DY262609
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY262609 vs. ExPASy Swiss-Prot
Match: RU17_ARATH (U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana GN=RNU1 PE=1 SV=1) HSP 1 Score: 381.719 bits (979), Expect = 5.986e-106 Identity = 194/273 (71.06%), Postives = 218/273 (79.85%), Query Frame = 3 Query: 138 MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRAPLEYKPPPEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLXGGLGTTRVEGKK*TEIFWKGARPFRGQSRSAEP-RIRKDRHGDRD 953 MGD D F+RN NAAVQAR K QNRANVLQLKL+GQSHPTGLT NLLKLFEPR PLEYKPPPEKRKCPP TGMAQFVS+FAEPGDP YAPP + E P ++R RIH YDP+NDPN +GDPYKTLFV+RL+YE++ESKIKREFESYGPIKRV LVTD+ TNKP+GYAFIEYMHTRDMKAAYKQADG+K+DGRRVLVDVERGRTVPNWRPRRL GGLGT+RV G + EI + +P S+S EP R R++R R+ Sbjct: 1 MGDSGDPFLRNPNAAVQARAKVQNRANVLQLKLMGQSHPTGLTNNLLKLFEPRPPLEYKPPPEKRKCPPYTGMAQFVSNFAEPGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAEDLKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGGGE--EIVGE-QQPQGRTSQSEEPSRPREEREKSRE 270 HSP 2 Score: 25.7942 bits (55), Expect = 5.986e-106 Identity = 10/18 (55.56%), Postives = 13/18 (72.22%), Query Frame = 1 Query: 1006 SRELSHDRPRNRDHKREK 1059 SRELSH++PR R R + Sbjct: 278 SRELSHEQPRERSRDRPR 295
BLAST of DY262609 vs. ExPASy Swiss-Prot
Match: RU17_MOUSE (U1 small nuclear ribonucleoprotein 70 kDa OS=Mus musculus GN=Snrnp70 PE=1 SV=2) HSP 1 Score: 216.468 bits (550), Expect = 2.850e-55 Identity = 112/202 (55.45%), Postives = 131/202 (64.85%), Query Frame = 3 Query: 261 LTANLLKLFEPRAPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLXGGLGTTRVEG 851 L NLL LF PR P+ Y PP EK P G+A ++ F +P D APP +AET ER R +DPHNDPN GD +KTLFVAR++Y+TTESK++REFE YGPIKR+ +V K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERGRTV WRPRRL GGLG TR G Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGG 203
BLAST of DY262609 vs. ExPASy Swiss-Prot
Match: RU17_HUMAN (U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens GN=SNRNP70 PE=1 SV=2) HSP 1 Score: 216.468 bits (550), Expect = 2.850e-55 Identity = 112/202 (55.45%), Postives = 131/202 (64.85%), Query Frame = 3 Query: 261 LTANLLKLFEPRAPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLXGGLGTTRVEG 851 L NLL LF PR P+ Y PP EK P G+A ++ F +P D APP +AET ER R +DPHNDPN GD +KTLFVAR++Y+TTESK++REFE YGPIKR+ +V K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERGRTV WRPRRL GGLG TR G Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGG 203
BLAST of DY262609 vs. ExPASy Swiss-Prot
Match: RU17_BOVIN (U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus GN=SNRNP70 PE=2 SV=1) HSP 1 Score: 216.468 bits (550), Expect = 2.850e-55 Identity = 112/202 (55.45%), Postives = 131/202 (64.85%), Query Frame = 3 Query: 261 LTANLLKLFEPRAPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLXGGLGTTRVEG 851 L NLL LF PR P+ Y PP EK P G+A ++ F +P D APP +AET ER R +DPHNDPN GD +KTLFVAR++Y+TTESK++REFE YGPIKR+ +V K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERGRTV WRPRRL GGLG TR G Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGG 203
BLAST of DY262609 vs. ExPASy Swiss-Prot
Match: RU17_XENTR (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis GN=snrnp70 PE=2 SV=1) HSP 1 Score: 213.386 bits (542), Expect = 2.413e-54 Identity = 111/202 (54.95%), Postives = 131/202 (64.85%), Query Frame = 3 Query: 261 LTANLLKLFEPRAPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLXGGLGTTRVEG 851 L NLL LF PR P+ Y PP EK P G+A ++ F +P D APP +AET ER R +DPHND N GD +KTLFVAR++Y+TTESK++REFE YGPIKR+ +V +K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERGRTV WRPRRL GGLG TR G Sbjct: 5 LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAETREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGG 203
BLAST of DY262609 vs. ExPASy Swiss-Prot
