DY262594

Overview
NameDY262594
Unique NameDY262594
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1283
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10668 contig Ccv1_Contig10668:215..1497. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY262594 vs. ExPASy Swiss-Prot
Match: PP165_ARATH (Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 3.883e-73
Identity = 127/205 (61.95%), Postives = 162/205 (79.02%), Query Frame = 1
Query:  364 SLILPDKFTLPFVIKSCVGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMILGYAHIGSYAEALDVFRQMQIVGIEPDEISIVPILPACAQLGSLELGEWIHMYCDKKSLLRRTVICNALIEMYIKCGCXHQASQLFDQMVKRDV 978
            S  LPD+FT PF+ KSC  L    LGKQ+H H+CKFG + H +TENAL+D+Y K D+L++AHKVF+EM +RD+++WN+L+SGYARLGQMKKA+ LF  M   TIVSWTAMI GY  IG Y EA+D FR+MQ+ GIEPDEIS++ +LP+CAQLGSLELG+WIH+Y +++  L++T +CNALIEMY KCG   QA QLF QM  +DV
Sbjct:  103 SFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDV 307          

HSP 2 Score: 77.411 bits (189), Expect = 2.027e-13
Identity = 48/159 (30.19%), Postives = 82/159 (51.57%), Query Frame = 1
Query:  370 ILPDKFTLPFVIKSCVGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTI----VSWTAMILGYAHIGSYAEALDVFRQM-QIVGIEPDEISIVPILPACAQLGSLE 831
            I PD+ +L  V+ SC  L    LGK IH +  + G    +   NAL+++Y KC  + +A ++F +M  +D+++W+ +ISGYA  G    A   F++M    +    +++  ++   +H+G + E L  F  M Q   IEP       ++   A+ G LE
Sbjct:  237 IEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLE 395          
BLAST of DY262594 vs. ExPASy Swiss-Prot
Match: PP235_ARATH (Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 2.900e-44
Identity = 85/206 (41.26%), Postives = 126/206 (61.17%), Query Frame = 1
Query:  364 SLILPDKFTLPFVIKSCVGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMILGYAHIGSYAEALDVFRQMQIVGIEPDEISIVPILPACAQLGSLELGEWIHMYCDKKSLLRRTVICNALIEMYIKCGCXHQASQLFDQMVKRDVF 981
            +L+ P   TL  V+ +C  +    L K++H +V +   +     ENAL++ Y  C E+  A ++F  M  RD+++W +++ GY   G +K AR  FD+MP    +SWT MI GY   G + E+L++FR+MQ  G+ PDE ++V +L ACA LGSLE+GEWI  Y DK  +    V+ NALI+MY KCGC  +A ++F  M +RD F
Sbjct:  230 NLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKF 435          

HSP 2 Score: 86.2705 bits (212), Expect = 4.364e-16
Identity = 55/207 (26.57%), Postives = 94/207 (45.41%), Query Frame = 1
Query:  370 ILPDKFTLPFVIKSCV----GLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMILGYAHIGSYAEALDVFRQMQIVGIEPDEISIVPILPACAQLGSLELGEWIHMYCDKKSLLRRTVICNALIEMYIKCGCXHQASQLFDQMVKRDV 978
            + PD  T PF++         L C   GK++H HV KFGL S+   +NAL+ +Y  C  +  A  VF+     D+ +WN +ISGY R+ +                               Y E++++  +M+   + P  ++++ +L AC+++   +L + +H Y  +        + NAL+  Y  CG    A ++F  M  RDV
Sbjct:  130 VTPDSHTFPFLLNGLKRDGGALAC---GKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKE-------------------------------YEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDV 302          
BLAST of DY262594 vs. ExPASy Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 4.257e-42
