DY262541

Overview
NameDY262541
Unique NameDY262541
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1134
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2324 contig Ccv1_Contig2324:1..1134. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY262541 vs. ExPASy Swiss-Prot
Match: ELO3_YEAST (Elongation of fatty acids protein 3 OS=Saccharomyces cerevisiae GN=ELO3 PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 5.100e-58
Identity = 113/241 (46.89%), Postives = 152/241 (63.07%), Query Frame = 1
Query:  247 EIGVPTLDRPFGVTLWPIFSAAWEKMFGYPAEQFKFTPGSTLMSTHKETVXXXXXXXXXXXXXRELMRSRPAFSLNGP--FKVHNLYLTVISGGLLALFIEQLLPTLVRNGIFYTICDLNGGWTDKXXXXXXXXXXXXXXXXIDTVFLVLKKKPLTFLHTYHHGATALLCYTQLLGNTAVSWVVITLNLTVHVVMYWYYFQAARGIRIWWKKYITISQITQFIIDLGFVYFASYIYFNGGY 963
            ++ VP+++ PFG+ LWPIFS  +E   GYPAEQF+F    T ++     V             + ++R+  A  L     F++HNL+LT IS  L  L +EQL+P +  NG+F++IC     +  K                IDTVFLVL++K L FLHTYHHGATALLCYTQL+G T+V WVVI LNL VHV+MYWYYF ++ GIR+WWK+++T  QI QF+IDL FVYFA+Y ++   Y
Sbjct:   28 KVHVPSIENPFGIELWPIFSKVFEYFSGYPAEQFEFIHNKTFLANGYHAVSIIIVYYIIIFGGQAILRALNASPLKFKLLFEIHNLFLTSISLVLWLLMLEQLVPMVYHNGLFWSICSKEA-FAPKLVTLYYLNYLTKFVELIDTVFLVLRRKKLLFLHTYHHGATALLCYTQLIGRTSVEWVVILLNLGVHVIMYWYYFLSSCGIRVWWKQWVTRFQIIQFLIDLVFVYFATYTFYAHKY 267          
BLAST of DY262541 vs. ExPASy Swiss-Prot
Match: ELO2_YEAST (Elongation of fatty acids protein 2 OS=Saccharomyces cerevisiae GN=ELO2 PE=1 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.484e-57
Identity = 115/247 (46.56%), Postives = 153/247 (61.94%), Query Frame = 1
Query:  256 VPTLDRPF-GVTLWPIFSAAWEKMFG--YPAEQFKFTPGSTLMSTHKETVXXXXXXXXXXXXXRELMRSRPAFSLNGPFKVHNLYLTVISGGLLALFIEQLLPTLVRNGIFYTICDLNGGWTDKXXXXXXXXXXXXXXXXIDTVFLVLKKKPLTFLHTYHHGATALLCYTQLLGNTAVSWVVITLNLTVHVVMYWYYFQAARGIRIWWKKYITISQITQFIIDLGFVYFASYIYFNGGYFPLAPKPG 987
            +PTL+RPF  ++LW  F     ++    +   +F+F  G   +ST    +             R L+     F LNG F++HNL LT +S  LL L +EQL+P +V++G+++ IC++ G WT                  IDT FLVLK K LTFLHTYHHGATALLCYTQL+G T++SWV I+LNL VHVVMYWYYF AARGIR+WWK+++T  QI QF++D+GF+YFA Y      YFP+ P  G
Sbjct:   23 LPTLERPFFNISLWEHFDDVVTRVTNGRFVPSEFQFIAGELPLSTLPPVLYAITAYYVIIFGGRFLLSKSKPFKLNGLFQLHNLVLTSLSLTLLLLMVEQLVPIIVQHGLYFAICNI-GAWTQPLVTLYYMNYIVKFIEFIDTFFLVLKHKKLTFLHTYHHGATALLCYTQLMGTTSISWVPISLNLGVHVVMYWYYFLAARGIRVWWKEWVTRFQIIQFVLDIGFIYFAVYQKAVHLYFPILPHCG 268          
BLAST of DY262541 vs. ExPASy Swiss-Prot
