DY262609

Overview
NameDY262609
Unique NameDY262609
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1301
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262609 vs. ExPASy Swiss-Prot
Match: RU17_ARATH (U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana GN=RNU1 PE=1 SV=1)

HSP 1 Score: 381.719 bits (979), Expect = 5.986e-106
Identity = 194/273 (71.06%), Postives = 218/273 (79.85%), Query Frame = 3
Query:  138 MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRAPLEYKPPPEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLXGGLGTTRVEGKK*TEIFWKGARPFRGQSRSAEP-RIRKDRHGDRD 953
            MGD  D F+RN NAAVQAR K QNRANVLQLKL+GQSHPTGLT NLLKLFEPR PLEYKPPPEKRKCPP TGMAQFVS+FAEPGDP YAPP  + E P ++R RIH                 YDP+NDPN +GDPYKTLFV+RL+YE++ESKIKREFESYGPIKRV LVTD+ TNKP+GYAFIEYMHTRDMKAAYKQADG+K+DGRRVLVDVERGRTVPNWRPRRL GGLGT+RV G +  EI  +  +P    S+S EP R R++R   R+
Sbjct:    1 MGDSGDPFLRNPNAAVQARAKVQNRANVLQLKLMGQSHPTGLTNNLLKLFEPRPPLEYKPPPEKRKCPPYTGMAQFVSNFAEPGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAEDLKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGGGE--EIVGE-QQPQGRTSQSEEPSRPREEREKSRE 270          

HSP 2 Score: 25.7942 bits (55), Expect = 5.986e-106
Identity = 10/18 (55.56%), Postives = 13/18 (72.22%), Query Frame = 1
Query: 1006 SRELSHDRPRNRDHKREK 1059
            SRELSH++PR R   R +
Sbjct:  278 SRELSHEQPRERSRDRPR 295          
BLAST of DY262609 vs. ExPASy Swiss-Prot
Match: RU17_MOUSE (U1 small nuclear ribonucleoprotein 70 kDa OS=Mus musculus GN=Snrnp70 PE=1 SV=2)

HSP 1 Score: 216.468 bits (550), Expect = 2.850e-55
Identity = 112/202 (55.45%), Postives = 131/202 (64.85%), Query Frame = 3
Query:  261 LTANLLKLFEPRAPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLXGGLGTTRVEG 851
            L  NLL LF PR P+ Y PP      EK    P  G+A ++  F +P D   APP  +AET  ER  R                   +DPHNDPN  GD +KTLFVAR++Y+TTESK++REFE YGPIKR+ +V  K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERGRTV  WRPRRL GGLG TR  G
Sbjct:    5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGG 203          
BLAST of DY262609 vs. ExPASy Swiss-Prot
Match: RU17_HUMAN (U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens GN=SNRNP70 PE=1 SV=2)