Identity = 84/203 (41.38%), Postives = 124/203 (61.08%), Query Frame = 1
Query:  370 ILPDKFTLPFVIKSCVGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMILGYAHIGSYAEALDVFRQMQIVGIEPDEISIVPILPACAQLGSLELGEWIHMYCDKKSLLRRTVICNALIEMYIKCGCXHQASQLFDQMVKRDV 978
            +LP+ +T PFV+KSC        G+QIH HV K G         +L+ +Y +   L +AHKVF++   RD+V++  LI GYA  G ++ A+ LFD++P   +VSW AMI GYA  G+Y EAL++F+ M    + PDE ++V ++ ACAQ GS+ELG  +H++ D         I NALI++Y KCG    A  LF+++  +DV
Sbjct:  130 LLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDV 332          

HSP 2 Score: 21.1718 bits (43), Expect = 4.257e-42
Identity = 8/17 (47.06%), Postives = 11/17 (64.71%), Query Frame = 3
Query:  978 VSWSTMIGGLQIMQSSK 1028
            +SW+T+IGG   M   K
Sbjct:  333 ISWNTLIGGYTHMNLYK 349          

HSP 3 Score: 124.405 bits (311), Expect = 1.446e-27
Identity = 65/205 (31.71%), Postives = 110/205 (53.66%), Query Frame = 1
Query:  370 ILPDKFTLPFVIKSCVGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMILGYAHIGSYAEALDVFRQMQIVGIEPDEISIVPILPACAQLGSLELGEWIHMYCDK--KSLLRRTVICNALIEMYIKCGCXHQASQLFDQMVKRDV 978
            + PD+ T+  V+ +C       LG+Q+H  +   G  S+    NAL+DLY KC                               G+++ A  LF+++PY  ++SW  +I GY H+  Y EAL +F++M   G  P++++++ ILPACA LG++++G WIH+Y DK  K +   + +  +LI+MY KCG    A Q+F+ ++ + +
Sbjct:  262 VRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKC-------------------------------GELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSL 435          

HSP 4 Score: 73.9442 bits (180), Expect = 2.241e-12
Identity = 56/228 (24.56%), Postives = 102/228 (44.74%), Query Frame = 1
Query:  376 PDKFTLPFVIKSCVGLLCPSLGKQIHAHVCKF--GLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMILGYAHIGSYAEALDVFRQMQIVGIEPDEISIVPILPACAQLGSLELGEWIH--MYCDKKSLLRRTVICNALIEMYIKCGCXHQASQLFDQMVKRDVFHGVP*LEACKSCKAQKHSSISE 1047
            P+  T+  ++ +C  L    +G+ IH ++ K   G+ + S    +L+D+Y KC                               G ++ A  +F+ + + ++ SW AMI G+A  G    + D+F +M+ +GI+PD+I+ V +L AC+  G L+LG  I   M  D K +  +      +I++    G   +A ++ + M       GV      K+CK   +  + E
Sbjct:  365 PNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKC-------------------------------GDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYK-MTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEP--DGVIWCSLLKACKMHGNVELGE 558          
BLAST of DY262594 vs. ExPASy Swiss-Prot
Match: PP295_ARATH (Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.647e-39
Identity = 80/209 (38.28%), Postives = 127/209 (60.77%), Query Frame = 1
Query:  370 ILPDKFTLPFVIKSCVGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMILGYAHIGSYAEALDVFRQMQI-----VGIEPDEISIVPILPACAQLGSLELGEWIHMYCDKKSLLRRTVICNALIEMYIKCGCXHQASQLFDQM-VKRDV 978
            + PD  T PF++ S    L   LG++ HA +  FGL        +LL++Y  C +L  A +VF++   +D+ AWN++++ YA+ G +  AR LFD+MP   ++SW+ +I GY   G Y EALD+FR+MQ+       + P+E ++  +L AC +LG+LE G+W+H Y DK  +    V+  ALI+MY KCG   +A ++F+ +  K+DV
