DY262516
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: RH1_ARATH (DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis thaliana GN=RH1 PE=2 SV=2) HSP 1 Score: 338.191 bits (866), Expect = 2.251e-99 Identity = 178/255 (69.80%), Postives = 206/255 (80.78%), Query Frame = 2 Query: 377 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNETAF-LMQYFSGFSIWLFKTIRKMWC*KGL*GQT*PKLGKKGLPAPLTQESKNPVQLEFASPLYSGTLG 1138 +NMGISSLFPVQVAVW ETIGPG FERD+C+NSPTGSGKTLSYALPIVQ L++R VRCLRALVVLPTRDLALQVKDVF AIAPAVGLSVG AVGQSSIA EIS+LIK PKL+AGICYDP+D+ Q L+SAVDILVATPGRLMDHIN T+GFTLEHL YLVVDETDRLLREAYQ+WLPTVLQLT++ +++ F F + +T+R+ +G G+ P+L K L A LTQ+ +QL+ PL+ T G Sbjct: 37 ENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVFDAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSFTPFVPSAFGSLQTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMTTGG 291 HSP 2 Score: 47.3654 bits (111), Expect = 2.251e-99 Identity = 19/28 (67.86%), Postives = 24/28 (85.71%), Query Frame = 3 Query: 297 VLPWMRSPVDVSLFEDCPLDHLPCLDPR 380 V+PWMR+PVDVS E+C LD LPCL+P+ Sbjct: 4 VVPWMRAPVDVSNVENCALDTLPCLNPK 31
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: RH1_ORYSJ (DEAD-box ATP-dependent RNA helicase 1 OS=Oryza sativa subsp. japonica GN=Os02g0795900 PE=2 SV=1) HSP 1 Score: 296.204 bits (757), Expect = 1.347e-87 Identity = 163/263 (61.98%), Postives = 189/263 (71.86%), Query Frame = 2 Query: 377 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNETAFLMQYFSGFSIWLFKTIRKMWC*KGL*GQT*PKLGKKGLPAPLTQESKNPVQLEFASPLYSGTLGKNPLKPPTK 1165 Q MGI S FPVQVA W ETIGPG FERD+CINSPTGSGKTL+YALPIVQ L+ R VRCLRALVVLPTRDLALQVK+VF AIAP VGLSVG AVGQSSIADE+S LI++ K D E + E Q+ VDILVATPGRLMDHI+ T+GF+LEHL YLVVDETDR+LREAYQ+WLPTV+QLTRS ++ + TIR+ +G G++ P+L K L A LTQ+ QLE PL + GK + PTK Sbjct: 53 QRMGIESFFPVQVAAWLETIGPGAFERDICINSPTGSGKTLAYALPIVQMLATRKVRCLRALVVLPTRDLALQVKEVFDAIAPVVGLSVGSAVGQSSIADEVSNLIEKSKQGLFPSLDEEYIQMEPQTKVDILVATPGRLMDHISMTKGFSLEHLQYLVVDETDRMLREAYQSWLPTVIQLTRSSDQNHSWSDMNGETLLHPLTTIRRSGVERGFKGKSFPRLAKIVLSATLTQDPSKLSQLELQHPLLLNS-GKKRYRIPTK 314 HSP 2 Score: 50.0618 bits (118), Expect = 1.347e-87 Identity = 21/37 (56.76%), Postives = 24/37 (64.86%), Query Frame = 3 Query: 270 EEAKKKSVPVLPWMRSPVDVSLFEDCPLDHLPCLDPR 380 E VP LPWMR+PVD+ F CP+ HLP LDPR Sbjct: 11 EGGPSSRVPHLPWMRNPVDIDSFSGCPVAHLPRLDPR 47
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: DDX51_DANRE (ATP-dependent RNA helicase DDX51 OS=Danio rerio GN=ddx51 PE=2 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 1.591e-37 Identity = 99/269 (36.80%), Postives = 144/269 (53.53%), Query Frame = 2 Query: 377 QNMGISSLFPVQVAVWQ---ETIGPGLF-------ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNETAFLMQYFSGFSIWLFKTIRKMWC*KGL*GQT*PKLGKKGLPAPLTQESKNPVQLEFASPLYSGTLGKNPLK 1153 Q GI S FPVQ V E++G GL RD+C+++PTGSGKTL++ +P+VQ LS R VR +RAL VLPT++LA QV +VF+A L V + GQ S A E + L ++ G+ + S DI+VATPGRL+DHIN F+L+HL +L++DE DR++ +Q+WL Q+T++ T G+T + ++ +P P+T S +P Q+ L+S TL +NP K Sbjct: 205 QTNGIQSFFPVQAEVIPAILESVGSGLLVGPGGYRPRDVCVSAPTGSGKTLAFVIPVVQALSKRVVRQVRALAVLPTKELAQQVSNVFSAYTEGSSLKVVMITGQKSFAAEQTAL---SEIRGGVSH----------SMADIVVATPGRLVDHINKNSSFSLQHLRFLIIDEADRMIDSMHQSWLS---QVTKAVYSTP---------------------------GETHTSVFRRTVPGPITAASLSPPQIPLQKLLFSATLTQNPEK 430