Match: ELOH1_SCHPO (Putative elongation of fatty acids protein 1 OS=Schizosaccharomyces pombe GN=SPAC1B2.03c PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 2.432e-55
Identity = 107/243 (44.03%), Postives = 141/243 (58.02%), Query Frame = 1
Query:  259 PTLDRPFGVTLWPIFSAAWEKMFGYPAEQFKFTPGSTLMSTHKETVXXXXXXXXXXXXXRELMRSRPAFSLNGPFKVHNLYLTVISGGLLALFIEQLLPTLVRNGIFYTICDLNGGWTDKXXXXXXXXXXXXXXXXIDTVFLVLKKKPLTFLHTYHHGATALLCYTQLLGNTAVSWVVITLNLTVHVVMYWYYFQAARGIRIWWKKYITISQITQFIIDLGFVYFASYIYFNGGYFPLAPKPG 987
            P++D PFGV LW +F     K  G+   +F++ PG T MS     +             R +M +R        F++HN  LT+ISG LLAL +E++    +RNG+FY +CD +  +T +                +DTVFL LKKKPL FLH YHHG TALLC+TQLLG T+V W VI LNL VHV+MY YYF AA G R+WWK+++T  QI QF++DL   YF +Y +    YFP  P  G
Sbjct:   14 PSIDHPFGVDLWHLFEQLSIKTIGWNPSEFEYIPGKTPMSQWSSVIVSITAYYVIILSGRAIMTNRKPLKQRRLFQLHNFILTIISGALLALLVEEVFRNYMRNGLFYCVCD-SRHFTQRLVTLYYLNYLTKYLELMDTVFLFLKKKPLAFLHCYHHGITALLCFTQLLGRTSVQWGVIGLNLYVHVIMYSYYFLAACGRRVWWKQWVTRVQIIQFVLDLILCYFGTYSHIAFRYFPWLPHVG 255          

HSP 2 Score: 25.409 bits (54), Expect = 2.432e-55
Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 2
Query:  986 GFCAGKEFPSFPGMGILSNY 1045
            G C+G  F +F G G+LS+Y
Sbjct:  255 GDCSGSLFAAFFGCGVLSSY 274          
BLAST of DY262541 vs. ExPASy Swiss-Prot
Match: ELO1_YEAST (Elongation of fatty acids protein 1 OS=Saccharomyces cerevisiae GN=ELO1 PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 5.651e-49
Identity = 103/245 (42.04%), Postives = 139/245 (56.73%), Query Frame = 1
Query:  259 PTLDRPF-GVTLWPIFSAA--WEKMFGYPAEQFKFTPGSTLMSTHKETVXXXXXXXXXXXXXRELMRSRPAFSLNGPFKVHNLYLTVISGGLLALFIEQLLPTLVRNGIFYTICDLNGGWTDKXXXXXXXXXXXXXXXXIDTVFLVLKKKPLTFLHTYHHGATALLCYTQLLGNTAVSWVVITLNLTVHVVMYWYYFQAARGIRIWWKKYITISQITQFIIDLGFVYFASYIYFNGGYFPLAPKP 984
            PT+DRPF  + LW  F+ A  W     +  + F+FT G   +S  +  +             R L++S     L    +VHNL LT +S   L L +EQ+LP + R+G+++ +C++   WT                   DTV +VLK + LTFLHTYHHGATALLCY QL+G TAV+WV +TLNL VHV+MYWYYF +A GIR+WWK ++T  QI QF++DL  VY+  Y      YF  A  P
Sbjct:   18 PTIDRPFFNIYLWDYFNRAVGWATAGRFQPKDFEFTVGKQPLSEPRPVLLFIAMYYVVIFGGRSLVKSCKPLKLRFISQVHNLMLTSVSFLWLILMVEQMLPIVYRHGLYFAVCNVES-WTQPMETLYYLNYMTKFVEFADTVLMVLKHRKLTFLHTYHHGATALLCYNQLVGYTAVTWVPVTLNLAVHVLMYWYYFLSASGIRVWWKAWVTRLQIVQFMLDLIVVYYVLYQKIVAAYFKNACTP 261          
BLAST of DY262541 vs. ExPASy Swiss-Prot
Match: ELOH2_SCHPO (Putative elongation of fatty acids protein 2 OS=Schizosaccharomyces pombe GN=SPAC1639.01c PE=3 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 5.664e-41