Sbjct:   58 VSPDFHTFPFLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDV 266          
BLAST of DY262594 vs. ExPASy Swiss-Prot
Match: PP321_ARATH (Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana GN=PCMP-E101 PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 8.172e-39
Identity = 87/235 (37.02%), Postives = 128/235 (54.47%), Query Frame = 1
Query:  370 ILPDKFTLPFVIKSCVGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKC---------------------DELI----------EAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMILGYAHIGSYAEALDVFRQMQIVGIE-PDEISIVPILPACAQLGSLELGEWIHMYCDKKSLLRRTVICNALIEMYIKCGCXHQASQLFDQMVKRDV 978
            + PDK++  FV+K+C        G+QIH    K GL +    EN L+++YG+                      + L+          EA  +F+EM +R++ +WN +ISGYA  G +K+A+ +FD MP   +VSW AM+  YAH+G Y E L+VF +M     E PD  ++V +L ACA LGSL  GEW+H+Y DK  +     +  AL++MY KCG   +A ++F    KRDV
Sbjct:  136 VFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLATALVDMYSKCGKIDKALEVFRATSKRDV 370          

HSP 2 Score: 76.2554 bits (186), Expect = 4.516e-13
Identity = 47/179 (26.26%), Postives = 90/179 (50.28%), Query Frame = 1
Query:  376 PDKFTLPFVIKSCVGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTI----VSWTAMILGYAHIGSYAEALDVFRQM-QIVGIEPDEISIVPILPACAQLGSLELGEWI--HMYCDKKSLLRRTVI 891
            PD FTL  V+ +C  L   S G+ +H ++ K G++       AL+D+Y KC ++ +A +VF   + RD+  WN++IS  +  G  K A  +F +M Y       +++  ++    H+G   +A  +F  M  +  +EP       ++    ++G +E  E +   +  D+ S+L  +++
Sbjct:  302 PDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLATALVDMYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACNHVGMLDQARKLFEMMSSVYRVEPTIEHYGCMVDLLGRMGKIEEAEELVNEIPADEASILLESLL 480          
BLAST of DY262594 vs. ExPASy Swiss-Prot
Match: PP433_ARATH (Pentatricopeptide repeat-containing protein At5g56310 OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.394e-38
Identity = 84/203 (41.38%), Postives = 125/203 (61.58%), Query Frame = 1
Query:  376 PDKFTLPFVIKSCVGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMP--YTTIVSWTAMILGYAHIGSYAEALDVFRQMQIVGIEPDEISIVPILPACAQLGSLELGEWIHMYCDKKSLLRRTVICNALIEMYIKCGCXHQASQLFDQMVKRDV 978
            PD FT PFV+K  V +     G+QIH  V  FG  S       L+ +Y  C  L +A K+F+EM  +D+  WN L++GY ++G+M +AR L + MP      VSWT +I GYA  G  +EA++VF++M +  +EPDE++++ +L ACA LGSLELGE I  Y D + + R   + NA+I+MY K G   +A  +F+ + +R+V
Sbjct:  114 PDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNV 316          
BLAST of DY262594 vs. ExPASy Swiss-Prot
Match: PP425_ARATH (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.821e-38
Identity = 85/225 (37.78%), Postives = 131/225 (58.22%), Query Frame = 1
Query:  346 YNPRAGSLILPDKFTLPFVIKSCVGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEE---------MTDR-----DIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMILGYAHIGSYAEALDVFRQMQIVGIEPDEISIVPILPACAQLGSLELGEWIHMYCDKKSLLRRTVICNALIEMYIKCGCXHQASQLFDQMVKRDV 978
