DY262595

Overview
NameDY262595
Unique NameDY262595
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1155
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262595 vs. ExPASy Swiss-Prot
Match: SDF2_ARATH (Stromal cell-derived factor 2-like protein OS=Arabidopsis thaliana GN=At2g25110 PE=2 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 2.575e-89
Identity = 147/184 (79.89%), Postives = 168/184 (91.30%), Query Frame = 1
Query:  331 ETVEITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTES 882
            E VEITYG+ +KLMHEKTKFRLHSH+VPYGSGSGQQSVTGFP V D+NSYWIVKP+ G + KQGD +KSG  IRLQHM+TRKWLHSHLHASPISGNLE+SCFG +  SDTGD+W+++IEGSGKTW+QDQR+RLQH+DT GYLHSH KKYQRIAGGQQEVCG+REK+ADN+WLAAEGVYLP+ ES
Sbjct:   33 EGVEITYGSAIKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPGVVDSNSYWIVKPVPGTTEKQGDAVKSGATIRLQHMKTRKWLHSHLHASPISGNLEVSCFGDDTNSDTGDHWKLIIEGSGKTWKQDQRVRLQHIDTSGYLHSHDKKYQRIAGGQQEVCGIREKKADNIWLAAEGVYLPLNES 216          
BLAST of DY262595 vs. ExPASy Swiss-Prot
Match: SDF2_DICDI (Stromal cell-derived factor 2-like protein OS=Dictyostelium discoideum GN=DDB_G0284847 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.385e-42
Identity = 90/179 (50.28%), Postives = 112/179 (62.57%), Query Frame = 1
Query:  340 EITYGTVLKLMHEKTKFRLHSHEVPYGS---GSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHS-HPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVY 864
            ++TYG+++KL H  T FRLHSH+V YGS   GSGQQSVTGFP+ DD NS W++K   G    QG  +K+G IIRL H  T+K LHSHL  SP++   E+SCFG   E DTGD W V  E SGK W + Q +R +H DT  YL +    KYQ    GQ E+ G + K  D  W   EG+Y
Sbjct:   31 KVTYGSMVKLAHVPTNFRLHSHKVSYGSSGGGSGQQSVTGFPENDDTNSLWVIKGPHGNRVLQGTVVKNGDIIRLVHSNTKKNLHSHLAVSPLTKQNEVSCFGENGEGDTGDNWIVETE-SGKEWMRGQVVRFKHADTKTYLQAIESAKYQNPIPGQIEISGGKSKNEDTKWRTEEGIY 208          
BLAST of DY262595 vs. ExPASy Swiss-Prot
Match: SDF2_MOUSE (Stromal cell-derived factor 2 OS=Mus musculus GN=Sdf2 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.255e-35
Identity = 78/179 (43.58%), Postives = 109/179 (60.89%), Query Frame = 1
Query:  343 ITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTE 879
            +T G+V+KL++ +   RLHSH+V YGSGSGQQSVTG   VDD+NSYW ++       ++G  IK G  IRL H+ T + LHSH   SP+SGN E+S FG E E D  D W V+   +G  W +D  +R +H  T   L    ++Y R   GQ+EV G+ +   +N W A EG+++  +E
Sbjct:   24 VTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYWRIRGKTATVCERGTPIKCGQPIRLTHINTGRNLHSHHFTSPLSGNQEVSAFGEEGEGDYLDDWTVLC--NGPYWVRDGEVRFKHSSTDVLLSVTGEQYGRPISGQKEVHGMAQPSQNNYWKAMEGIFMKPSE 200          
BLAST of DY262595 vs. ExPASy Swiss-Prot
