DY262516

Overview
NameDY262516
Unique NameDY262516
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1313
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2322 contig Ccv1_Contig2322:1..1313. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: RH1_ARATH (DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis thaliana GN=RH1 PE=2 SV=2)

HSP 1 Score: 338.191 bits (866), Expect = 2.251e-99
Identity = 178/255 (69.80%), Postives = 206/255 (80.78%), Query Frame = 2
Query:  377 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNETAF-LMQYFSGFSIWLFKTIRKMWC*KGL*GQT*PKLGKKGLPAPLTQESKNPVQLEFASPLYSGTLG 1138
            +NMGISSLFPVQVAVW ETIGPG FERD+C+NSPTGSGKTLSYALPIVQ L++R VRCLRALVVLPTRDLALQVKDVF AIAPAVGLSVG AVGQSSIA EIS+LIK PKL+AGICYDP+D+ Q L+SAVDILVATPGRLMDHIN T+GFTLEHL YLVVDETDRLLREAYQ+WLPTVLQLT++ +++ F     F   +    +T+R+    +G  G+  P+L K  L A LTQ+    +QL+   PL+  T G
Sbjct:   37 ENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVFDAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSFTPFVPSAFGSLQTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMTTGG 291          

HSP 2 Score: 47.3654 bits (111), Expect = 2.251e-99
Identity = 19/28 (67.86%), Postives = 24/28 (85.71%), Query Frame = 3
Query:  297 VLPWMRSPVDVSLFEDCPLDHLPCLDPR 380
            V+PWMR+PVDVS  E+C LD LPCL+P+
Sbjct:    4 VVPWMRAPVDVSNVENCALDTLPCLNPK 31          
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: RH1_ORYSJ (DEAD-box ATP-dependent RNA helicase 1 OS=Oryza sativa subsp. japonica GN=Os02g0795900 PE=2 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.347e-87
Identity = 163/263 (61.98%), Postives = 189/263 (71.86%), Query Frame = 2
Query:  377 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNETAFLMQYFSGFSIWLFKTIRKMWC*KGL*GQT*PKLGKKGLPAPLTQESKNPVQLEFASPLYSGTLGKNPLKPPTK 1165
            Q MGI S FPVQVA W ETIGPG FERD+CINSPTGSGKTL+YALPIVQ L+ R VRCLRALVVLPTRDLALQVK+VF AIAP VGLSVG AVGQSSIADE+S LI++ K       D E +  E Q+ VDILVATPGRLMDHI+ T+GF+LEHL YLVVDETDR+LREAYQ+WLPTV+QLTRS ++            +    TIR+    +G  G++ P+L K  L A LTQ+     QLE   PL   + GK   + PTK
Sbjct:   53 QRMGIESFFPVQVAAWLETIGPGAFERDICINSPTGSGKTLAYALPIVQMLATRKVRCLRALVVLPTRDLALQVKEVFDAIAPVVGLSVGSAVGQSSIADEVSNLIEKSKQGLFPSLDEEYIQMEPQTKVDILVATPGRLMDHISMTKGFSLEHLQYLVVDETDRMLREAYQSWLPTVIQLTRSSDQNHSWSDMNGETLLHPLTTIRRSGVERGFKGKSFPRLAKIVLSATLTQDPSKLSQLELQHPLLLNS-GKKRYRIPTK 314          

HSP 2 Score: 50.0618 bits (118), Expect = 1.347e-87
Identity = 21/37 (56.76%), Postives = 24/37 (64.86%), Query Frame = 3
Query:  270 EEAKKKSVPVLPWMRSPVDVSLFEDCPLDHLPCLDPR 380
            E      VP LPWMR+PVD+  F  CP+ HLP LDPR
Sbjct:   11 EGGPSSRVPHLPWMRNPVDIDSFSGCPVAHLPRLDPR 47          
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: DDX51_DANRE (ATP-dependent RNA helicase DDX51 OS=Danio rerio GN=ddx51 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.591e-37
Identity = 99/269 (36.80%), Postives = 144/269 (53.53%), Query Frame = 2
