DY262629

Overview
NameDY262629
Unique NameDY262629
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1183
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262629_ssr125 microsatellite DY262629_ssr125:125..136. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY262629 vs. ExPASy Swiss-Prot
Match: VPE_CITSI (Vacuolar-processing enzyme OS=Citrus sinensis PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 2.198e-59
Identity = 127/219 (57.99%), Postives = 142/219 (64.84%), Query Frame = 2
Query:    2 TLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHALSLLRKGGLKDEILLFSCMMTSLFMEKTPGPGVINNHPPGDDVYKGISKELPGEKGTV*NFFAGFPXXXXXXXXXXXXXXXNRPPRIQFSFLLQKRGALGGWGGPPTQNIFRRKRLRPLKKNWFLGK*KTWDFFFQTRETGEIFLG 658
            TLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHA  LLRKGGLKDE ++        F E+ P PGVI NHP GDDVYKG+ K+  GE  TV  FFA                  + P    F F     G  G  G P ++ I+  + +  LKK    G  K+  F+ +  E+G IF G
Sbjct:   11 TLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVEKFFAVVLGNKTALTGGSGKVVDSGPNDHIFIF-YSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEG 228          
BLAST of DY262629 vs. ExPASy Swiss-Prot
Match: VPE_VICSA (Vacuolar-processing enzyme OS=Vicia sativa PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.343e-32
Identity = 83/219 (37.90%), Postives = 110/219 (50.23%), Query Frame = 2
Query:    2 TLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHALSLLRKGGLKDEILLFSCMMTSLFMEKTPGPGVINNHPPGDDVYKGISKELPGEKGTV*NFFAGFPXXXXXXXXXXXXXXXNRPPRIQFSFLLQKRGALGGWGGPPTQNIFRRKRLRPLKKNWFLGK*KTWDFFFQTRETGEIFLG 658
            T++V    +    RD+ GD L+LPSE  RFF       +  +DDD  GTRWA+LLAGSNG+WNYRHQ+D+CHA  LLRKGG K+E ++          E+ P PGVI N P GDDVY G+ K+  G +    NF+A                  + P    F +     G  G  G P    ++       LKK    G  K+  F+ +  E+G IF G
Sbjct:   13 TIVVTFLTVVSSGRDLPGDYLRLPSETSRFFR------EPKNDDDFEGTRWAILLAGSNGYWNYRHQSDVCHAYQLLRKGGSKEENIIVFMYDDIASNEENPRPGVIINKPDGDDVYAGVPKDYTGAEVHADNFYAALLGNKSALTGGSGKVVDSGPNDHIFVYYTD-HGGPGVLGMPVGPYLYASDLNEVLKKKHASGTYKSLVFYLEACESGSIFEG 224          
BLAST of DY262629 vs. ExPASy Swiss-Prot
Match: VPEG_ARATH (Vacuolar-processing enzyme gamma-isozyme OS=Arabidopsis thaliana GN=At4g32940 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 3.907e-32
Identity = 91/242 (37.60%), Postives = 122/242 (50.41%), Query Frame = 2
