DY262620

Overview
NameDY262620
Unique NameDY262620
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1134
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262620_ssr83 microsatellite DY262620_ssr83:83..98. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2340 contig Ccv1_Contig2340:1..1139. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY262620 vs. ExPASy Swiss-Prot
Match: LBD38_ARATH (LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.997e-50
Identity = 112/197 (56.85%), Postives = 126/197 (63.96%), Query Frame = 1
Query:  220 MSCNGCRVLRKGCSENCMLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGPLQPLPCSL---------APELDDVSESAVNCTN---------------------NSPKDVITPPPKRKAVSDFQ---DDLHLGLKPCLPEK 711
            MSCNGCRVLRKGCSENC+LR  IQWI +P+AQ +ATVFVAKFFGRAGLMSFISAVPE+Q P+LFQSLLYEA GRTVNPV+GAVGLLWTGNWNVCQ+AVE VL GG L+P+P  L         +P  D+ SE      N                      S       PPKRK +S  Q    +L L L P  P K
Sbjct:    1 MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQCPALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPIPELLNGGGFAGFPSPTSDEASEICTEMLNLRKADDSGDRNIYHHCRFSSSRSRSRSTASPPKRKRLSSEQQPSSELDLSLIPIYPIK 197          
BLAST of DY262620 vs. ExPASy Swiss-Prot
Match: LBD37_ARATH (LOB domain-containing protein 37 OS=Arabidopsis thaliana GN=LBD37 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 2.147e-48
Identity = 89/111 (80.18%), Postives = 101/111 (90.99%), Query Frame = 1
Query:  220 MSCNGCRVLRKGCSENCMLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGPLQPLP 552
            MSCNGCRVLRKGCSENC+LR  IQWI T  AQ +ATVFVAKFFGRAGLMSFISAVP++QRP+LFQSLLYEA GRTVNPV+GA+G+LWTGNWN+CQ+AVE VL GG L+P+P
Sbjct:    1 MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQRPALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRPIP 111          
BLAST of DY262620 vs. ExPASy Swiss-Prot
Match: LBD39_ARATH (LOB domain-containing protein 39 OS=Arabidopsis thaliana GN=LBD39 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 4.191e-44
Identity = 83/110 (75.45%), Postives = 98/110 (89.09%), Query Frame = 1
Query:  220 MSCNGCRVLRKGCSENCMLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGPLQPL 549
            MSCNGCRVLRKGCSE C+LR  +QWI + ++Q +ATVFVAKFFGRAGLMSFIS+VPE QRP+LFQSLL+EA GRTVNPV+GAVG+LWT NW+VCQ+AVE VL GG L+P+
Sbjct:    1 MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQRPALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTLRPI 110          
BLAST of DY262620 vs. ExPASy Swiss-Prot
Match: LBD40_ARATH (LOB domain-containing protein 40 OS=Arabidopsis thaliana GN=LBD40 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.811e-40
Identity = 72/117 (61.54%), Postives = 96/117 (82.05%), Query Frame = 1
Query:  214 INMSCNGCRVLRKGCSENCMLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGPLQPLPCSLA 564
            + MSCNGCRVLRKGCSENC +R  +QWI + ++QANATVF+AKF+GRAGLM+ ++  P+  RP++F+SLLYEA GR VNP+ G+VGLLW+GNW++CQ+AVE V+ G P+ P+ C  A
Sbjct:    1 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPIACDAA 117          
BLAST of DY262620 vs. ExPASy Swiss-Prot
Match: LBD41_ARATH (LOB domain-containing protein 41 OS=Arabidopsis thaliana GN=LBD41 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 9.999e-38
