DY262611

Overview
NameDY262611
Unique NameDY262611
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1187
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262611_ssr57 microsatellite DY262611_ssr57:57..92. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY262611 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 5.122e-32
Identity = 79/240 (32.92%), Postives = 127/240 (52.92%), Query Frame = 2
Query:  236 ESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILLGMASALETLCGQAFGAKQYHMLGIYLQRSWIVLTICAXXXXXXXXXXXXXXVALGQEENIAEVAGTISFMLIPVLFAFIISFTCQMYLQAQSRNMIISYLAACXXXXXXXXXXXXTMKLNFGLPGALGSTILAYW-IPNLGQLLFVICGGCPQTWKGFSFAAFKDLWPVIKFSLSSGVMLCLE 952
            ESK LW ++  +I     ++ L+ V+  F GH+G+ QLA  S+    +   A GI+LGMASA++T+CGQA+GA+QY  +GI  QR+ ++    A                +GQ   IA      +  +IP ++AF ++   Q +LQAQ+    ++Y++              T  L+FGL GA      ++W +  +  +  ++   C +TW GFS  AF+ +WP  K +++S VMLCLE
Sbjct:   51 ESKLLWTLSGASIVVSVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCGQAYGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIPQIYAFALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSFSWWLLVAVNGMYILMSPNCKETWTGFSTRAFRGIWPYFKLTVASAVMLCLE 290          
BLAST of DY262611 vs. ExPASy Swiss-Prot
Match: S47A1_XENTR (Multidrug and toxin extrusion protein 1 OS=Xenopus tropicalis GN=slc47a1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.940e-16
Identity = 59/247 (23.89%), Postives = 114/247 (46.15%), Query Frame = 2
Query:  224 KLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILLGMASALETLCGQAFGAKQYHMLGIYLQRSWIVLTICAXXXXXXXXXXXXXXVALGQEENIAEVAGTISFMLIPVLFAFIISFTCQMYLQAQS---RNMIISYLAACXXXXXXXXXXXXTMKLNFGLPGALGSTILAYWIPNLGQLLFVICGGC-PQTWKGFSFAAFKDLWPVIKFSLSSGVMLCLE 952
            ++W E+++L  +AAPA  ++   F +++VS  F GH+G  +L A SL  T++      +  G+A A +TL  Q FG     ++GI LQR  ++L +                +   Q+  ++++      + +P L A  +      YLQ Q      ++  ++A                 L  G+ G+  +  ++ +I  +   L+++       TW G+S A F++    I+ +++S +MLC+E
Sbjct:   44 EVWQEAQQLLALAAPAFLSQLMIFLISIVSSIFCGHLGKVELDAVSLAITIINITGVAVGTGLAGACDTLISQTFGGSNLKLVGIILQRGILILLLFCFPCWALLINTESILLLFRQDPEVSKLTQIYVLIFLPALPAAFLYQLLAKYLQNQGIIYPQVLTGFIA---NIFNALFNYILLYVLGLGVMGSACANTVSQFIQMILLFLYIVWRRLYADTWGGWSQACFEEWGAFIRLAVASMLMLCIE 287          
BLAST of DY262611 vs. ExPASy Swiss-Prot
Match: YJ2D_SCHPO (Uncharacterized transporter C4B3.13 OS=Schizosaccharomyces pombe GN=SPCC4B3.13 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.335e-15
Identity = 69/278 (24.82%), Postives = 116/278 (41.73%), Query Frame = 2
