DY262540

Overview
NameDY262540
Unique NameDY262540
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1200
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262540_ssr34 microsatellite DY262540_ssr34:34..49. BLAST: Citrus ESTs to Prunus persica proteins V1
DY262540_ssr84 microsatellite DY262540_ssr84:84..95. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2323 contig Ccv1_Contig2323:1..1200. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY262540 vs. ExPASy Swiss-Prot
Match: CLAP1_XENLA (CLIP-associating protein 1 OS=Xenopus laevis GN=clasp1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.740e-19
Identity = 66/227 (29.07%), Postives = 115/227 (50.66%), Query Frame = 1
Query:  280 EAKMEEALELARAKDTKERMAGVERLHQLLEASRKSLTGAEVTSLVDCCLDLL-----KDNNFKXXXXXXXXXXXXXXXXXEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLME-VSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTHAGTQFRDELHRHNLPNSMVKDINARLERI 942
            E  M+  L   + KD  +R+     L + L   +KS+   +  +L+D  +D L       +N+K                 + F+     ++P++++RLGDAK  VR+  + LL+ +ME  S+P  + ER  S  + H+++R RE     + + + ++ A  LTL + I+P I  +L DPN  VR+AAI C+ E+Y H G + R +L +  LP S +  I  + + +
Sbjct:    2 EQGMDYWLGQIQQKDVGKRLQVGPDLIEYLLDRQKSIDLEQDQTLLDRMVDGLATSWVNSSNYKVALLGMDILSELVSRLQDRFRTQLGTVLPSLMDRLGDAKDSVREQDQSLLIKIMEQASNPQYVWERMFS-GFKHKNFRTREGVCLCLIATLNVYGANSLTLSK-IVPHICNLLGDPNSQVRDAAINCLVEIYRHVGERVRADLSKKGLPQSRLNVIFTKFDEV 226          
BLAST of DY262540 vs. ExPASy Swiss-Prot
Match: CLASP_DROME (CLIP-associating protein OS=Drosophila melanogaster GN=chb PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.968e-19
Identity = 65/237 (27.43%), Postives = 120/237 (50.63%), Query Frame = 1
Query:  274 RSEAKMEEALELARAKDTKERMAGVERLHQLLEASRKSLTGAEVTSLVDCCLDLLKDNNFKXXXXXXXXXXXXXXXXXEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLME--VSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTHAGTQFRDELHR-HNLPNSMVKDINARLERIHPQIRSSDGLL 975
            R  + ++  ++     D + ++   E L   L     S+   ++  L+D  +  L  ++FK                   F  +   ++P V++RLGD++  VR+ A+ LL  LME  V  P  ++++  +  + H++ +VREEF +T+ +A+  +   +L++ R  +PP+  +L DP   VREAAI  + E+Y H G + R +L R  ++P S +    A LE+   Q++  +GLL
Sbjct:    4 RKPSDLDGFIQQMPKADMRVKVQLAEDLVTFLSDDTNSIVCTDMGFLIDGLMPWLTGSHFKIAQKSLEAFSELIKRLGSDFNAYTATVLPHVIDRLGDSRDTVREKAQLLLRDLMEHRVLPPQALIDKLATSCFKHKNAKVREEFLQTIVNALHEYGTQQLSV-RVYIPPVCALLGDPTVNVREAAIQTLVEIYKHVGDRLRPDLRRMDDVPASKL----AMLEQKFDQVK-QEGLL 234          
BLAST of DY262540 vs. ExPASy Swiss-Prot
Match: CLAP1_MOUSE (CLIP-associating protein 1 OS=Mus musculus GN=Clasp1 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.629e-17
Identity = 63/227 (27.75%), Postives = 108/227 (47.58%), Query Frame = 1
Query:  280 EAKMEEALELARAKDTKERMAGVERLHQLLEASRKSLTGAEVTSLVDCCLDLL-----KDNNFKXXXXXXXXXXXXXXXXXEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLME-VSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTHAGTQFRDELHRHNLPNSMVKDINARLERI 942
            E +ME  L     KD  +R+   + L       +KS       +L+D  +D L       +N+K                 + FK     ++P++++RLGDAK  VR+  + LLL +M+  ++P  + +R     + H+++R RE     + + +    A  LTL + I+P I  +L DPN  VR+AAI  + E+Y H G + R +L +  LP S +  I  + + +