            Y   +   + P++FT P V+K+C        GKQIH    K+G        + L+ +Y  C  + +A  +F +         MTDR     +IV WN +I GY RLG  K ARMLFDKM   ++VSW  MI GY+  G + +A++VFR+M+   I P+ +++V +LPA ++LGSLELGEW+H+Y +   +    V+ +ALI+MY KCG   +A  +F+++ + +V
Sbjct:  116 YEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENV 340          
BLAST of DY262594 vs. ExPASy Swiss-Prot
Match: PP257_ARATH (Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidopsis thaliana GN=PCMP-A6 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 4.056e-38
Identity = 79/195 (40.51%), Postives = 112/195 (57.44%), Query Frame = 1
Query:  379 DKFTLPFVIKSCVGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMILGYAHIGSYAEALDVFRQMQIVGIEPDEISIVPILPACAQLGSLELGEWIHMYCDKKSLLRRTVICNALIEMYIKCGCXHQASQLFDQM 963
            DKFT PFVIK+C+      LG Q+H    K G  +    +N L+DLY KC +     KVF++M  R IV+W  ++ G     Q+  A ++F++MP   +VSWTAMI  Y       EA  +FR+MQ+  ++P+E +IV +L A  QLGSL +G W+H Y  K   +    +  ALI+MY KCG    A ++FD M
Sbjct:  118 DKFTFPFVIKACLASSSIRLGTQVHGLAIKAGFFNDVFFQNTLMDLYFKCGKPDSGRKVFDKMPGRSIVSWTTMLYGLVSNSQLDSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLFRRMQVDDVKPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKCGSLQDARKVFDVM 312          
BLAST of DY262594 vs. ExPASy Swiss-Prot
Match: PP200_ARATH (Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 6.918e-38
Identity = 79/203 (38.92%), Postives = 120/203 (59.11%), Query Frame = 1
Query:  370 ILPDKFTLPFVIKSCVGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMILGYAHIGSYAEALDVFRQMQIVGIEPDEISIVPILPACAQLGSLELGEWIHMYCDKKSLLRRTVICNALIEMYIKCGCXHQASQLFDQMVKRDV 978
            + P + T P V K+   L     G+Q+H  V K GL+  S   N +L +Y  C  LIEA ++F  M   D+VAWN++I G+A+ G + +A+ LFD+MP    VSW +MI G+   G + +ALD+FR+MQ   ++PD  ++V +L ACA LG+ E G WIH Y  +      +++  ALI+MY KCGC  +   +F+   K+ +
Sbjct:  122 VKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQL 324          
BLAST of DY262594 vs. ExPASy Swiss-Prot
Match: PPR13_ARATH (Pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 4.484e-37
Identity = 79/204 (38.73%), Postives = 115/204 (56.37%), Query Frame = 1
Query:  376 PDKFTLPFVIKSCVGLLCPS--LGKQIHAHVCKFGL-KSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMILGYAHIGSYAEALDVFRQMQIVGIEPDEISIVPILPACAQLGSLELGEWIHMYCDKKSLLRRTVICNALIEMYIKCGCXHQASQLFDQMVKRDV 978
            P+  T   ++  C      S  LG  +H + CK GL ++H +   A++ +Y K     +A  VF+ M D++ V WN +I GY R GQ+  A  +FDKMP   ++SWTAMI G+   G   EAL  FR+MQI G++PD ++I+  L AC  LG+L  G W+H Y   +       + N+LI++Y +CGC   A Q+F  M KR V
Sbjct:   69 PNHITFIALLSGCGDFTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTV 272          

HSP 2 Score: 73.559 bits (179), Expect = 2.927e-12
Identity = 53/200 (26.50%), Postives = 89/200 (44.50%), Query Frame = 1
Query:  370 ILPDKFTLPFVIKSCVGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMILGYAHIGSYAEALDVFRQMQIVGIEPDEISIVPILPACAQLGSLELG--EWIHMYCDKKSLLRRTVICNALIEMYIKCGCXHQASQLFDQM 963
