DY262571

Overview
NameDY262571
Unique NameDY262571
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1322
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262571 vs. ExPASy Swiss-Prot
Match: RGLG2_ARATH (E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.218e-52
Identity = 90/136 (66.18%), Postives = 111/136 (81.62%), Query Frame = 2
Query:  533 PKENIISSARDKMKKKYSFIPDTFSSLEQVTAALRDSGLESSNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEVFSFHDDHTPCHGFEEVLGCYRNIV 940
            P ++  S  + ++++KYS I D +SSLEQVT AL  +GLESSNLI+GIDFTKSNEWTG  SFN +SLH IG +PNPYE+AITIIG+TLA FDEDNLIPC+GFGDA+THDQ+VFSF+ +   C+GFEEVL  Y+ IV
Sbjct:   80 PSQSYGSDNKKRLERKYSKISDDYSSLEQVTEALARAGLESSNLIVGIDFTKSNEWTGARSFNRKSLHFIGSSPNPYEQAITIIGRTLAAFDEDNLIPCYGFGDASTHDQDVFSFNSEDRFCNGFEEVLSRYKEIV 215          

HSP 2 Score: 38.5058 bits (88), Expect = 2.218e-52
Identity = 23/75 (30.67%), Postives = 44/75 (58.67%), Query Frame = 3
Query:  930 ETLFKLATCKTTSYAPVVEAAMDIVERVEASI-MFLLSCQWPVYKNVNTGDGKLNYKKQKT*N*LVAAISFPFSL 1151
            E + +L     TS+AP+++ AM IVE+      + ++     V ++V+T +G+L+ ++QKT + +V A   P S+
Sbjct:  213 EIVPQLKLAGPTSFAPIIDMAMTIVEQSGGQYHVLVIIADGQVTRSVDTENGQLSPQEQKTVDAIVQASKLPLSI 287          
BLAST of DY262571 vs. ExPASy Swiss-Prot
Match: RGLG1_ARATH (E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.540e-50
Identity = 87/127 (68.50%), Postives = 104/127 (81.89%), Query Frame = 2
Query:  560 RDKMKKKYSFIPDTFSSLEQVTAALRDSGLESSNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEVFSFHDDHTPCHGFEEVLGCYRNIV 940
            R K  ++YS I D +SSL QV+ AL  +GLESSNLI+GIDFTKSNEWTG  SFN +SLH + +TPNPYE+AITIIG+TLA FDEDNLIPC+GFGDA+THDQ+VFSF+ +   C+GFEEVL  YR IV
Sbjct:  123 RKKFDRRYSKISDNYSSLLQVSEALGRAGLESSNLIVGIDFTKSNEWTGAKSFNRKSLHHLSNTPNPYEQAITIIGRTLAAFDEDNLIPCYGFGDASTHDQDVFSFYPEGRFCNGFEEVLARYREIV 249          