Identity = 71/117 (60.68%), Postives = 92/117 (78.63%), Query Frame = 1
Query:  214 INMSCNGCRVLRKGCSENCMLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGPLQPLPCSLA 564
            + MSCNGCRVLRKGCSE+C +R  + WI +P+AQANATVF+AKF+GRAGLM+ I+A P   RP +F+SLL+EA GR VNP+ G+VGLLW+GNW +CQ AVE V+ G P++ +    A
Sbjct:    1 MRMSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNHLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKGEPVKEIATDAA 117          
BLAST of DY262620 vs. ExPASy Swiss-Prot
Match: LBD42_ARATH (LOB domain-containing protein 42 OS=Arabidopsis thaliana GN=LBD42 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.723e-35
Identity = 68/119 (57.14%), Postives = 94/119 (78.99%), Query Frame = 1
Query:  214 INMSCNGCRVLRKGCSENCMLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGPL--QPLPCSLA 564
            + +SCNGCRVLRKGC+++C +R  +QWI +  +QANAT+F+AKF+GRAGL++ I + P+  RP++F+SLLYEA GR VNPV G+VGL+W+GNW  CQ+AV+ VL G P+   PLP + A
Sbjct:    1 MRISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDHLRPAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNGLPITHTPLPSASA 119          
The following BLAST results are available for this feature:
BLAST of DY262620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
LBD38_ARATH2.997e-5056.85LOB domain-containing protein 38 OS=Arabidopsis th... [more]
LBD37_ARATH2.147e-4880.18LOB domain-containing protein 37 OS=Arabidopsis th... [more]
LBD39_ARATH4.191e-4475.45LOB domain-containing protein 39 OS=Arabidopsis th... [more]
LBD40_ARATH2.811e-4061.54LOB domain-containing protein 40 OS=Arabidopsis th... [more]
LBD41_ARATH9.999e-3860.68LOB domain-containing protein 41 OS=Arabidopsis th... [more]
LBD42_ARATH2.723e-3557.14LOB domain-containing protein 42 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA100BH09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262620 ID=DY262620; Name=DY262620; organism=Citrus clementina; type=EST; length=1134bp
CCCGCACACACCCAAATACACTCATACCCTCAAAATCTTCTTTCCTTGTT
GCTACGAGTCTACGACTATTCTTTCATTCTCATCTCTCTCTCTCTCTCCC
TTGCTTGCAATCCAAGAAACCAATCCAAGCTTTATGCTTTCTTTATAATT
ATTTATTTAATTTCATTTTTATTTTTGCTTCTGTTTCGTATGACGTGTGC
TGAGCGAAAAAAAATCAACATGAGTTGCAATGGGTGTAGAGTTTTGAGAA
AAGGTTGCAGTGAAAACTGCATGCTTCGTCAAAGCATTCAATGGATCGGC
ACCCCACAAGCTCAAGCAAACGCCACCGTTTTTGTTGCCAAGTTCTTCGG
CCGCGCCGGCCTCATGTCCTTCATCTCCGCCGTCCCCGAAACCCAACGTC
CCTCATTGTTTCAGTCGCTGTTATATGAAGCGGTGGGAAGAACAGTGAAC
CCAGTGAGCGGCGCCGTGGGGCTTCTGTGGACAGGAAACTGGAACGTGTG
CCAGTCGGCGGTGGAGAGAGTTCTCTGCGGCGGCCCGTTGCAGCCGCTGC
CTTGCTCACTGGCGCCGGAACTTGATGACGTGTCAGAATCTGCCGTGAAC
TGTACCAACAATAGTCCGAAGGACGTCATCACTCCGCCACCGAAGAGGAA
GGCTGTTTCTGATTTTCAAGATGATCTTCATCTGGGTCTGAAGCCTTGTT
TGCCAGAGAAGCTTAGGGCAGAGACGCCGTCGGAGGAGTCCGAAACGACG
ACGTCGGGAACCGGGTCTGATAATTGTTGCTCTGAGGTCGCAGGTGAAAA
GAAGCTTTTGAGACTCTTCCTCTGAAACAACAGACGAAAGAAGAAGAATG
AATTGTCGCTTCTTATCAATCACAAAAAACATAGTCAAGAGATGATGGCA
GCAAAATTTGGAGCCATGAATGGATTGTAGGGCAAGTAATGTACACAAAT
AGCAGAAGTTAATTTCGATGAGAAAACCGAAAGTGACTGGCTTTTGAAAA
AGCAAATGAATGGAATTAACAGCATTTGATTTTGGGTTTTGATTTTTAAT
TTCTGACCACCCAAGGAAAAAGGAAAATAACCAAATGGTTTTTGGGGCCA
CAACCGAATCCCACCCTATCTAAAAACCCCTTCC
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