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: DDX51_HUMAN (ATP-dependent RNA helicase DDX51 OS=Homo sapiens GN=DDX51 PE=1 SV=3) HSP 1 Score: 140.584 bits (353), Expect = 2.013e-32 Identity = 80/186 (43.01%), Postives = 111/186 (59.68%), Query Frame = 2 Query: 386 GISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 913 GISS FPVQ AV +G G + DLC+++PTGSGKTL++ +P+VQ L +R V +RALVVLPT++LA QV VF A L V L GQ S+A E L+++ + DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+WLP V+ Sbjct: 217 GISSYFPVQAAVIPALLESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLSRVVCHIRALVVLPTKELAQQVSKVFNIYTDATPLRVSLVTGQKSLAKEQESLVQK-------------TADGYRCLADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVV 389
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: DDX51_MOUSE (ATP-dependent RNA helicase DDX51 OS=Mus musculus GN=Ddx51 PE=2 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 4.485e-32 Identity = 79/186 (42.47%), Postives = 111/186 (59.68%), Query Frame = 2 Query: 386 GISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 913 GI+S FPVQ AV IG G ++ DLC+++PTGSGKTL++ +P+VQ L +R V +RALVVLPT++LA QV VF L V L GQ S+A E L+++ + DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+WLP V+ Sbjct: 189 GITSYFPVQAAVIPALLESADHGFLIGRGGYQPSDLCVSAPTGSGKTLAFVIPVVQALLHRVVCHIRALVVLPTKELAQQVSKVFNIYTDTTPLRVALVTGQKSLAKEQESLVQK-------------TADGFRCLADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVV 361
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: DDX51_DICDI (Probable ATP-dependent RNA helicase ddx51 OS=Dictyostelium discoideum GN=ddx51 PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 8.458e-31 Identity = 86/212 (40.57%), Postives = 120/212 (56.60%), Query Frame = 2 Query: 377 QNMGISSLFPVQ---VAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR-----SDNETAFLMQYFSGFSIWLFK 988 + I +LFPVQ V T G D+C+ +PTGSGKTL+YA+P+VQ + R VR +R V++PT DL +QV+ F +I L V L++G E LIK Y+ S VDI+V+TPGR++DHIN T GFTL++L YLV+DE DRLLR+++Q WL V+ T + + L++Y S I LF+ Sbjct: 31 KEQSIINLFPVQQEIVPFINRTEG-----HDICVCAPTGSGKTLAYAIPLVQKIVKRVVRRVRVAVIVPTHDLVIQVEKTFQSIIKGTDLVV-LSLGVKPFHIEQKLLIKNHSYGEHALYE---------SLVDIIVSTPGRIVDHINETLGFTLKYLNYLVIDEADRLLRQSFQDWLEIVIDSTNQHSDLNQQQEEQLIKYNSKGDIELFE 227