Identity = 85/222 (38.29%), Postives = 120/222 (54.05%), Query Frame = 1
Query:  277 FGVTLWPIFSAAWEKMFGYPAEQFKFTPGSTLMSTHKETVXXXXXXXXXXXXXRELMRSRPAFSLNGPFKVHNLYLTVISGGLLALFIEQLLPTLVRNGIFYTICDLNGGWTDKXXXXXXXXXXXXXXXXIDTVFLVLKKKPLTFLHTYHHGATALLCYTQLLGNTAVSWVVITLNLTVHVVMYWYYFQAARGIRIWWKKYITISQITQFIIDLGFVYFASY 942
            F   +W   ++  +  FG     F+F    T  S+                    +MR+R    L   F+ +NL  ++ S  L  L  EQ+ P + ++G F++IC+    WT                   DT FLVL+KKPL FLH YHHGATA+L YTQ++G T++SW++I +NL VHV MY+YY+  A+GIR+ WKK++T  QI QF  DLGF+YFA Y
Sbjct:    9 FQYPIWSWLNSLADATFGKRPSSFEFIVNKTRFSSAPVVATIIISYYLLILVGGRIMRNRQPIRLQKIFQYYNLTFSIASAILALLIFEQVAPAIYKHGFFFSICN-EKAWTQPLVFLYYCAYISKFLELTDTFFLVLRKKPLQFLHCYHHGATAVLVYTQIVGRTSISWLIIEINLLVHVTMYYYYYLVAKGIRVPWKKWVTRFQIVQFFADLGFIYFAVY 229          
BLAST of DY262541 vs. ExPASy Swiss-Prot
Match: ELOV2_HUMAN (Elongation of very long chain fatty acids protein 2 OS=Homo sapiens GN=ELOVL2 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 7.215e-12
Identity = 52/172 (30.23%), Postives = 86/172 (50.00%), Query Frame = 1
Query:  445 MRSRPAFSLNGPFKVHNLYLTVISGGLLALFIEQLLPTLVRNGIFYTICDL-NGGWTD-KXXXXXXXXXXXXXXXXIDTVFLVLKKKP--LTFLHTYHHGATALLCYTQLLGNTAVSWVVI-------TLNLTVHVVMYWYYFQA---ARGIRIWWKKYITISQITQFIIDL 918
            M++RPA SL G   ++NL +T++S  +LA    +L+ +    G      DL + G  D +                +DT+F VL+KK   +TFLH YHH +   + +  L      +W+         TLN  +H++MY YY  +   +    +WWKKY+T +Q+ QF++ +
Sbjct:   56 MKNRPALSLRGILTLYNLGITLLSAYMLA----ELILSTWEGGYNLQCQDLTSAGEADIRVAKVLWWYYFSKSVEFLDTIFFVLRKKTSQITFLHVYHHASMFNIWWCVL------NWIPCGQSFFGPTLNSFIHILMYSYYGLSVFPSMHKYLWWKKYLTQAQLVQFVLTI 217          
BLAST of DY262541 vs. ExPASy Swiss-Prot
Match: ELOV6_CHICK (Elongation of very long chain fatty acids protein 6 OS=Gallus gallus GN=ELOVL6 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.607e-11
Identity = 50/161 (31.06%), Postives = 71/161 (44.10%), Query Frame = 1
Query:  436 RELMRSRPAFSLNGPFKVHNLYLTVISGGLLALFIEQLLPTLVRNGIFYTICDLNGGWTDKXXXXXXXXXXXXXXXXIDTVFLVLKKKPLTFLHTYHHGATALLCYTQLLGNTAVSWVVITLNLTVHVVMYWYYFQAARGIRIWWK--KYITISQITQFII 912
            R LM  R  F L  P  + +L L V S          +L  L+  G+  ++CD +                       DT+F++L+K+ L FLH YHH    L  +       A     +T+N  VH VMY YY   A G R+  K   +IT+SQITQ ++
Sbjct:   48 RHLMNKRAKFELRKPLVLWSLSLAVFSIFGAVRTAPYMLYILMTKGLKQSVCDQSFYIGPVSKFWAYAFVLSKAPELGDTIFIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVHAVMYSYYALRAAGFRVSRKFAMFITLSQITQMLV 208          
BLAST of DY262541 vs. ExPASy Swiss-Prot