HSP 2 Score: 40.0466 bits (92), Expect = 1.540e-50
Identity = 23/75 (30.67%), Postives = 44/75 (58.67%), Query Frame = 3
Query:  930 ETLFKLATCKTTSYAPVVEAAMDIVERVEASI-MFLLSCQWPVYKNVNTGDGKLNYKKQKT*N*LVAAISFPFSL 1151
            E + +L     TS+AP++E AM +VE+      + ++     V ++V+T  G+L+ ++QKT + +V A + P S+
Sbjct:  247 EIVPQLKLAGPTSFAPIIEMAMTVVEQSSGQYHVLVIIADGQVTRSVDTEHGRLSPQEQKTVDAIVKASTLPLSI 321          
BLAST of DY262571 vs. ExPASy Swiss-Prot
Match: CPNA2_CAEEL (Copine domain-containing protein 2 OS=Caenorhabditis elegans GN=cpna-2 PE=2 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 1.907e-22
Identity = 57/151 (37.75%), Postives = 82/151 (54.30%), Query Frame = 2
Query:  602 FSSLEQVTAALRDSGLESSNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTP-NPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEVFSF---HDDHTPCHGFEEVLGCYRNIVQTCDLQDHFLXXXXXXXXXXXXXXXXQYHVFVIL 1042
            F +L+ +  A++ +GLE SNLI GID+TKSN + G+ +F+ R LH I     NPY++ I I+GKTL+ FD D  IP +GFGD    D  +F+    +D    C+GFEEVL  Y  +  T ++                      YH+ VI+
Sbjct: 7299 FKTLDDIVKAIKHAGLEYSNLIFGIDYTKSNFYQGERTFDKRPLHTIDPAEMNPYQQVIQIVGKTLSSFDADGQIPAYGFGDEEFTDHGIFNIAERYDLEKDCNGFEEVLRVYNEVTPTIEMSGPTNFVPLIDRAIEICKEKHSYHILVIV 7449          
The following BLAST results are available for this feature:
BLAST of DY262571 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RGLG2_ARATH2.218e-5266.18E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis t... [more]
RGLG1_ARATH1.540e-5068.50E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis t... [more]
CPNA2_CAEEL1.907e-2237.75Copine domain-containing protein 2 OS=Caenorhabdit... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA100BD07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262571 ID=DY262571; Name=DY262571; organism=Citrus clementina; type=EST; length=1322bp
ACAGAGTATAGCAGCCGTCACAAACAAGCGTCTTAAAAGCTTTATGGTAT
CCAAGAGAGAGTTGCTGAGACTGAGGTTAATCTGGTAACTACAAAGATTC
TAGGGTTGAAGATTCTGGTTTGAGTTGAGAAAGAAATATGCTCAAGGAAA
GCATAACTTCCACCACAGATCAATGAATAAGCATCTCGCAGCCTGTCCCA
GTTCATTAATCCTGTGTGCAAGATTTCTCTTTGCCTTTCTTTAATCCCCA
CTTGGTGACACCTTTTTCTTCATATAAAAATATGCTATGCTCTCTCTATA
AATCTTTTGTTTCTCTTCTTACTTAATAATTTAAGCTTCTGTGTGAGGCG
GTGAACATGATATGGGCAACATTTTTGCCTTCCTTAAACAGCGTAATCGC
AGCATCAGCATCAGCAGGATAAGTAGCAGTAGAAGTACTAGTGCTTCTGC
AAATCATAGATACCCATCTATGTCTAAACAAGCATCTTCTGTTTCTACGA
GTGGCACCTCATCTGCTGCTGCTAGTGCTACCCCTAAAGAAAATATCATT
TCTTCTGCCAGAGACAAGATGAAGAAAAAGTATTCATTTATTCCTGATAC
TTTTTCATCCCTTGAACAGGTAACAGCTGCCTTGAGAGATTCTGGTCTAG
AATCATCCAATCTCATTCTTGGGATCGATTTCACTAAAAGCAATGAATGG
ACTGGCAAAGTTTCATTCAATAATCGGAGCCTTCATGCCATTGGCGACAC
ACCTAATCCATATGAGAAAGCCATCACTATCATTGGAAAGACTCTGGCTC
CATTTGATGAAGACAACTTAATTCCTTGTTTTGGTTTTGGTGATGCTACC
ACACATGATCAAGAAGTGTTTAGTTTTCATGATGATCATACCCCGTGCCA
TGGTTTTGAAGAAGTTTTGGGCTGCTATAGAAACATTGTTCAAACTTGCG
ACTTGCAAGACCACTTCTTATGCTCCGGTGGTTGAGGCTGCAATGGACAT
TGTGGAAAGAGTGGAGGCCAGTATCATGTTTTTGTTATCTTGCCAATGGC
CGGTTTACAAGAATGTCAATACCGGGGATGGGAAACTGAATTACAAAAAA
CAAAAAACATAAAATTAATTGGTTGCTGCCATTTCTTTTCCTTTTTCCCT
TGGGGCTTGTTGGGAGCCGGGGAAGGGGCCCTGTGGAAAAAAAGTGCAAA
AAATTTGAAAGACAAAGAATCTCCCCGCCGGGGAAATTTTATAAAAATTT
TTTTTTTTTTTTGTATTTTTTTTTTCGCCCTTTTTTTTTTATAAAAAAAA
AGAACAACTCCCTTTTTTTAGA
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