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: DDX51_DROME (Probable ATP-dependent RNA helicase Dbp73D OS=Drosophila melanogaster GN=Dbp73D PE=2 SV=3) HSP 1 Score: 127.102 bits (318), Expect = 2.303e-28 Identity = 76/180 (42.22%), Postives = 105/180 (58.33%), Query Frame = 2 Query: 377 QNMGISSLFPVQVAV--W---QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 901 + M I LFPVQ V W P RD+C+++PTGSGKTL++A+PIVQ LS R +RALVVLP +LALQV V + + L V L Q + DE +L+++ K + S DI+V TPGRL+DH++AT+GF L+ L +LV+DE DR++ +Q WL Sbjct: 153 KQMKIKRLFPVQKQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVDCKVRALVVLPVAELALQVYRVISELCSKTELEVCLLSKQHKLEDEQEKLVEQYK-------------GKYYSKADIVVTTPGRLVDHLHATKGFCLKSLKFLVIDEADRIMDAVFQNWL 319
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: DBP6_SCHPO (ATP-dependent RNA helicase dbp6 OS=Schizosaccharomyces pombe GN=dbp6 PE=2 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 5.131e-28 Identity = 73/185 (39.46%), Postives = 103/185 (55.68%), Query Frame = 2 Query: 377 QNMGISSLFPVQVAVWQETIGPGL------FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 913 Q I+ F VQ AV + G + D+C+++ TGSGKTLSY +PIVQ LS+R V LR +V++PTR+L +QV F GL V GQ S+ E +L E + +D+LV+TPGRL+DHI F+L+HL Y+V+DE DRLL +++Q W+ TV+ Sbjct: 142 QKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKSLRHETYQLNG----------------DENECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVM 310
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: DBP6_ASPNC (ATP-dependent RNA helicase dbp6 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp6 PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 1.493e-27 Identity = 77/204 (37.75%), Postives = 108/204 (52.94%), Query Frame = 2 Query: 377 QNMGISSLFPVQVAVWQETI-GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV---LQLTRSDNETAFLMQYFSGFSI 976 ++ G F VQ V + GP DLCI++ TGSGKTLSY LP+V L LR L+V+PTR+L Q ++ A GL V AVG +I DE E + + + VDIL+ TPGRL+DH+ T+GFTL++L +LV+DE DRLL E++Q W+ V L ++ + F + SG + Sbjct: 137 EDNGYREAFAVQSTVIPLLLQGPTNHPGDLCISAATGSGKTLSYVLPLVTALKPLPAPRLRGLIVVPTRELVKQAREACELCAAGSGLRVASAVGNVAIKDEQRESL-------------PGYVHRSEPNVDILICTPGRLVDHLRYTKGFTLKNLEWLVIDEADRLLNESFQEWVDVVMTSLDARKAPDAFGFSGNFLSGLGL 327
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: DBP6_PICGU (ATP-dependent RNA helicase DBP6 OS=Pichia guilliermondii GN=DBP6 PE=3 SV=2) HSP 1 Score: 112.849 bits (281), Expect = 4.495e-24 Identity = 75/188 (39.89%), Postives = 105/188 (55.85%), Query Frame = 2 Query: 377 QNMGISSLFPVQVAVWQ--------ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVL 913 Q+ G SS F VQV+V + + I P + DL +N+ TGSGKTL YA+PI+++L NR V +RA+V++PT+ L QVK FA ++ LSV SI DE Q LQ DI+V+TPGRL++H+ T G L+ L YLV+DE DRLL +++Q W T++ Sbjct: 207 QSNGFSSAFSVQVSVLKLLLPDMESQAIRPDI-GGDLLVNAATGSGKTLGYAIPIIESLRNRIVPRVRAIVLVPTKPLISQVKATFAMLSKNTNLSVVSLRSDISINDE---------------------AQRLQVVPDIIVSTPGRLVEHL--TNGHINLKSLRYLVIDEADRLLNQSFQNWCETLM 370 The following BLAST results are available for this feature:
BLAST of DY262516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 338
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Sequences
The
following sequences are available for this feature:
EST sequence >DY262516 ID=DY262516; Name=DY262516; organism=Citrus clementina; type=EST; length=1313bpback to top |