Match: SDF2_HUMAN (Stromal cell-derived factor 2 OS=Homo sapiens GN=SDF2 PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 2.141e-35
Identity = 78/179 (43.58%), Postives = 109/179 (60.89%), Query Frame = 1
Query:  343 ITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTE 879
            +T G+V+KL++ +   RLHSH+V YGSGSGQQSVTG   VDD+NSYW ++       ++G  IK G  IRL H+ T + LHSH   SP+SGN E+S FG E E D  D W V+   +G  W +D  +R +H  T   L    ++Y R   GQ+EV G+ +   +N W A EG+++  +E
Sbjct:   24 VTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYWRIRGKSATVCERGTPIKCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSAFGEEGEGDYLDDWTVLC--NGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMAQPSQNNYWKAMEGIFMKPSE 200          
BLAST of DY262595 vs. ExPASy Swiss-Prot
Match: SDF2_BOVIN (Stromal cell-derived factor 2 OS=Bos taurus GN=SDF2 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 3.652e-35
Identity = 77/179 (43.02%), Postives = 109/179 (60.89%), Query Frame = 1
Query:  343 ITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTE 879
            +T G+V+KL++ +   RLHSH+V YGSGSGQQSVTG   VDD+NSYW ++       ++G  I+ G  IRL H+ T + LHSH   SP+SGN E+S FG E E D  D W V+   +G  W +D  +R +H  T   L    ++Y R   GQ+EV G+ +   +N W A EG+++  +E
Sbjct:   24 VTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSAFGEEGEGDYLDDWTVLC--NGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMAQPSQNNYWKAMEGIFMKPSE 200          
BLAST of DY262595 vs. ExPASy Swiss-Prot
Match: SDF2L_MOUSE (Stromal cell-derived factor 2-like protein 1 OS=Mus musculus GN=Sdf2l1 PE=2 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 1.388e-34
Identity = 75/175 (42.86%), Postives = 104/175 (59.43%), Query Frame = 1
Query:  343 ITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYL 867
            +T G+VLKL++   K RLHSH++ YGSGSGQQSVTG  + DDANSYW ++        +G  ++ G  +RL H+ T K LH+H   SP+S N E+S FG + E D  D W V    SG+ W ++  +R QHV T  +L    ++Y     GQ EV G+    A N W A EG+++
Sbjct:   36 VTCGSVLKLLNTHHKVRLHSHDIKYGSGSGQQSVTGVEESDDANSYWRIRGGSEGGCPRGLPVRCGQAVRLTHVLTGKNLHTHHFPSPLSNNQEVSAFGEDGEGDDLDLWTVRC--SGQHWEREASVRFQHVGTSVFLSVTGEQYGNPIRGQHEVHGMPSANAHNTWKAMEGIFI 208          
BLAST of DY262595 vs. ExPASy Swiss-Prot
Match: SDF2L_HUMAN (Stromal cell-derived factor 2-like protein 1 OS=Homo sapiens GN=SDF2L1 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 1.175e-33
Identity = 73/175 (41.71%), Postives = 102/175 (58.29%), Query Frame = 1
Query:  343 ITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYL 867
            +T G+VLKL++   + RLHSH++ YGSGSGQQSVTG    DDANSYW ++        +G  ++ G  +RL H+ T K LH+H   SP+S N E+S FG + E D  D W V    SG+ W ++  +R QHV T  +L    ++Y     GQ EV G+      N W A EG+++