Match: ELOV2_MOUSE (Elongation of very long chain fatty acids protein 2 OS=Mus musculus GN=Elovl2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.742e-11
Identity = 51/173 (29.48%), Postives = 85/173 (49.13%), Query Frame = 1
Query:  445 MRSRPAFSLNGPFKVHNLYLTVISGGLLALFIEQLLPTLVRNGIFYTIC---DLNGGWTDKXXXXXXXXXXXXXXXXIDTVFLVLKKKP--LTFLHTYHHGATALLCYTQLLGNTAVSWVVI-------TLNLTVHVVMYWYYFQA---ARGIRIWWKKYITISQITQFIIDL 918
            M++RPA SL G   ++NL +T++S  +L   +E +L +    G +   C   D  G    +                +DT+F VL+KK   +TFLH YHH +   + +  L      +W+         TLN  +H++MY YY  +   +    +WWKKY+T +Q+ QF++ +
Sbjct:   56 MKNRPALSLRGILTLYNLAITLLSAYML---VELILSSW--EGGYNLQCQNLDSAGEGDVRVAKVLWWYYFSKLVEFLDTIFFVLRKKTNQITFLHVYHHASMFNIWWCVL------NWIPCGQSFFGPTLNSFIHILMYSYYGLSVFPSMHKYLWWKKYLTQAQLVQFVLTI 217          
BLAST of DY262541 vs. ExPASy Swiss-Prot
Match: ELOV6_RAT (Elongation of very long chain fatty acids protein 6 OS=Rattus norvegicus GN=Elovl6 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.581e-11
Identity = 57/177 (32.20%), Postives = 80/177 (45.20%), Query Frame = 1
Query:  436 RELMRSRPAFSLNGPFKVHNLYLTVISGGLLALFIEQLLPTLVRNGIFYTICDLN--GGWTDKXXXXXXXXXXXXXXXXIDTVFLVLKKKPLTFLHTYHHGATALLCYTQLLGNTAVSWVVITLNLTVHVVMYWYYFQAARGIRIWWK--KYITISQITQFIIDLGFVYFASYIYFN 954
            R LM  R  F L  P  + +L L V S          +L  L+  G+  ++CD +   G   K                 DT+F++L+K+ L FLH YHH    L  +       A     +T+N  VH VMY YY   A G R+  K   +IT+SQITQ +  +G V   +Y+ FN
Sbjct:   48 RHLMNKRAKFELRKPLVLWSLTLAVFSIFGALRTGAYMLYILMTKGLKQSVCDQSFYNGPVSKFWAYAFVLSKAPELG--DTIFIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVHAVMYSYYALRAAGFRVSRKFAMFITLSQITQML--MGCV--INYLVFN 218          
BLAST of DY262541 vs. ExPASy Swiss-Prot
Match: ELOV6_MOUSE (Elongation of very long chain fatty acids protein 6 OS=Mus musculus GN=Elovl6 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.581e-11
Identity = 57/177 (32.20%), Postives = 80/177 (45.20%), Query Frame = 1
Query:  436 RELMRSRPAFSLNGPFKVHNLYLTVISGGLLALFIEQLLPTLVRNGIFYTICDLN--GGWTDKXXXXXXXXXXXXXXXXIDTVFLVLKKKPLTFLHTYHHGATALLCYTQLLGNTAVSWVVITLNLTVHVVMYWYYFQAARGIRIWWK--KYITISQITQFIIDLGFVYFASYIYFN 954
            R LM  R  F L  P  + +L L V S          +L  L+  G+  ++CD +   G   K                 DT+F++L+K+ L FLH YHH    L  +       A     +T+N  VH VMY YY   A G R+  K   +IT+SQITQ +  +G V   +Y+ FN
Sbjct:   48 RHLMNKRAKFELRKPLVLWSLTLAVFSIFGALRTGAYMLYILMTKGLKQSVCDQSFYNGPVSKFWAYAFVLSKAPELG--DTIFIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVHAVMYSYYALRAAGFRVSRKFAMFITLSQITQML--MGCV--INYLVFN 218          