Query:  143 RMVGEIKEKLLGNTEEND-----VDGQVKFRQKLWVESKKLWI-VAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILLGMASALETLCGQAFGAKQYHMLGIYLQRSWIVLTICAXXXXXXXXXXXXXXVALGQEENIAEVAGTISFMLIPVLFAFIISFTCQMYLQAQSRNMIISYLAACXXXXXXXXXXXXTMK--LNFGLPGALGSTILAYWIPNLGQLLFVICGGCPQTWKGFSFAAFKDLWPVIKFSLSSGVMLCLE 952
            R   ++    L  TEEN+     +  Q  F  K W +   L I  A P + T    +G  V +   +GH+G T+LAA SL        A  I  G+ SAL+T+  Q+FG+  Y M+G++LQR   +L +                + L Q+      A     +++    A+ +    + +LQ Q     ++Y+ A                  + FG  GA  +  L  W      +++++     Q W GFS  A K+  P+ + ++   +M+C E
Sbjct:   59 RPATDVSYGALEETEENESIASGLSVQEDFNSKAWWKELTLLIKFATPVVLTSLLQYGEVVTTVFSLGHLGKTELAAASLSNMTATITAFAIYQGIVSALDTVGTQSFGSGNYEMVGLHLQRILAILLLIQFPIFLIWWKIEGILLFLRQDPLTCMFAAKYMRVMMLASPAYALFEALKRFLQVQGIFHPVTYILAIVVPINIFLNYLFVWSPWVGFGFLGAPVAVALTLWSACAVLIIYIMKVNGRQAWGGFSREALKNWGPLCRLAVPGVIMICSE 336          
BLAST of DY262611 vs. ExPASy Swiss-Prot
Match: YL47_SCHPO (Uncharacterized transporter C323.07c OS=Schizosaccharomyces pombe GN=SPAC323.07c PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 5.689e-15
Identity = 58/212 (27.36%), Postives = 92/212 (43.40%), Query Frame = 2
Query:  323 IGHIGATQLAAYSLVFTVLLRFANGILLGMASALETLCGQAFGAKQYHMLGIYLQRSWIVLTICAXXXXXXXXXXXXXXVALGQEENIAEVAGTISFMLIPVLFAFIISFTCQMYLQAQSRNMIISYLA--ACXXXXXXXXXXXXTMKLNFGLPGALGSTILAYWIPNLGQLLFVICGGCPQTWKGFSFAAFKDLWPVIKFSLSSGVMLCLE 952
            +GH+G   LAA SL        A  I  G+ S+L+TL  QAFGA + + + IYLQR  ++L +                + L Q+  +A + G    + I     + +    + YLQAQ     I+Y+   A                + FG  GA  +    +W  ++  +L++     P  W GFS  A K+L P++ FS    +M+  E
Sbjct:  119 LGHLGKEYLAASSLSTMTAAISAFSIFQGVISSLDTLATQAFGANKPYNVAIYLQRCLLILAVLHIPVALIWLNLEHILIFLHQDPMVAHLCGRYMRVFILAAPGYAVFEALKRYLQAQGIFTPITYVLCFAAPLNILLNYLLVWHPTIGFGFLGAPVAVATTFWFQSICLILYICFSSTPIPWPGFSRQALKNLSPMLHFSFHGMLMIVTE 330          
BLAST of DY262611 vs. ExPASy Swiss-Prot
Match: S47A1_HUMAN (Multidrug and toxin extrusion protein 1 OS=Homo sapiens GN=SLC47A1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 4.816e-14
Identity = 55/240 (22.92%), Postives = 106/240 (44.17%), Query Frame = 2
Query:  236 ESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILLGMASALETLCGQAFGAKQYHMLGIYLQRSWIVLTICAXXXXXXXXXXXXXXVALGQEENIAEVAGTISFMLIPVLFAFIISFTCQMYLQAQSRNMIISYLAACXXXXXXXXXXXXTMKLNFGLPGALGSTILAYWIPNLGQLLFVICGGCPQ-TWKGFSFAAFKDLWPVIKFSLSSGVMLCLE 952
            E + L ++A PA   +   F ++ +S  F GH+G  +L A +L   V+      +  G++SA +TL  Q +G++    +G+ LQRS +VL +C               +   Q+ +++ +  T   + IP L A  +      YL  Q   +                      +L+ G+ G+  + +++ +   L   L+++     Q TW G+S    +D    ++ ++ S +MLC+E