Sbjct:    2 EPRMESCLAQVLQKDVGKRLQVGQELIDYFSDRQKSADLEHDQTLLDKLVDGLATSWVNSSNYKVVLLGMDILSALVTRLQDRFKAQIGTVLPSLIDRLGDAKDSVREQDQTLLLKIMDQAANPQYVWDRMLG-GFKHKNFRTREGICLCLIATLNASGAQTLTLSK-IVPHICNLLGDPNSQVRDAAINSLVEIYRHVGERVRADLSKKGLPQSRLNVIFTKFDEV 226          
BLAST of DY262540 vs. ExPASy Swiss-Prot
Match: CLAP1_HUMAN (CLIP-associating protein 1 OS=Homo sapiens GN=CLASP1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.127e-17
Identity = 62/227 (27.31%), Postives = 108/227 (47.58%), Query Frame = 1
Query:  280 EAKMEEALELARAKDTKERMAGVERLHQLLEASRKSLTGAEVTSLVDCCLDLL-----KDNNFKXXXXXXXXXXXXXXXXXEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLME-VSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTHAGTQFRDELHRHNLPNSMVKDINARLERI 942
            E +ME  L     KD  +R+   + L       +KS       +++D  +D L       +N+K                 + FK     ++P++++RLGDAK  VR+  + LLL +M+  ++P  + +R     + H+++R RE     + + +    A  LTL + I+P I  +L DPN  VR+AAI  + E+Y H G + R +L +  LP S +  I  + + +
Sbjct:    2 EPRMESCLAQVLQKDVGKRLQVGQELIDYFSDKQKSADLEHDQTMLDKLVDGLATSWVNSSNYKVVLLGMDILSALVTRLQDRFKAQIGTVLPSLIDRLGDAKDSVREQDQTLLLKIMDQAANPQYVWDRMLG-GFKHKNFRTREGICLCLIATLNASGAQTLTLSK-IVPHICNLLGDPNSQVRDAAINSLVEIYRHVGERVRADLSKKGLPQSRLNVIFTKFDEV 226          
The following BLAST results are available for this feature:
BLAST of DY262540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CLAP1_XENLA1.740e-1929.07CLIP-associating protein 1 OS=Xenopus laevis GN=cl... [more]
CLASP_DROME2.968e-1927.43CLIP-associating protein OS=Drosophila melanogaste... [more]
CLAP1_MOUSE1.629e-1727.75CLIP-associating protein 1 OS=Mus musculus GN=Clas... [more]
CLAP1_HUMAN2.127e-1727.31CLIP-associating protein 1 OS=Homo sapiens GN=CLAS... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA100BA11RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262540 ID=DY262540; Name=DY262540; organism=Citrus clementina; type=EST; length=1200bp
CTCCTCCGTCAATTCTAGTCACCACCACCTTTACTCTCTCTCTCTCTCTA
GTTCTCTAAATTAAGCGGCACTTCTCCGCTAATTCTCTCTCTCTCTTAGT
TTCAACATTTCCCTCTCACTCTCACTTCACCACCTACAAAATTCGATTTA
ATTTCACTTAATTAATAAAATCTCCGTATAAATTAGCGTCAATTGGACAA
GCACATTTCTCACTCTCTGTTTTGCGGTGTGAATTTGGTTCCGTAATTGG
TTAGATCTGAGGCGCGTGGCTCCAGATCCGAGGCTAAAATGGAGGAGGCG
CTGGAACTGGCACGCGCGAAGGACACTAAAGAGCGGATGGCCGGAGTGGA
GCGTCTCCACCAACTTCTAGAAGCTTCTAGAAAGAGTCTCACTGGTGCCG
AAGTGACGTCGCTCGTCGATTGCTGCTTGGATCTCTTGAAGGACAACAAC
TTTAAGGTTTCTCAAGGCGCGCTTCAGTCTCTTGCCTCCGCTGCCGTGCT
TTCCGGTGAGCACTTTAAGCTGCATTTCAACGCTCTTGTGCCGGCTGTCG
TCGAGCGATTGGGTGACGCTAAACAACCCGTCCGTGATGCTGCTAGGCGC
CTCTTGCTCACTCTCATGGAGGTTTCTTCTCCGACGATTATTGTCGAAAG
AGCAGGCTCTTATGCCTGGACGCATAGAAGTTGGAGAGTACGAGAAGAGT
TTGCGCGAACTGTCACTTCAGCAATTGGTCTTTTTTCTGCTACTGAGCTT
ACTCTTCAGCGAGCTATTCTTCCTCCTATTTTGCAGATGTTGAATGATCC
AAATCCCGGTGTCAGGGAAGCAGCTATACTGTGCATTGAGGAGATGTATA
CCCATGCTGGGACTCAGTTCCGTGATGAACTTCATCGCCATAATCTTCCC
AACTCCATGGTGAAAGATATTAATGCCAGGCTGGAAAGGATTCACCCCCA
AATTCGCTCTTCAGATGGACTTCTAAATAACTTTGCTGCTTTAAAGATAA
GGACGGCAAGCTTTAACCCCCAGAAAAAATAATCCAAAGGGGCAAGAATT
TCTACAAGGGGAAACTTCTCTTTTTGGGAAGGCAAAAAATTAACAAAAAA
AAATTCAAAAAAACCCCAAAAAAAGAAATACTTTGAAAAAGGGAGTCTTA
AATAGGGGAAATTTTAAAAAAAATTGGGGTTTCTCCCCCTGTGTAACCTG
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