The following BLAST results are available for this feature:
BLAST of DY262541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
ELO3_YEAST5.100e-5846.89Elongation of fatty acids protein 3 OS=Saccharomyc... [more]
ELO2_YEAST1.484e-5746.56Elongation of fatty acids protein 2 OS=Saccharomyc... [more]
ELOH1_SCHPO2.432e-5544.03Putative elongation of fatty acids protein 1 OS=Sc... [more]
ELO1_YEAST5.651e-4942.04Elongation of fatty acids protein 1 OS=Saccharomyc... [more]
ELOH2_SCHPO5.664e-4138.29Putative elongation of fatty acids protein 2 OS=Sc... [more]
ELOV2_HUMAN7.215e-1230.23Elongation of very long chain fatty acids protein ... [more]
ELOV6_CHICK1.607e-1131.06Elongation of very long chain fatty acids protein ... [more]
ELOV2_MOUSE2.742e-1129.48Elongation of very long chain fatty acids protein ... [more]
ELOV6_RAT3.581e-1132.20Elongation of very long chain fatty acids protein ... [more]
ELOV6_MOUSE3.581e-1132.20Elongation of very long chain fatty acids protein ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100BA12RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262541 ID=DY262541; Name=DY262541; organism=Citrus clementina; type=EST; length=1134bp
TGCATTTCACGTCGCTCCTTTGCTGAGAGTTGGATCCCGACCTGCAACCC
ACGACGCGCATTCGGTAACAGGCTGTGCGACTGTTGAGGTGCCTGCACGC
GACACCACCAAGAAATCCAATTTGATCCGCCGCTTCCCGCTGGATTGATA
CTCGACAAAAACAGTCGCTCTCTGGAACAACACCCTCAAAAACACCCACA
ACAACTCCACGACACGCCCTCCAGCATGTCTGCCCTCAAGAACTTCGAGA
TCGGTGTTCCGACTCTCGACCGTCCCTTCGGCGTCACCCTCTGGCCCATT
TTCTCCGCCGCATGGGAGAAGATGTTTGGCTACCCGGCTGAGCAGTTCAA
GTTCACGCCCGGCAGCACTCTTATGTCGACACACAAAGAGACCGTCATTG
CGCTCATTGCATACTACATCATCATTTTGGGTGGTCGCGAGCTCATGAGG
AGCCGCCCGGCCTTCAGCCTGAACGGTCCTTTCAAGGTCCACAACCTGTA
CCTGACCGTCATCAGCGGTGGTCTTCTGGCTCTCTTCATTGAGCAGCTTC
TCCCCACTCTGGTCAGGAACGGTATCTTCTACACCATCTGCGATCTCAAT
GGCGGCTGGACCGACAAGCTCGTCCTGCTTTACTACCTCAACTACCTCAC
TAAGTACCTCGAGCTGATTGACACCGTCTTCCTCGTCCTCAAGAAGAAGC
CCTTGACCTTCCTCCACACCTACCACCACGGTGCCACCGCTCTTCTCTGC
TACACCCAGCTTCTCGGCAACACCGCAGTCTCCTGGGTCGTCATCACCCT
CAACCTCACCGTCCACGTCGTCATGTACTGGTACTACTTCCAGGCCGCGC
GTGGCATCCGCATCTGGTGGAAGAAGTACATCACCATTTCTCAGATCACC
CAGTTCATCATCGACCTCGGCTTCGTCTACTTCGCTTCCTACATCTACTT
CAACGGCGGCTACTTCCCCCTGGCTCCCAAGCCCGGGCTTCTGCGCCGGC
AAGGAGTTCCCTTCCTTCCCTGGCATGGGCATCTTGTCCAACTACCTCCT
TTCTCTTCACCGAATTCAACTTCTCCACCTACCCAAAGCCCTGTCCCGAA
GGGGTCGCGGCTCGCCCTGCCCGCCCCTCTCATT
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