Sbjct:   34 ELRALLVLAGPAFLVQLMVFLISFISSVFCGHLGKLELDAVTLAIAVINVTGVSVGFGLSSACDTLISQTYGSQNLKHVGVILQRSALVLLLCCFPCWALFLNTQHILLLFRQDPDVSRLTQTYVTIFIPALPATFLYMLQVKYLLNQGIVLPQIVTGVAANLVNALANYLFLHQLHLGVIGSALANLISQYTLALLLFLYILGKKLHQATWGGWSLECLQDWASFLRLAIPSMLMLCME 273          
BLAST of DY262611 vs. ExPASy Swiss-Prot
Match: S47A2_MOUSE (Multidrug and toxin extrusion protein 2 OS=Mus musculus GN=Slc47a2 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.830e-13
Identity = 59/242 (24.38%), Postives = 104/242 (42.98%), Query Frame = 2
Query:  236 ESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILLGMASALETLCGQAFGAKQYHMLGIYLQRSWIVLTICAXXXXXXXXXXXXXXVALGQEENIAEVAGTISFMLIPVLFAFIISFTCQMYLQAQSRNMIISYLAACXXXXXXXXXXXXTMKLNFGLPGALGSTILAYWIPNLGQLLFVICGGCP---QTWKGFSFAAFKDLWPVIKFSLSSGVMLCLE 952
            E+  L  +A P    +   F +++VS  F GH+G  +L A +L  +V+      +  G+ASA +TL  Q+FG K    +G+ LQR  ++L +C               + L Q+ ++A +A     + IP L A  +      YLQ+Q   M    +                  L+ G+ G+  +   + +   L  LLF+          TW G++   F++     + ++ S  M+C+E
Sbjct:   43 EAAALVALAGPVFLAQLMIFLISIVSSIFCGHLGKVELDAVTLAVSVVNVTGISVGTGLASACDTLMSQSFGGKNLKRVGVILQRGILILLLCCFPCWAIFLNTERLLLLLRQDPDVARLAQVYVMICIPALPAAFLFQLQTRYLQSQGIIMPQVIVGIAANVVNVGMNAFLLYALDLGVVGSAWANTTSQFF--LSALLFLYVWWKRIHIHTWGGWTRECFQEWSSYTRLAIPSMFMVCIE 282          
BLAST of DY262611 vs. ExPASy Swiss-Prot
Match: S47A2_RABIT (Multidrug and toxin extrusion protein 2 OS=Oryctolagus cuniculus GN=SLC47A2 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.122e-13
Identity = 52/242 (21.49%), Postives = 103/242 (42.56%), Query Frame = 2
Query:  230 WVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILLGMASALETLCGQAFGAKQYHMLGIYLQRSWIVLTICAXXXXXXXXXXXXXXVALGQEENIAEVAGTISFMLIPVLFAFIISFTCQMYLQAQSRNMIISYLAACXXXXXXXXXXXXTMKLNFGLPGALGSTILAYWIPNLGQLLFVICGGCP-QTWKGFSFAAFKDLWPVIKFSLSSGVMLCLE 952
            W E++ L++++ P    +  +F   VV   F GH+G  +LA+ +L    +      +  G++SA +TL  Q+FG+     +G+ LQR  ++L +C               +   Q+  ++ +    + + IP L A  +      YLQ Q                           LN G+ G+  +  ++ ++      L ++      +TW+G+S    +D  P +  ++ S +M+C+E
Sbjct:   57 WDEARALFVLSGPLFLFQVLNFLTYVVGTVFCGHLGKVELASVTLGVAFVNVCGVSVGAGLSSACDTLMSQSFGSPNKKHVGVILQRGSLILLLCCLPCWALFLNTQHILLLFRQDPAVSRLTQDYAMIFIPGLPAIFLYSLLAKYLQNQGIVWPQVLSGVVGNCVNGVANYALVSVLNLGVRGSAYANTISQFVQAAFLFLHIVLKKLHLETWEGWSSQCLRDWGPFLSLAIPSMLMMCVE 298          
BLAST of DY262611 vs. ExPASy Swiss-Prot
Match: S47A2_PONAB (Multidrug and toxin extrusion protein 2 OS=Pongo abelii GN=SLC47A2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.122e-13
Identity = 54/247 (21.86%), Postives = 104/247 (42.11%), Query Frame = 2