HSP 1 Score: 216.468 bits (550), Expect = 2.850e-55
Identity = 112/202 (55.45%), Postives = 131/202 (64.85%), Query Frame = 3
Query:  261 LTANLLKLFEPRAPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLXGGLGTTRVEG 851
            L  NLL LF PR P+ Y PP      EK    P  G+A ++  F +P D   APP  +AET  ER  R                   +DPHNDPN  GD +KTLFVAR++Y+TTESK++REFE YGPIKR+ +V  K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERGRTV  WRPRRL GGLG TR  G
Sbjct:    5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGG 203          
BLAST of DY262609 vs. ExPASy Swiss-Prot
Match: RU17_BOVIN (U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus GN=SNRNP70 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 2.850e-55
Identity = 112/202 (55.45%), Postives = 131/202 (64.85%), Query Frame = 3
Query:  261 LTANLLKLFEPRAPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLXGGLGTTRVEG 851
            L  NLL LF PR P+ Y PP      EK    P  G+A ++  F +P D   APP  +AET  ER  R                   +DPHNDPN  GD +KTLFVAR++Y+TTESK++REFE YGPIKR+ +V  K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERGRTV  WRPRRL GGLG TR  G
Sbjct:    5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGG 203          
BLAST of DY262609 vs. ExPASy Swiss-Prot
Match: RU17_XENTR (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis GN=snrnp70 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 2.413e-54
Identity = 111/202 (54.95%), Postives = 131/202 (64.85%), Query Frame = 3
Query:  261 LTANLLKLFEPRAPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLXGGLGTTRVEG 851
            L  NLL LF PR P+ Y PP      EK    P  G+A ++  F +P D   APP  +AET  ER  R                   +DPHND N  GD +KTLFVAR++Y+TTESK++REFE YGPIKR+ +V +K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERGRTV  WRPRRL GGLG TR  G
Sbjct:    5 LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAETREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGG 203          
BLAST of DY262609 vs. ExPASy Swiss-Prot
Match: RU17_XENLA (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus laevis GN=snrnp70 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.729e-52
Identity = 111/205 (54.15%), Postives = 131/205 (63.90%), Query Frame = 3
Query:  261 LTANLLKLFEPRAPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETN---KPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLXGGLGTTRVEG 851
            L  NLL LF PR P+ Y PP      EK    P  G+A ++  F +P D   APP  +AET  ER  R                   +DPHND N  GD +KTLFVAR++Y+TTESK++REFE YGPIKR+ +V +K +    KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERGRTV  WRPRRL GGLG TR  G
Sbjct:    5 LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAETREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGG 206          
BLAST of DY262609 vs. ExPASy Swiss-Prot
Match: RU17_DROME (U1 small nuclear ribonucleoprotein 70 kDa OS=Drosophila melanogaster GN=snRNP70K PE=1 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 5.388e-46
Identity = 105/233 (45.06%), Postives = 138/233 (59.23%), Query Frame = 3
Query:  261 LTANLLKLFEPRAPLEYKPP----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLXGGLGTTRVEGKK*TEIFWKGARP-FRGQSRSAEPRIRKDRHG 944
            L  NLL LF  R P+ + PP    P ++K     G+A+F++ F +P D      VE  +  +ERR R                   +DP    N + DP++TLF+AR++Y+T+ESK++REFE YGPIK++ L+ D+E+ KP+GYAFIEY H RDM AAYK ADG+K+D +RVLVDVER RTV  W PRRL GGLG TR  G     I   G     R + R    R R+DR G
Sbjct:    5 LPPNLLALFAAREPIPFMPPVDKLPHEKKSRGYLGVAKFMADFEDPKDTPLPKTVETRQERLERRRR---EKAEQVAYKLEREIALWDPTEIKNATEDPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGKKIDSKRVLVDVERARTVKGWLPRRLGGGLGGTR-RGGNDVNIKHSGREDNERERERYRLEREREDREG 233          
BLAST of DY262609 vs. ExPASy Swiss-Prot
Match: RU17_SCHPO (U1 small nuclear ribonucleoprotein 70 kDa homolog OS=Schizosaccharomyces pombe GN=usp101 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 2.767e-42
Identity = 98/223 (43.95%), Postives = 134/223 (60.09%), Query Frame = 3
Query:  261 LTANLLKLFEPRAPLEYKPP----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLXGGLG---TTRVEGKK*TEIFWKGARPFRGQSR 908
            L A LL LF PR PL Y PP    PEKR  P ++G+A+++  +A+  D  Y P     E+  E+R R+                  +DP +D +V GDPYKT+F++RLSY+T ES I+REF  YGPI+R+R+V +K T K  GYAF+ +   RD+K AYK + G  L+GRR++VDVERGRTV  W PR+L GGLG    T+   ++     ++G   FRG  R
Sbjct:    5 LPAPLLALFAPRPPLRYLPPMDVPPEKRSTPRVSGIAKYLK-YAQSHDQQYHP----TESLEEKRLRLRDEKQKQQRERLRSMIKVWDPDHDRHVIGDPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAGLMLNGRRIVVDVERGRTVKGWLPRKLGGGLGGRHYTKERPRRERGSRFRGDSGFRGGYR 222          