Query:  377 QNMGISSLFPVQVAVWQ---ETIGPGLF-------ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNETAFLMQYFSGFSIWLFKTIRKMWC*KGL*GQT*PKLGKKGLPAPLTQESKNPVQLEFASPLYSGTLGKNPLK 1153
            Q  GI S FPVQ  V     E++G GL         RD+C+++PTGSGKTL++ +P+VQ LS R VR +RAL VLPT++LA QV +VF+A      L V +  GQ S A E + L    ++  G+ +          S  DI+VATPGRL+DHIN    F+L+HL +L++DE DR++   +Q+WL    Q+T++   T                            G+T   + ++ +P P+T  S +P Q+     L+S TL +NP K
Sbjct:  205 QTNGIQSFFPVQAEVIPAILESVGSGLLVGPGGYRPRDVCVSAPTGSGKTLAFVIPVVQALSKRVVRQVRALAVLPTKELAQQVSNVFSAYTEGSSLKVVMITGQKSFAAEQTAL---SEIRGGVSH----------SMADIVVATPGRLVDHINKNSSFSLQHLRFLIIDEADRMIDSMHQSWLS---QVTKAVYSTP---------------------------GETHTSVFRRTVPGPITAASLSPPQIPLQKLLFSATLTQNPEK 430          
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: DDX51_HUMAN (ATP-dependent RNA helicase DDX51 OS=Homo sapiens GN=DDX51 PE=1 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 2.013e-32
Identity = 80/186 (43.01%), Postives = 111/186 (59.68%), Query Frame = 2
Query:  386 GISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 913
            GISS FPVQ AV             +G G +   DLC+++PTGSGKTL++ +P+VQ L +R V  +RALVVLPT++LA QV  VF     A  L V L  GQ S+A E   L+++                  +   DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++   +Q+WLP V+
Sbjct:  217 GISSYFPVQAAVIPALLESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLSRVVCHIRALVVLPTKELAQQVSKVFNIYTDATPLRVSLVTGQKSLAKEQESLVQK-------------TADGYRCLADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVV 389          
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: DDX51_MOUSE (ATP-dependent RNA helicase DDX51 OS=Mus musculus GN=Ddx51 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 4.485e-32
Identity = 79/186 (42.47%), Postives = 111/186 (59.68%), Query Frame = 2
Query:  386 GISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 913
            GI+S FPVQ AV             IG G ++  DLC+++PTGSGKTL++ +P+VQ L +R V  +RALVVLPT++LA QV  VF        L V L  GQ S+A E   L+++                  +   DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++   +Q+WLP V+
Sbjct:  189 GITSYFPVQAAVIPALLESADHGFLIGRGGYQPSDLCVSAPTGSGKTLAFVIPVVQALLHRVVCHIRALVVLPTKELAQQVSKVFNIYTDTTPLRVALVTGQKSLAKEQESLVQK-------------TADGFRCLADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVV 361          
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: DDX51_DICDI (Probable ATP-dependent RNA helicase ddx51 OS=Dictyostelium discoideum GN=ddx51 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 8.458e-31
Identity = 86/212 (40.57%), Postives = 120/212 (56.60%), Query Frame = 2
Query:  377 QNMGISSLFPVQ---VAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR-----SDNETAFLMQYFSGFSIWLFK 988
            +   I +LFPVQ   V     T G      D+C+ +PTGSGKTL+YA+P+VQ +  R VR +R  V++PT DL +QV+  F +I     L V L++G      E   LIK         Y+         S VDI+V+TPGR++DHIN T GFTL++L YLV+DE DRLLR+++Q WL  V+  T      +  +   L++Y S   I LF+