Query:  215 FRQKLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILLGMASALETLCGQAFGAKQYHMLGIYLQRSWIVLTICAXXXXXXXXXXXXXXVALGQEENIAEVAGTISFMLIPVLFAFIISFTCQMYLQAQSRNMIISYLAACXXXXXXXXXXXXTMKLNFGLPGALGSTILAYWIPNLGQLLFVICGGCP-QTWKGFSFAAFKDLWPVIKFSLSSGVMLCLE 952
            F  ++W     L+ ++ P    +  +F + +VS  F GH+G  +LA+ +L    +      + +G++SA +TL  Q+FG+     +G+ LQR  +VL +C               +   Q+  ++ +      + IP L    +      YLQ Q                           LN G+ G+  + I++ +   +  LL+++      +TW G+S    +D  P    ++ S +M+C+E
Sbjct:   27 FGTEMWT----LFALSGPLFLFQVLTFMIYIVSTVFCGHLGKVELASVTLAVAFVNVCGVSVGVGLSSACDTLMSQSFGSPNKKHVGVILQRGALVLLLCCLPCWALFLNTQHILLLFRQDPEVSRLTQDYVMIFIPGLPVIFLYNLLAKYLQNQKITWPQVLSGVVGNCVNGVANYALVSVLNLGVRGSAYANIISQFAQTVFLLLYIVLKKLHLETWAGWSSQCLQDWGPFFSLAVPSMLMICVE 269          
BLAST of DY262611 vs. ExPASy Swiss-Prot
Match: S47A1_PONAB (Multidrug and toxin extrusion protein 1 OS=Pongo abelii GN=SLC47A1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.122e-13
Identity = 61/243 (25.10%), Postives = 107/243 (44.03%), Query Frame = 2
Query:  236 ESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILLGMASALETLCGQAFGAKQYHMLGIYLQRSWIVLTICAXXXXXXXXXXXXXXVALGQEENIAEVAGTISFMLIPVLFAFIISFTCQMYLQAQSRNM--IISYLAACXXXXXXXXXXXXTMKLNFGLPGALGSTILAYWIPNLGQLLFVICGGC--PQTWKGFSFAAFKDLWPVIKFSLSSGVMLCLE 952
            E + L ++A PA   +   F ++ +S  F GH+G  +L A +L   V+      +  G++SA +TL  Q +G++    +G+ LQRS ++L +C               +   Q+ +++ +  T   + IP L A  +      YL  Q   +  I++ +AA              + L   +  AL + I  Y +  L  L F I G      TW G+S    +D    +  ++ S +MLC+E
Sbjct:   34 ELRALLVLAGPAFLVQLMVFLISFISSVFCGHLGKLELDAVTLAIAVINVTGVSVGFGLSSACDTLISQTYGSQNLKHVGVILQRSALILLLCCFPCWALFLNTQHILLLFRQDPDVSRLTQTYVTIFIPALPATFLYMLQVKYLLNQGIVLPQIVTGVAANLVNALANYLFLHQLHLG-AIGSALANLISQYTLALL--LFFYILGKKLHQATWGGWSLECLQDWASFLHLAVPSMLMLCME 273          
BLAST of DY262611 vs. ExPASy Swiss-Prot
Match: S47A1_MOUSE (Multidrug and toxin extrusion protein 1 OS=Mus musculus GN=Slc47a1 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 6.954e-13
Identity = 52/240 (21.67%), Postives = 104/240 (43.33%), Query Frame = 2
Query:  236 ESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILLGMASALETLCGQAFGAKQYHMLGIYLQRSWIVLTICAXXXXXXXXXXXXXXVALGQEENIAEVAGTISFMLIPVLFAFIISFTCQMYLQAQSRNMIISYLAACXXXXXXXXXXXXTMKLNFGLPGALGSTILAYWIPNLGQLLFVICGGCPQ-TWKGFSFAAFKDLWPVIKFSLSSGVMLCLE 952
            E + L ++A PA   +   F ++ +S  F GH+G  +L A +L   V+      +  G++SA +TL  Q +G++    +G+ LQR  ++L +C               +   Q+ +++ +  T   + IP L A  +      YL  Q   +                       L+ G+ G+  +  ++ +   +   L+++     Q TW G+S+   +D    ++ ++ S +MLC+E