Query:    5 LLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHALSLLRKGGLKDEILLFSCMMTSLFMEKTPGPGVINNHPPGDDVYKGISKELPGEKGTV*NFFAGFPXXXXXXXXXXXXXXXNRPPRIQFSFLLQKRGALGGWGGPPTQNIFRRKRLRPLKKNWFLGK*KTWDFFFQTRETGEIFLGGFFPRG*KYLSTPPFQKGKKKNWG 730
            LLV+L  ++  +R    D++KLPS+A RFF         NDDD + GTRWAVL+AGS+G+WNYRHQADICHA  LLRKGGLK+E ++           + P PG I N P G DVY+G+ K+  G+   V N FA                  + P    F F     G  G  G P +  ++       LKK   LG  K+  F+ +  E+G IF  G  P G    +T      ++ +WG
Sbjct:   17 LLVSLVAVS-AARSGPDDVIKLPSQASRFFRPAE-----NDDDSNSGTRWAVLVAGSSGYWNYRHQADICHAYQLLRKGGLKEENIVVFMYDDIANNYENPRPGTIINSPHGKDVYQGVPKDYTGDDVNVDNLFAVILGDKTAVKGGSGKVVDSGPNDHIFIF-YSDHGGPGVLGMPTSPYLYANDLNDVLKKKHALGTYKSLVFYLEACESGSIF-EGLLPEGLNIYATTA-SNAEESSWG 249          
BLAST of DY262629 vs. ExPASy Swiss-Prot
Match: VPE1_PHAVU (Vacuolar-processing enzyme OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.939e-31
Identity = 84/218 (38.53%), Postives = 105/218 (48.17%), Query Frame = 2
Query:    5 LLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHALSLLRKGGLKDEILLFSCMMTSLFMEKTPGPGVINNHPPGDDVYKGISKELPGEKGTV*NFFAGFPXXXXXXXXXXXXXXXNRPPRIQFSFLLQKRGALGGWGGPPTQNIFRRKRLRPLKKNWFLGK*KTWDFFFQTRETGEIFLG 658
            LL+ L  +    RD+ GD L+LPS++       G G  V+      GTRWA+L AGS+G+WNYRHQADICHA  LLRKGGLKDE ++        F  + P  GVI N P GD+VYKG+ K+  GE  T  NF+A                  N  P           G  G  G P    I+       LKK    G  K   F+ +  E+G IF G
Sbjct:   14 LLLFLVALVSAGRDLVGDFLRLPSDS-------GNGDNVH------GTRWAILFAGSSGYWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNSENPRRGVIINSPNGDEVYKGVPKDYTGEDVTAHNFYAAL-LGDKSKLTGGSGKVVNSGPNDHIFIFYSDHGGPGVLGSPAGPYIYASDLNEVLKKKHASGTYKNLVFYLEACESGSIFEG 217          
BLAST of DY262629 vs. ExPASy Swiss-Prot
Match: VPEA_ARATH (Vacuolar-processing enzyme alpha-isozyme OS=Arabidopsis thaliana GN=At2g25940 PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 1.390e-29
Identity = 81/228 (35.53%), Postives = 117/228 (51.32%), Query Frame = 2
Query:   47 IAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHALSLLRKGGLKDEILLFSCMMTSLFMEKTPGPGVINNHPPGDDVYKGISKELPGEKGTV*NFFAGFPXXXXXXXXXXXXXXXNRPPRIQFSFLLQKRGALGGWGGPPTQNIFRRKRLRPLKKNWFLGK*KTWDFFFQTRETGEIFLGGFFPRG*KYLSTPPFQKGKKKNWG 730
            ++GD++KLPS A +FF          +DDDS  T+WAVL+AGS+G+WNYRHQAD+CHA  LL+KGG+K+E ++          E+ P PGVI N P G+DVY G+ K+  G++  V N  A                  + P    F +     G  G  G P + N++       LKK +  G  K+  F+ +  E+G IF  G  P G    +T      ++ +WG