Sbjct:   31 KEQSIINLFPVQQEIVPFINRTEG-----HDICVCAPTGSGKTLAYAIPLVQKIVKRVVRRVRVAVIVPTHDLVIQVEKTFQSIIKGTDLVV-LSLGVKPFHIEQKLLIKNHSYGEHALYE---------SLVDIIVSTPGRIVDHINETLGFTLKYLNYLVIDEADRLLRQSFQDWLEIVIDSTNQHSDLNQQQEEQLIKYNSKGDIELFE 227          
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: DDX51_DROME (Probable ATP-dependent RNA helicase Dbp73D OS=Drosophila melanogaster GN=Dbp73D PE=2 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 2.303e-28
Identity = 76/180 (42.22%), Postives = 105/180 (58.33%), Query Frame = 2
Query:  377 QNMGISSLFPVQVAV--W---QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 901
            + M I  LFPVQ  V  W        P    RD+C+++PTGSGKTL++A+PIVQ LS R    +RALVVLP  +LALQV  V + +     L V L   Q  + DE  +L+++ K              +  S  DI+V TPGRL+DH++AT+GF L+ L +LV+DE DR++   +Q WL
Sbjct:  153 KQMKIKRLFPVQKQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVDCKVRALVVLPVAELALQVYRVISELCSKTELEVCLLSKQHKLEDEQEKLVEQYK-------------GKYYSKADIVVTTPGRLVDHLHATKGFCLKSLKFLVIDEADRIMDAVFQNWL 319          
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: DBP6_SCHPO (ATP-dependent RNA helicase dbp6 OS=Schizosaccharomyces pombe GN=dbp6 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 5.131e-28
Identity = 73/185 (39.46%), Postives = 103/185 (55.68%), Query Frame = 2
Query:  377 QNMGISSLFPVQVAVWQETIGPGL------FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 913
            Q   I+  F VQ AV    +  G       +  D+C+++ TGSGKTLSY +PIVQ LS+R V  LR +V++PTR+L +QV   F       GL V    GQ S+  E  +L                   E +  +D+LV+TPGRL+DHI     F+L+HL Y+V+DE DRLL +++Q W+ TV+
Sbjct:  142 QKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKSLRHETYQLNG----------------DENECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVM 310          
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: DBP6_ASPNC (ATP-dependent RNA helicase dbp6 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp6 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.493e-27
Identity = 77/204 (37.75%), Postives = 108/204 (52.94%), Query Frame = 2
Query:  377 QNMGISSLFPVQVAVWQETI-GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV---LQLTRSDNETAFLMQYFSGFSI 976
            ++ G    F VQ  V    + GP     DLCI++ TGSGKTLSY LP+V  L       LR L+V+PTR+L  Q ++     A   GL V  AVG  +I DE  E +                +   +  VDIL+ TPGRL+DH+  T+GFTL++L +LV+DE DRLL E++Q W+  V   L   ++ +   F   + SG  +
Sbjct:  137 EDNGYREAFAVQSTVIPLLLQGPTNHPGDLCISAATGSGKTLSYVLPLVTALKPLPAPRLRGLIVVPTRELVKQAREACELCAAGSGLRVASAVGNVAIKDEQRESL-------------PGYVHRSEPNVDILICTPGRLVDHLRYTKGFTLKNLEWLVIDEADRLLNESFQEWVDVVMTSLDARKAPDAFGFSGNFLSGLGL 327          
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: DBP6_PICGU (ATP-dependent RNA helicase DBP6 OS=Pichia guilliermondii GN=DBP6 PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 4.495e-24
Identity = 75/188 (39.89%), Postives = 105/188 (55.85%), Query Frame = 2
Query:  377 QNMGISSLFPVQVAVWQ--------ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVL 913