Sbjct:   36 VTCGSVLKLLNTHHRVRLHSHDIKYGSGSGQQSVTGVEASDDANSYWRIRGGSEGGCPRGSPVRCGQAVRLTHVLTGKNLHTHHFPSPLSNNQEVSAFGEDGEGDDLDLWTVRC--SGQHWEREAAVRFQHVGTSVFLSVTGEQYGSPIRGQHEVHGMPSANTHNTWKAMEGIFI 208          
BLAST of DY262595 vs. ExPASy Swiss-Prot
Match: SDF2L_BOVIN (Stromal cell-derived factor 2-like protein 1 OS=Bos taurus GN=SDF2L1 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.175e-33
Identity = 73/175 (41.71%), Postives = 103/175 (58.86%), Query Frame = 1
Query:  343 ITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYL 867
            +T G+VLKL + + + RLHSH++ YGSGSGQQSVTG    DDANSYW ++        +G  ++ G  +RL H+ T K LH+H   SP++ N E+S FG + E D  D W V    SG+ W ++  +R QHV T  +L    ++Y     GQ EV G+    A N W A EG+++
Sbjct:   36 VTCGSVLKLFNTQHRVRLHSHDIKYGSGSGQQSVTGVEASDDANSYWRIRGGTEGECPRGSPVRCGQAVRLTHVLTGKNLHTHHFPSPLTNNQEVSAFGEDGEGDDLDLWTVRC--SGQHWEREAAVRFQHVGTSVFLSVTGEQYGSPIRGQHEVHGMASASAHNKWKAMEGIFI 208          
BLAST of DY262595 vs. ExPASy Swiss-Prot
Match: PMT5_YEAST (Dolichyl-phosphate-mannose--protein mannosyltransferase 5 OS=Saccharomyces cerevisiae GN=PMT5 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.461e-15
Identity = 66/178 (37.08%), Postives = 89/178 (50.00%), Query Frame = 1
Query:  331 ETV-EITYGTVLKLMHEKTKFR-LHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDT----IKSGTIIRLQHMRTRKWLHSHLHASPISGNL----EISCFGGEE-ESDTGDYWRVMIEGSGKTWRQDQ--------RIRLQHVDTGGYLHSHPKKYQRIAGGQQEV 807
            ETV E+  G+ + L H  T    LHSH   Y +GS QQ VT +P +D  N+ WI++  L     +  T    +  GTII+L+ ++    LHSH H  P+S N     E+SC+G E  E D  D W + I+         Q        + RL+H  TG YL SHP+K      GQQEV
Sbjct:  318 ETVAEVAVGSAVSLNHVGTAGGYLHSHLHNYPAGSMQQQVTLYPHIDQ-NNKWIIE--LAEHPNENVTSFQNLTDGTIIKLRQLKNGCRLHSHDHKPPVSQNADWQKEVSCYGYEGFEGDINDDWIIEIDKKRSEPGPAQEHIRAIETKFRLKHYLTGCYLFSHPEKLPEWGFGQQEV 492          
BLAST of DY262595 vs. ExPASy Swiss-Prot
Match: PMT1_CANAL (Dolichyl-phosphate-mannose--protein mannosyltransferase 1 OS=Candida albicans GN=PMT1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 9.353e-15
Identity = 68/201 (33.83%), Postives = 101/201 (50.25%), Query Frame = 1
Query:  334 TVEITYGTVLKLMHEKTKFR-LHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDT-IKSGTIIRLQHMRTRKWLHSHLHASPIS---GNLEISCFGGEE-ESDTGDYWRVMI------EGSGKTWRQ--DQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVRE-KRADNVWL--AAEGVYLPVTESK 885
            T ++  G+V+ + H  T+   LHSHE  Y +GS QQ +T +P +D +N+ W+++P  G    +    + +G  IRL+H+ T + LHSH    P+S      E SC+G +    D  D W V I      +G  +T+ +  +   RL+H  TG YL S   K      GQQEV    + KRA   W     E   LP +E+K