Sbjct:   18 VSGDVIKLPSLASKFFR------PTENDDDS--TKWAVLVAGSSGYWNYRHQADVCHAYQLLKKGGVKEENIVVFMYDDIAKNEENPRPGVIINSPNGEDVYNGVPKDYTGDEVNVDNLLAVILGNKTALKGGSGKVVDSGPNDHIFIY-YSDHGGPGVLGMPTSPNLYANDLNDVLKKKYASGTYKSLVFYLEACESGSIF-EGLLPEGLNIYATTA-SNAEESSWG 234          
BLAST of DY262629 vs. ExPASy Swiss-Prot
Match: VPE_RICCO (Vacuolar-processing enzyme OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 3.204e-26
Identity = 71/178 (39.89%), Postives = 90/178 (50.56%), Query Frame = 2
Query:  125 DDDDSVGTRWAVLLAGSNGFWNYRHQADICHALSLLRKGGLKDEILLFSCMMTSLFMEKTPGPGVINNHPPGDDVYKGISKELPGEKGTV*NFFAGFPXXXXXXXXXXXXXXXNRPPRIQFSFLLQKRGALGGWGGPPTQNIFRRKRLRPLKKNWFLGK*KTWDFFFQTRETGEIFLG 658
            DDDD +GTRWAVL+AGS GF NYRHQAD+CHA  LLRKGGLK+E ++          E  P PGVI NHP G+DVY G+ K+  GE  T  N +A                  ++P    F +     G  G  G P    ++    +  LKK    G  K    + +  E+G IF G
Sbjct:   54 DDDDQLGTRWAVLVAGSMGFGNYRHQADVCHAYQLLRKGGLKEENIIVFMYDDIAKNELNPRPGVIINHPQGEDVYAGVPKDYTGEHVTAKNLYAVLLGDKSAVQGGSGKVVDSKPNDRIFLY-YSDHGGPGVLGMPNLPYLYAMDFIEVLKKKHAAGGYKKMVIYVEACESGSIFEG 230          
BLAST of DY262629 vs. ExPASy Swiss-Prot
Match: VPEB_ARATH (Vacuolar-processing enzyme beta-isozyme OS=Arabidopsis thaliana GN=At1g62710 PE=2 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 7.137e-26
Identity = 68/179 (37.99%), Postives = 91/179 (50.84%), Query Frame = 2
Query:  122 NDDDDSVGTRWAVLLAGSNGFWNYRHQADICHALSLLRKGGLKDEILLFSCMMTSLFMEKTPGPGVINNHPPGDDVYKGISKELPGEKGTV*NFFAGFPXXXXXXXXXXXXXXXNRPPRIQFSFLLQKRGALGGWGGPPTQNIFRRKRLRPLKKNWFLGK*KTWDFFFQTRETGEIFLG 658
            + D+D VGTRWAVL+AGS+G+ NYRHQAD+CHA  +LRKGGLK+E ++             P PG + NHP GDDVY G+ K+  G   T  NF+A                  ++P    F +     G  G  G P T +I+    +  LKK    G  K    + +  E+G IF G
Sbjct:   42 DQDEDGVGTRWAVLVAGSSGYGNYRHQADVCHAYQILRKGGLKEENIVVLMYDDIANHPLNPRPGTLINHPDGDDVYAGVPKDYTGSSVTAANFYAVLLGDQKAVKGGSGKVIASKPNDHIFVYYAD-HGGPGVLGMPNTPHIYAADFIETLKKKHASGTYKEMVIYVEACESGSIFEG 219          
BLAST of DY262629 vs. ExPASy Swiss-Prot
Match: VPE_SOYBN (Vacuolar-processing enzyme OS=Glycine max PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.999e-24
Identity = 76/225 (33.78%), Postives = 105/225 (46.67%), Query Frame = 2
Query:   59 ILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHALSLLRKGGLKDEILLFSCMMTSLFMEKTPGPGVINNHPPGDDVYKGISKELPGEKGTV*NFFAGFPXXXXXXXXXXXXXXXNRPPRIQFSFLLQKRGALGGWGGPPTQNIFRRKRLRPLKKNWFLGK*KTWDFFFQTRETGEIFLGGFFPRG*K-YLSTPPFQKGKKKNWG 730