            Q+ G SS F VQV+V +        + I P +   DL +N+ TGSGKTL YA+PI+++L NR V  +RA+V++PT+ L  QVK  FA ++    LSV       SI DE                      Q LQ   DI+V+TPGRL++H+  T G   L+ L YLV+DE DRLL +++Q W  T++
Sbjct:  207 QSNGFSSAFSVQVSVLKLLLPDMESQAIRPDI-GGDLLVNAATGSGKTLGYAIPIIESLRNRIVPRVRAIVLVPTKPLISQVKATFAMLSKNTNLSVVSLRSDISINDE---------------------AQRLQVVPDIIVSTPGRLVEHL--TNGHINLKSLRYLVIDEADRLLNQSFQNWCETLM 370          
The following BLAST results are available for this feature:
BLAST of DY262516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 338
Match NameE-valueIdentityDescription
RH1_ARATH2.251e-9969.80DEAD-box ATP-dependent RNA helicase 1 OS=Arabidops... [more]
RH1_ORYSJ1.347e-8761.98DEAD-box ATP-dependent RNA helicase 1 OS=Oryza sat... [more]
DDX51_DANRE1.591e-3736.80ATP-dependent RNA helicase DDX51 OS=Danio rerio GN... [more]
DDX51_HUMAN2.013e-3243.01ATP-dependent RNA helicase DDX51 OS=Homo sapiens G... [more]
DDX51_MOUSE4.485e-3242.47ATP-dependent RNA helicase DDX51 OS=Mus musculus G... [more]
DDX51_DICDI8.458e-3140.57Probable ATP-dependent RNA helicase ddx51 OS=Dicty... [more]
DDX51_DROME2.303e-2842.22Probable ATP-dependent RNA helicase Dbp73D OS=Dros... [more]
DBP6_SCHPO5.131e-2839.46ATP-dependent RNA helicase dbp6 OS=Schizosaccharom... [more]
DBP6_ASPNC1.493e-2737.75ATP-dependent RNA helicase dbp6 OS=Aspergillus nig... [more]
DBP6_PICGU4.495e-2439.89ATP-dependent RNA helicase DBP6 OS=Pichia guillier... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AG08RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262516 ID=DY262516; Name=DY262516; organism=Citrus clementina; type=EST; length=1313bp
CGAGTAGTCAGCCACCGCTCATCATCTTCTCTTAGCATCATCGTCATCAG
CCTGTTACGGACTCCTGTTCAGCGCCATCTCCTCTCACGGCAGCTCACAA
CACGCTGCAGCCTGCAGTCCGTCAAGCTTCCGTCAGCGCCATCTCTCACG
GAAACTCACAACACGCTGCAGCCTGCAATCCGTCAAGCTTCTCACGCCAT
CGCCGTCACTAGTATTGCCGAACTGCTGTCAAGGACTCAAGGGTTTAGAT
TTGTCGGAGAAGAATAATGGAGGAAGCAAAGAAGAAGAGCGTGCCAGTCT
TGCCGTGGATGCGAAGCCCGGTTGATGTCAGTCTCTTTGAAGACTGTCCT
CTTGATCACCTCCCTTGTCTTGACCCCAGAACATGGGTATCTCGTCACTC
TTCCCAGTGCAAGTTGCAGTTTGGCAAGAGACAATAGGCCCTGGTCTATT
TGAACGAGACCTTTGCATCAATTCACCTACAGGAAGTGGGAAAACTTTGT
CTTATGCTTTGCCAATAGTTCAAACATTGTCCAATCGTGCTGTTAGATGT
CTACGTGCTTTGGTGGTGCTGCCCACGCGTGATCTAGCTTTGCAGGTCAA
GGATGTTTTCGCTGCGATTGCACCTGCAGTGGGTTTGTCTGTTGGTTTGG
CTGTGGGTCAATCTTCTATTGCTGATGAAATTTCGGAGCTTATTAAGAGA
CCTAAGCTCGAGGCAGGAATCTGTTATGACCCTGAAGATGTTTTGCAAGA
GTTACAGAGTGCAGTAGATATATTGGTGGCAACTCCAGGAAGGCTAATGG
ACCATATCAATGCTACTAGGGGATTTACCCTCGAGCATCTCTGTTACCTT
GTTGTTGACGAAACTGATCGATTGCTTAGGGAGGCATATCAAGCTTGGCT
GCCCACTGTGCTCCAATTAACTCGATCTGATAATGAAACCGCTTTTCTGA
TGCAGTACTTTTCTGGTTTCAGCATTTGGCTCTTTAAAACCATAAGAAAG
ATGTGGTGTTGAAAGGGGCTTTAAGGACAAACTTAACCTAAGCTTGGGAA
GAAGGGTTTACCGGCCCCGTTAACCCAAGAATCAAAAAACCCCGTCCAAC
TTGAATTTGCATCACCCCTTTATTCCGGAACCCTGGGGAAAAACCCTTTA
AAACCCCCCACAAAAAAATGGGAACCCAACAAAAAAGAAATTTGGGGATC
CAAAAACACGAAACCCCTTTTTTATTTTTGGTTGGGACCTTCTCTTCTAA
AAAATAATATGAAAAGGAAAAAGAAAAAGAAATGTGGTTGCTTTTCTCCC
CCACCATCCCCCC
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