Sbjct:  340 TEQVGLGSVVTIRHVDTQGGYLHSHEHFYQTGSKQQQITLYPHLD-SNNKWLIEPYNGTIHNETFVPLINGMKIRLKHINTGRRLHSHDEKPPVSERDWQKECSCYGYDGFAGDANDDWVVEIVNYRSQKGEAQTFVKAINTIFRLRHAMTGHYLFSSEVKLPEWGFGQQEVTSASQGKRALTHWYIETNENSILPPSEAK 539          
The following BLAST results are available for this feature:
BLAST of DY262595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
SDF2_ARATH2.575e-8979.89Stromal cell-derived factor 2-like protein OS=Arab... [more]
SDF2_DICDI1.385e-4250.28Stromal cell-derived factor 2-like protein OS=Dict... [more]
SDF2_MOUSE1.255e-3543.58Stromal cell-derived factor 2 OS=Mus musculus GN=S... [more]
SDF2_HUMAN2.141e-3543.58Stromal cell-derived factor 2 OS=Homo sapiens GN=S... [more]
SDF2_BOVIN3.652e-3543.02Stromal cell-derived factor 2 OS=Bos taurus GN=SDF... [more]
SDF2L_MOUSE1.388e-3442.86Stromal cell-derived factor 2-like protein 1 OS=Mu... [more]
SDF2L_HUMAN1.175e-3341.71Stromal cell-derived factor 2-like protein 1 OS=Ho... [more]
SDF2L_BOVIN1.175e-3341.71Stromal cell-derived factor 2-like protein 1 OS=Bo... [more]
PMT5_YEAST2.461e-1537.08Dolichyl-phosphate-mannose--protein mannosyltransf... [more]
PMT1_CANAL9.353e-1533.83Dolichyl-phosphate-mannose--protein mannosyltransf... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100BF08RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262595 ID=DY262595; Name=DY262595; organism=Citrus clementina; type=EST; length=1155bp
CCCAAAACCAAAACTCACCAAAGGCTCTCTCCGTGAACTCTGGATAGATC
CCCCGATCGCACCGTGGCTTCGTCCGGGGCGCCGCCGACGACGCAATCCC
TCACTCAAAGAAGAAAACAAACATCATCAACCGAAAACGCTAACCGCAGT
AGAGATTCGATAAGAGGTTCGCGAGCGAGACCTCAAAACGACTTTCCTTT
TTGGCAACAGAACTGGTTCTTAGGTTTGCTCTTTTTCATGGCAATGGTAT
TCTTCGCTCTCGCTGTCTTCCTCTTCCTCGGCCTCAATCTCGACGAATCT
TCTCCTTCCTCCGCCTCCGCCGCTTCCTCTGAAACTGTCGAGATTACTTA
TGGGACAGTTCTCAAGTTGATGCATGAGAAGACAAAATTCCGGCTGCATT
CACATGAAGTGCCATATGGTTCTGGCAGCGGGCAGCAATCTGTTACGGGT
TTCCCTGATGTTGATGATGCCAATAGCTATTGGATTGTTAAGCCTATTCT
AGGGGCATCTGCCAAACAAGGCGACACCATAAAGAGTGGGACTATTATCC
GGTTGCAGCACATGAGAACTAGAAAATGGCTGCACAGCCATTTGCATGCG
TCCCCAATTTCAGGAAACCTTGAGATTAGCTGTTTCGGAGGCGAAGAGGA
ATCTGATACTGGTGATTACTGGAGGGTTATGATTGAGGGTAGCGGAAAGA
CTTGGAGGCAAGATCAAAGGATTCGGCTTCAACACGTTGACACAGGTGGC
TACTTACATAGTCATCCCAAGAAATATCAGCGGATAGCTGGCGGACAGCA
AGAGGTCTGTGGCGTCAGAGAAAAGCGTGCTGATAATGTGTGGTTAGCCG
CTGAAGGTGTATACCTCCCTGTTACTGAGAGCAAGTAGATTTTGGTGACA
TTATGTGAAAGTACCTGTAAAAACAGGTGCTTGGGTTTTGGAAATTTAGG
TGGCTGGTGGCTTGTTCTATAGATATACCTATTAGTTGTTGAAGTTCAAT
ATGAAGAGGGGAAAAAATAACTTCAGGGACTTGAAATTAAAGTTATTGGA
GGTAATTTGGGGGGGCAATTGGGGCTCTGGGGAACCCTCGGGGAAACATA
ACTTGCAGTTTGTTTGAAGAATTTTTAATTGAATAAAAAGCTGGTTTTTT
TTCCC
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