Sbjct:   34 ELRALLVLAGPAFLAQLMMFLISFISSVFCGHLGKLELDAVTLAIAVINVTGISVGHGLSSACDTLISQTYGSQNLKHVGVILQRGTLILLLCCFPCWALFINTEQILLLFRQDPDVSRLTQTYVMIFIPALPAAFLYTLQVKYLLNQGIVLPQIMTGIAANLVNALANYVFLYHLHLGVMGSALANTISQFALAIFLFLYILWRRLHQATWGGWSWECLQDWASFLRLAIPSMLMLCIE 273          
The following BLAST results are available for this feature:
BLAST of DY262611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
TT12_ARATH5.122e-3232.92Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
S47A1_XENTR3.940e-1623.89Multidrug and toxin extrusion protein 1 OS=Xenopus... [more]
YJ2D_SCHPO3.335e-1524.82Uncharacterized transporter C4B3.13 OS=Schizosacch... [more]
YL47_SCHPO5.689e-1527.36Uncharacterized transporter C323.07c OS=Schizosacc... [more]
S47A1_HUMAN4.816e-1422.92Multidrug and toxin extrusion protein 1 OS=Homo sa... [more]
S47A2_MOUSE1.830e-1324.38Multidrug and toxin extrusion protein 2 OS=Mus mus... [more]
S47A2_RABIT3.122e-1321.49Multidrug and toxin extrusion protein 2 OS=Oryctol... [more]
S47A2_PONAB3.122e-1321.86Multidrug and toxin extrusion protein 2 OS=Pongo a... [more]
S47A1_PONAB3.122e-1325.10Multidrug and toxin extrusion protein 1 OS=Pongo a... [more]
S47A1_MOUSE6.954e-1321.67Multidrug and toxin extrusion protein 1 OS=Mus mus... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100BG12RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262611 ID=DY262611; Name=DY262611; organism=Citrus clementina; type=EST; length=1187bp
ATTTTCTTTGCGGAAGAAAAGCAAGGCCTTTTGAGAGCTCCCTTTGCACT
ATTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTGCTAGC
TCTCATCTGTCACTTGAAAGAAAAGCTTTTTTTCTGGAGGTGAGAATGGT
GGGAGAGATCAAAGAGAAGCTATTAGGAAACACGGAGGAAAATGATGTTG
ATGGGCAAGTGAAATTCAGGCAAAAGCTGTGGGTGGAATCCAAAAAGTTA
TGGATTGTAGCAGCTCCCGCTATTTTCACAAGATTTTCTTCATTTGGGCT
CAACGTAGTTAGTCAGGCATTTATTGGGCACATTGGCGCGACCCAACTAG
CTGCCTACTCACTTGTGTTTACTGTTCTCTTGAGGTTTGCAAATGGCATC
CTGTTGGGCATGGCTAGTGCATTAGAGACGCTCTGTGGGCAAGCTTTTGG
GGCGAAACAATACCACATGCTAGGAATATATCTTCAAAGATCATGGATAG
TCTTAACCATTTGTGCTATCCTTCTCTTACCTCTGTTCTTCTTCACTACA
CCAATTTTGGTGGCTTTGGGCCAAGAAGAAAATATTGCTGAAGTGGCAGG
AACTATTTCTTTCATGCTAATCCCTGTGTTGTTCGCCTTCATCATATCCT
TTACCTGCCAAATGTACCTACAAGCCCAGAGCAGAAACATGATTATCTCC
TACTTGGCGGCATGTTCATTTTTGCTTCATCTCTTTCTTTCGTGGCTTTT
TACCATGAAATTGAATTTTGGACTCCCTGGAGCATTGGGATCAACAATTC
TGGCATACTGGATTCCAAACTTGGGTCAACTTCTGTTTGTTATATGTGGA
GGGTGCCCTCAAACATGGAAGGGTTTCTCATTTGCCGCTTTCAAGGATCT
CTGGCCTGTAATAAAATTTTCCTTGTCGTCTGGTGTCATGCTATGTCTCG
AGGCTCTGGTACAACACAGTCTTGGTTTCTTTAACAAGAAAAATTGAAAA
ATGCTGAGGTTGCCATTGATGCTCTTGCGATATGCATCAACATCATTGGG
CAAAAAATAATAATTCTCCCTGGTTTTCCGGGCTGGCAGTAGGGTGTTAG
GGGGGCAAAAGGACTTTGGCCGAAGAAAACCAAAATGCTACCAAATTTGC
TTATAAAGGGGGGGGTTTTTTCCATCCTTTTTTTAAT
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