            ++KLP+E             V+ D D VGTRWAVL+AGSNG+ NYRHQAD+CHA  LL KGGLK+E ++          E  P  GVI NHP G+D+Y G+ K+  G+  T  N FA                  N  P  +        G  G  G P    ++    +  LKK    G  K    + +  E+G +F  G  P+    Y++T      ++ +WG
Sbjct:   42 VIKLPTEP------------VDADSDEVGTRWAVLVAGSNGYGNYRHQADVCHAYQLLIKGGLKEENIVVFMYDDIATNELNPRHGVIINHPEGEDLYAGVPKDYTGDNVTTENLFAVI-LGDKSKLKGGSGKVINSKPEDRIFIYYSDHGGPGILGMPNMPYLYAMDFIDVLKKKHASGSYKEMVIYVEACESGSVF-EGIMPKDLNIYVTTA--SNAQENSWG 250          
BLAST of DY262629 vs. ExPASy Swiss-Prot
Match: VPE2_PHAVU (Vacuolar-processing enzyme OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.999e-24
Identity = 77/225 (34.22%), Postives = 107/225 (47.56%), Query Frame = 2
Query:   59 ILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHALSLLRKGGLKDEILLFSCMMTSLFMEKTPGPGVINNHPPGDDVYKGISKELPGEKGTV*NFFAGFPXXXXXXXXXXXXXXXNRPPRIQFSFLLQKRGALGGWGGPPTQNIFRRKRLRPLKKNWFLGK*KTWDFFFQTRETGEIFLGGFFPRG*K-YLSTPPFQKGKKKNWG 730
            ++KLP++            +V+ + D VGTRWAVL+AGSNG+ NYRHQAD+CHA  LL KGG+K+E ++          E  P PGVI N+P G DVY G+ K+  GE  T  NFFA                  N  P  +        G  G  G P    ++    +  LKK    G  K    + +  E+G IF  G  P+    Y++T      ++ +WG
Sbjct:   40 VIKLPTQ------------EVDAESDEVGTRWAVLVAGSNGYGNYRHQADVCHAYQLLIKGGVKEENIVVFMYDDIATHELNPRPGVIINNPQGPDVYAGVPKDYTGESVTSHNFFAVL-LGDKSKVKGGSGKVINSKPEDRIFVYYSDHGGPGVLGMPNMPYLYAMDFIDVLKKKHASGGYKEMVIYVEACESGSIF-EGIMPKDLNIYVTTA--SNAQENSWG 248          
BLAST of DY262629 vs. ExPASy Swiss-Prot
Match: LEGU_CANEN (Legumain OS=Canavalia ensiformis PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 5.115e-24
Identity = 67/176 (38.07%), Postives = 85/176 (48.30%), Query Frame = 2
Query:  131 DDSVGTRWAVLLAGSNGFWNYRHQADICHALSLLRKGGLKDEILLFSCMMTSLFMEKTPGPGVINNHPPGDDVYKGISKELPGEKGTV*NFFAGFPXXXXXXXXXXXXXXXNRPPRIQFSFLLQKRGALGGWGGPPTQNIFRRKRLRPLKKNWFLGK*KTWDFFFQTRETGEIFLG 658
            DD VGTRWAVL+AGSNG+ NYRHQAD+CHA  LL KGG+K+E ++        +    P PGVI NHP G DVY G+ K+  GE  T  N +A                  N  P  +        G  G  G P    ++    +  LKK    G  K    + +  E+G IF G
Sbjct:   34 DDEVGTRWAVLVAGSNGYGNYRHQADVCHAYQLLIKGGVKEENIVVFMYDDIAYNAMNPRPGVIINHPQGPDVYAGVPKDYTGEDVTPENLYAVI-LGDKSKVKGGSGKVINSNPEDRIFIFYSDHGGPGVLGMPNAPFVYAMDFIDVLKKKHASGGYKEMVIYIEACESGSIFEG 208          
The following BLAST results are available for this feature:
BLAST of DY262629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
VPE_CITSI2.198e-5957.99Vacuolar-processing enzyme OS=Citrus sinensis PE=2... [more]
VPE_VICSA1.343e-3237.90Vacuolar-processing enzyme OS=Vicia sativa PE=1 SV... [more]
VPEG_ARATH3.907e-3237.60Vacuolar-processing enzyme gamma-isozyme OS=Arabid... [more]
VPE1_PHAVU1.939e-3138.53Vacuolar-processing enzyme OS=Phaseolus vulgaris P... [more]
VPEA_ARATH1.390e-2935.53Vacuolar-processing enzyme alpha-isozyme OS=Arabid... [more]
VPE_RICCO3.204e-2639.89Vacuolar-processing enzyme OS=Ricinus communis PE=... [more]
VPEB_ARATH7.137e-2637.99Vacuolar-processing enzyme beta-isozyme OS=Arabido... [more]
VPE_SOYBN2.999e-2433.78Vacuolar-processing enzyme OS=Glycine max PE=2 SV=... [more]
VPE2_PHAVU2.999e-2434.22Vacuolar-processing enzyme OS=Phaseolus vulgaris P... [more]
LEGU_CANEN5.115e-2438.07Legumain OS=Canavalia ensiformis PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100CA08RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262629 ID=DY262629; Name=DY262629; organism=Citrus clementina; type=EST; length=1183bp
CACGCTCCTAGTCGCTCTTGCAGGAATCGCCGATGGAAGCAGAGACATAG
CAGGTGACATTCTGAAGCTACCATCGGAAGCCTATAGGTTCTTCCATAAT
GGTGGGGGAGGGGCAAAGGTCAACGATGATGATGATTCTGTCGGCACGAG
ATGGGCCGTCCTGCTTGCCGGATCTAATGGCTTCTGGAATTACAGGCATC
AGGCTGATATTTGTCATGCTTTATCACTCTTGAGGAAAGGTGGGCTGAAG
GATGAAATATTATTGTTTTCATGTATGATGACATCGCTTTTCATGGAGAA
AACCCCAGGGCCTGGAGTCATCAATAACCACCCCCCTGGCGATGATGTTT
ACAAAGGAATTTCCAAGGAATTACCGGGGGAAAAAGGTACTGTTTAAAAC
TTTTTTGCTGGTTTCCCGGGAAAATAAAAACTCCTTAAAGGGGGGATGGG
GAAAGGTTTGGGAAACCGGCCCCCCAGGATCCAATTTTCTTTTTTACTCC
AAAAAAGGGGGGCCCTGGGGGGCTGGGGAGGCCCCCCCACCCAAAATATA
TTCCGGAGAAAACGGTTAAGGCCTTTAAAAAAAAACTGGTTTTTGGGGAA
ATAAAAAACCTGGGATTTTTTTTTCCAAACCCGGGAAACTGGAGAAATCT
TTTTAGGGGGTTTTTTCCCTAGGGGGTAAAAATATTTATCAACCCCCCCC
TTTCAAAAGGGGAAAAAAAAAAATTGGGGGGGCCCATTTTCCTGGGAAAA
AAAACCCGGGCCCCCCCCCCGAAAAAAAAAACTGGTTTTGGGGGATTTGG
TAAAAAATTCTTGGGGAGGGGGGAAGAGGAGATAATACACACTTTTTGGG
AAAAAAAACTTCTTCCCCAGCATTAAGAAACTGGTTAAAACAAGGGACTG
CTAGTTACAATTTCGTAGGGCTCTCATGTCATGCAATAATGGTGATAATC
GGTCTTAGCAAGGAACAATCTCTTCCAGTTACTTTGGGTACAAAATCCTG
GCAAATGATAAACTACACTTTTTGGTGGATGAAAAAACTCCCTTAAGGCC
AGCCATCCTAAGCCTGGTAAACCAGCCAGAATTGCCAATTTCCTTTCATT
TTTTGGGGAACAAGTAACGCCAAGGGCCCCTGAAGGGGCCCTCCCCTAGG
AAAAGGTTAAAAACCCCAAAAAAACCAGTTTTT
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