            + PD   +   + +C  L   S G  +H +V     K++    N+L+DLY +C                               G ++ AR +F  M   T+VSW ++I+G+A  G+  E+L  FR+MQ  G +PD ++    L AC+ +G +E G   +  M CD + +  R      L+++Y + G    A +L   M
Sbjct:  202 VKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRC-------------------------------GCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYR-ISPRIEHYGCLVDLYSRAGRLEDALKLVQSM 369          
The following BLAST results are available for this feature:
BLAST of DY262594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 193
Match NameE-valueIdentityDescription
PP165_ARATH3.883e-7361.95Pentatricopeptide repeat-containing protein At2g20... [more]
PP235_ARATH2.900e-4441.26Putative pentatricopeptide repeat-containing prote... [more]
PPR21_ARATH4.257e-4241.38Pentatricopeptide repeat-containing protein At1g08... [more]
PP295_ARATH1.647e-3938.28Pentatricopeptide repeat-containing protein At3g62... [more]
PP321_ARATH8.172e-3937.02Pentatricopeptide repeat-containing protein At4g18... [more]
PP433_ARATH1.394e-3841.38Pentatricopeptide repeat-containing protein At5g56... [more]
PP425_ARATH1.821e-3837.78Pentatricopeptide repeat-containing protein At5g48... [more]
PP257_ARATH4.056e-3840.51Pentatricopeptide repeat-containing protein At3g26... [more]
PP200_ARATH6.918e-3838.92Pentatricopeptide repeat-containing protein At2g42... [more]
PPR13_ARATH4.484e-3738.73Pentatricopeptide repeat-containing protein At1g05... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA100BF07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262594 ID=DY262594; Name=DY262594; organism=Citrus clementina; type=EST; length=1283bp
ACTAAACCTAAAAATGAATTAAAAAACAACAAAAAAATCGTGACCCTGCA
GCCCTCACTTTTCTATTCACTGCAGCCCTCACTCTCAATCCAGTTCACTG
CAGCTCCCTCTTTCCCCTCAATTTTCTCAATCCAGTTGCAGCAAATCTCT
CTCTTGGTCGCTCTTGGTGTGCTAGCCACTGCCGCTGCTCTTTCTCCGCC
GTAACCGCTGCTGCTCCGACTCTGTCCAGCTGCTGCTACTCGGACTCCGT
CCAGCTGCTGCTACTTCGTTTTTGCTCTCTTGGATCTGCACTTGCTCTCT
CGGATCTTCATCTACTGCTACTTCATTGTCACTTGCCGGTAATTATATAA
CCCACGAGCTGGAAGCCTAATTTTGCCTGATAAATTTACATTACCGTTTG
TGATTAAATCATGTGTGGGGCTGTTGTGTCCTTCCCTGGGAAAGCAAATT
CATGCCCATGTGTGTAAATTTGGGCTGAAGTCGCATTCCATAACAGAGAA
TGCACTTCTAGATTTGTATGGAAAATGTGATGAGCTAATTGAGGCACACA
AAGTGTTCGAGGAAATGACTGATAGAGATATAGTTGCTTGGAATAATCTT
ATTTCTGGGTATGCTAGATTGGGTCAAATGAAGAAAGCAAGAATGCTATT
TGATAAGATGCCTTATACGACTATTGTCTCATGGACTGCAATGATTTTGG
GGTATGCACATATAGGGAGCTATGCTGAAGCACTGGATGTATTTCGGCAA
ATGCAAATAGTGGGTATTGAACCTGATGAGATAAGTATCGTACCTATTTT
GCCAGCTTGTGCACAACTAGGATCTCTTGAGCTAGGGGAATGGATTCATA
TGTATTGTGATAAAAAATCACTGTTGCGGAGGACTGTTATTTGCAATGCT
CTCATCGAAATGTACATAAAATGTGGGTGCATNCATCAAGCAAGTCAGCT
GTTTGATCAGATGGTAAAGAGAGATGTGTTTCATGGAGTACCATGATTGG
AGGCTTGCAAATCATGCAAAGCTCAAAAACATTCATCTATTTCAGAATGC
AAAAAGAAATTGCACTTTTAAGGGCCAGAATACATCTAAAGGAAAAATTG
GAACAGTAATTTTTTAAAATAATTGGTTAAAACAGGGGGTGAAAAAAAAA
CCAAAATTAAAAAGGAAAAAAAAGGAAAAAGGTAAAATTTCTTTTTTAAA
AAAGTTAAATTTTAAAAATTTTTAAAATAAGGAAATTTTTTTTATAAAAA
AAAATTTTGGTTTAAAAAAAATTTTTTGTGTGT
back to top