BLAST of DY262609 vs. ExPASy Swiss-Prot
Match: RU17_DICDI (U1 small nuclear ribonucleoprotein 70 kDa OS=Dictyostelium discoideum GN=snrnp70 PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 2.767e-42
Identity = 92/233 (39.48%), Postives = 130/233 (55.79%), Query Frame = 3
Query:  261 LTANLLKLFEPRAPLEYKPPPEKRKCPPLTGMAQFVSHFAEPG--DPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKET-NKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLXGGLGTTRVEGKK*TEIFWKGARPFRGQSRSAEPRIRKDRHGDR 950
            L  NL  +F PR P  + PPP     PP TG+  ++S F +P   +P     +E  E   E+R +                   +DP+++   +GDPYKT+FV+R+SY+TT+ K++ EF  +GPIK + LV D     K  GYAFIE+   RDMKAAYKQADG K+D RR++VD+ERGR + NW+PR+  GGLG TR  G    + F  G      + +  E    K++  +R
Sbjct:    4 LPPNLKIMFNPRHPPPFLPPPPPSNLPPYTGLRDYLSIFTDPSNEEPFKKEHIENLE---EKREKKRKLKISENDERISKSLKAWDPYSNSETTGDPYKTIFVSRISYKTTQQKLEFEFGQFGPIKSLFLVKDSNNPEKHTGYAFIEFERERDMKAAYKQADGMKIDDRRIVVDIERGRVIKNWKPRKFGGGLGNTRAGGVDVNQTF-SGREMSESREKEKEREKEKEKEKER 232          
BLAST of DY262609 vs. ExPASy Swiss-Prot
Match: U1SBP_DANRE (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Danio rerio GN=snrnp35 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.291e-23
Identity = 70/154 (45.45%), Postives = 90/154 (58.44%), Query Frame = 3
Query:  507 YDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLXGGLGTTRVEGKK*TEIFWKGARPFR-----GQSRSAEPRIRK-DRHGDR 950
            Y P+    V GDP  TLFVARL+ +TTE K++  F  +G I+R+RLV D  T   + YAFIEY   R +K A++ A+   LD   +LVDVE+ RT+P WRPRRL GG G  +  G+     F    RPFR        R AEPR R+ +R  DR
Sbjct:   38 YKPNR--GVCGDPDLTLFVARLNPQTTEEKLRDVFSKFGDIRRLRLVRDVVTGFSKRYAFIEYKEERSLKRAWRDANKLILDQYELLVDVEQERTLPGWRPRRLGGGQGGQKESGQL---RFGGRDRPFRKPINLSTRRPAEPRGRETERERDR 186          
The following BLAST results are available for this feature:
BLAST of DY262609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RU17_ARATH5.986e-10671.06U1 small nuclear ribonucleoprotein 70 kDa OS=Arabi... [more]
RU17_MOUSE2.850e-5555.45U1 small nuclear ribonucleoprotein 70 kDa OS=Mus m... [more]
RU17_HUMAN2.850e-5555.45U1 small nuclear ribonucleoprotein 70 kDa OS=Homo ... [more]
RU17_BOVIN2.850e-5555.45U1 small nuclear ribonucleoprotein 70 kDa OS=Bos t... [more]
RU17_XENTR2.413e-5454.95U1 small nuclear ribonucleoprotein 70 kDa OS=Xenop... [more]
RU17_XENLA1.729e-5254.15U1 small nuclear ribonucleoprotein 70 kDa OS=Xenop... [more]
RU17_DROME5.388e-4645.06U1 small nuclear ribonucleoprotein 70 kDa OS=Droso... [more]
RU17_SCHPO2.767e-4243.95U1 small nuclear ribonucleoprotein 70 kDa homolog ... [more]
RU17_DICDI2.767e-4239.48U1 small nuclear ribonucleoprotein 70 kDa OS=Dicty... [more]
U1SBP_DANRE1.291e-2345.45U11/U12 small nuclear ribonucleoprotein 35 kDa pro... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100BG10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262609 ID=DY262609; Name=DY262609; organism=Citrus clementina; type=EST; length=1301bp
TAAAAATCCGAACTACCAAAACCCGATCCAAATTCAACAAATACCCATCT
TGATGCTATTATCTTCTTAAGAACCCTGGTCACCAAACCCTAGCTTGTAA
CCAGAACCCTAGTTGGCACCCGATCTCCTCTGTAAACATGGGAGACTACA
ACGATGCATTCATGCGTAACCAAAACGCCGCCGTTCAGGCCCGTACTAAG
GCCCAGAACCGCGCCAACGTCCTTCAGCTTAAGCTGATTGGGCAAAGCCA
TCCTACCGGTTTAACAGCCAATCTCTTGAAGCTCTTTGAGCCTCGAGCTC
CGCTTGAGTATAAACCACCTCCAGAGAAAAGAAAATGCCCGCCACTGACA
GGAATGGCGCAGTTTGTTAGTCACTTTGCTGAACCTGGAGATCCTCTGTA
TGCTCCACCTGTAGAGAAGGCTGAGACTCCTGTAGAAAGAAGGGCTAGAA
TCCACAAGTTACGACTAGAGAAGGGTGCAGAAAAGGCTGCTGAAGAACTT
AAGAAATATGATCCTCATAATGACCCAAATGTGTCAGGAGATCCATACAA
GACACTGTTTGTTGCTAGGCTGAGTTATGAGACAACTGAGAGTAAAATCA
AAAGGGAGTTTGAGTCTTATGGGCCAATTAAACGGGTTCGGTTGGTTACT
GATAAAGAGACAAATAAACCTAGAGGTTATGCTTTCATCGAGTACATGCA
CACTCGGGATATGAAAGCTGCATATAAACAAGCTGATGGGAGGAAGCTTG
ATGGCAGAAGGGTGCTTGTTGATGTTGAGCGTGGTCGAACAGTCCCTAAT
TGGCGTCCTCGCAGGCTANGCGGTGGACTTGGAACAACCAGGGTGGAGGG
GAAGAAGTAAACAGAGATATTCTGGAAGGGAGCAAGACCCTTCAGAGGAC
AATCTCGGTCTGCAGAGCCTAGGATACGAAAGGATCGACATGGTGACCGG
GATATGAAAAGATCCGTGAAAAGGGGGAGGGAAAAAGAAGAAGGACGGGA
AAAAGTCCCGTGAACTCTCCCATGACAGACCAAGAAATCGTGATCATAAA
AGAGAAAAAACCCCCTAAAAATCGTGAACGAAATAAAAAACCAAAAAAAG
GAAAAAAAACCGAGGGGGCTTAACGTGACCGGGAACCAAAAACCGGGTTT
TGGATTCCCGGCCCGGGGATCGGGGGTTCGGAATTAGAAAAGTGAAAAAA
AAAAAAAAAACCCGGGAAAAGGGGAGGGGGGTTTTTTTAATTTCCCCCTC
CGTAAAAAGGGGGAAGAGGGAAAAAAGAAAAAATTTAAAAAAATAGTTGT
G
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