Sbjct:    8 PEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGLVVAVLIANSLND--GISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155          
BLAST of DY262506 vs. ExPASy Swiss-Prot
Match: VATL_BOVIN (V-type proton ATPase 16 kDa proteolipid subunit OS=Bos taurus GN=ATP6V0C PE=1 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 3.295e-59
Identity = 123/150 (82.00%), Postives = 133/150 (88.67%), Query Frame = 1
Query:   64 PIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKCIIPVVMAGIIAIYGLVVAVLIAGSLESPATYTLFRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 513
            P Y  FF VMGA++A++FSALGAAYGTAKSGTGIAAMSVMRPE+IMK IIPVVMAGIIAIYGLVVAVLIA SL      +L+R F+ LGAGL+VG SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA+ L TK
Sbjct:    8 PEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGLVVAVLIANSLND--GISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155          
The following BLAST results are available for this feature:
BLAST of DY262506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
VATL_MANSE2.511e-7595.51V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_HELVI1.246e-7494.23V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_DROME2.777e-7494.12V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_AEDAE1.055e-7393.42V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_NEPNO5.992e-6986.75V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_RAT1.580e-6182.47V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_MOUSE1.580e-6182.47V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_TORMA1.133e-5982.67V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_SHEEP3.295e-5982.00V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_BOVIN3.295e-5982.00V-type proton ATPase 16 kDa proteolipid subunit OS... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AF09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262506 ID=DY262506; Name=DY262506; organism=Citrus clementina; type=EST; length=1313bp
TCATCGCAGTTTTTTGGGACCTGTAAATAACCCACTTCAACAGTCAAAAT
GGTTGCCGAAAATCCTATCTATGGACCTTTCTTTGGAGTTATGGGGGCGG
CGTCTGCCATCATATTCAGCGCTTTGGGCGCTGCCTATGGCACGGCCAAG
TCCGGTACCGGTATTGCCGCCATGTCGGTGATGAGGCCTGAGCTGATCAT
GAAGTGTATTATCCCCGTTGTCATGGCGGGTATTATCGCTATCTACGGTC
TGGTCGTGGCTGTACTGATCGCCGGTTCCCTCGAATCCCCCGCCACCTAC
ACCCTCTTCAGAGGATTCATCCATCTTGGTGCCGGTCTGGCCGTCGGTTT
CTCTGGTCTGGCAGCTGGTTTCGCCATAGGCATCGTTGGTGATGCTGGTG
TCCGCGGCACAGCGCAACAGCCCAGATTATTCGTCGGAATGATCCTTATC
CTCATTTTCGCCGAAGTATTGGGTCTTTACGGTCTCATCGTCGCCATCTA
CCTTTACACGAAACAGTAAATGCAATCTGCAGCGCACACTCTTCTCCCGT
CGCCCATGCCCTGGGGGTCTCGCCACCTTCGGACCCGCTCTTTGTGCGCA
ACAGGGACACGTCGTCGCCGGTAGCGACTGCATAATACCTTCGACCAGAA
CTCCAGGGCATAAGAAACTTGTTTGTAATGTTGTTGAGTACTTGAACATG
AGTAATTTATATTTTGTCGCATAGCTCCGGCTCGGCGCCGCCTCGATGCT
GCGGCAGCGCCCCGCCTTGAGCCTCGACTCGTATAAATATTTTTTCTATT
TACATTTTACAATGATTAACTGTGTTTCATGAATCATGTCGATCTATCGC
TACCGGGCGACGACACCATTTAATTATTATTATTGATTTTATTTATTATT
TATCGCTGCTGATTTTTAATATTTTTTGGGGGACAAGGAGGATTTTGTTT
TACCATCAACATATCAAAATTTTAATTTGCGCGTCTTCATCCCTCGCGAA
CGATAAATCTGTAAAACATCTGACGATCACACAATTCACTTTAGATTATT
TTTAGCCGTAAGGGAAAACTAATGGACAGTTAAATTAAAAAATTAATTCC
CAACAAAGGGTATTCTTAAAATAATTTATGAATCCGTTAACCCCCCGGAA
CGGGGGTACCCCCAATCCCGGGTTGGCCAAAAGTTAAGGGGTAAAACCCG
GGGCTTTTGTTTTCCCCTGGGAAGGGGGGCTTTCCGGGGGGTTATAAAGG
GGGGGGGGGAGCGTATCTCCACCCCCCCTCTCCTCTCTTATCCTCGTTTG
CTTTGGGGGTCTG
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