Match: RU17_XENLA (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus laevis GN=snrnp70 PE=2 SV=1) HSP 1 Score: 207.223 bits (526), Expect = 1.729e-52 Identity = 111/205 (54.15%), Postives = 131/205 (63.90%), Query Frame = 3 Query: 261 LTANLLKLFEPRAPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETN---KPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLXGGLGTTRVEG 851 L NLL LF PR P+ Y PP EK P G+A ++ F +P D APP +AET ER R +DPHND N GD +KTLFVAR++Y+TTESK++REFE YGPIKR+ +V +K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERGRTV WRPRRL GGLG TR G Sbjct: 5 LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAETREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGG 206
BLAST of DY262609 vs. ExPASy Swiss-Prot
Match: RU17_DROME (U1 small nuclear ribonucleoprotein 70 kDa OS=Drosophila melanogaster GN=snRNP70K PE=1 SV=2) HSP 1 Score: 185.652 bits (470), Expect = 5.388e-46 Identity = 105/233 (45.06%), Postives = 138/233 (59.23%), Query Frame = 3 Query: 261 LTANLLKLFEPRAPLEYKPP----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLXGGLGTTRVEGKK*TEIFWKGARP-FRGQSRSAEPRIRKDRHG 944 L NLL LF R P+ + PP P ++K G+A+F++ F +P D VE + +ERR R +DP N + DP++TLF+AR++Y+T+ESK++REFE YGPIK++ L+ D+E+ KP+GYAFIEY H RDM AAYK ADG+K+D +RVLVDVER RTV W PRRL GGLG TR G I G R + R R R+DR G Sbjct: 5 LPPNLLALFAAREPIPFMPPVDKLPHEKKSRGYLGVAKFMADFEDPKDTPLPKTVETRQERLERRRR---EKAEQVAYKLEREIALWDPTEIKNATEDPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGKKIDSKRVLVDVERARTVKGWLPRRLGGGLGGTR-RGGNDVNIKHSGREDNERERERYRLEREREDREG 233
BLAST of DY262609 vs. ExPASy Swiss-Prot
Match: RU17_SCHPO (U1 small nuclear ribonucleoprotein 70 kDa homolog OS=Schizosaccharomyces pombe GN=usp101 PE=1 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 2.767e-42 Identity = 98/223 (43.95%), Postives = 134/223 (60.09%), Query Frame = 3 Query: 261 LTANLLKLFEPRAPLEYKPP----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLXGGLG---TTRVEGKK*TEIFWKGARPFRGQSR 908 L A LL LF PR PL Y PP PEKR P ++G+A+++ +A+ D Y P E+ E+R R+ +DP +D +V GDPYKT+F++RLSY+T ES I+REF YGPI+R+R+V +K T K GYAF+ + RD+K AYK + G L+GRR++VDVERGRTV W PR+L GGLG T+ ++ ++G FRG R Sbjct: 5 LPAPLLALFAPRPPLRYLPPMDVPPEKRSTPRVSGIAKYLK-YAQSHDQQYHP----TESLEEKRLRLRDEKQKQQRERLRSMIKVWDPDHDRHVIGDPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAGLMLNGRRIVVDVERGRTVKGWLPRKLGGGLGGRHYTKERPRRERGSRFRGDSGFRGGYR 222
BLAST of DY262609 vs. ExPASy Swiss-Prot
Match: RU17_DICDI (U1 small nuclear ribonucleoprotein 70 kDa OS=Dictyostelium discoideum GN=snrnp70 PE=3 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 2.767e-42 Identity = 92/233 (39.48%), Postives = 130/233 (55.79%), Query Frame = 3 Query: 261 LTANLLKLFEPRAPLEYKPPPEKRKCPPLTGMAQFVSHFAEPG--DPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKET-NKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLXGGLGTTRVEGKK*TEIFWKGARPFRGQSRSAEPRIRKDRHGDR 950 L NL +F PR P + PPP PP TG+ ++S F +P +P +E E E+R + +DP+++ +GDPYKT+FV+R+SY+TT+ K++ EF +GPIK + LV D K GYAFIE+ RDMKAAYKQADG K+D RR++VD+ERGR + NW+PR+ GGLG TR G + F G + + E K++ +R Sbjct: 4 LPPNLKIMFNPRHPPPFLPPPPPSNLPPYTGLRDYLSIFTDPSNEEPFKKEHIENLE---EKREKKRKLKISENDERISKSLKAWDPYSNSETTGDPYKTIFVSRISYKTTQQKLEFEFGQFGPIKSLFLVKDSNNPEKHTGYAFIEFERERDMKAAYKQADGMKIDDRRIVVDIERGRVIKNWKPRKFGGGLGNTRAGGVDVNQTF-SGREMSESREKEKEREKEKEKEKER 232
BLAST of DY262609 vs. ExPASy Swiss-Prot
Match: U1SBP_DANRE (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Danio rerio GN=snrnp35 PE=2 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 1.291e-23 Identity = 70/154 (45.45%), Postives = 90/154 (58.44%), Query Frame = 3 Query: 507 YDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLXGGLGTTRVEGKK*TEIFWKGARPFR-----GQSRSAEPRIRK-DRHGDR 950 Y P+ V GDP TLFVARL+ +TTE K++ F +G I+R+RLV D T + YAFIEY R +K A++ A+ LD +LVDVE+ RT+P WRPRRL GG G + G+ F RPFR R AEPR R+ +R DR Sbjct: 38 YKPNR--GVCGDPDLTLFVARLNPQTTEEKLRDVFSKFGDIRRLRLVRDVVTGFSKRYAFIEYKEERSLKRAWRDANKLILDQYELLVDVEQERTLPGWRPRRLGGGQGGQKESGQL---RFGGRDRPFRKPINLSTRRPAEPRGRETERERDR 186 The following BLAST results are available for this feature:
BLAST of DY262609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 21
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Sequences
The
following sequences are available for this feature:
EST sequence >DY262609 ID=DY262609; Name=DY262609; organism=Citrus clementina; type=EST; length=1301bpback to top |