DY262631

Overview
NameDY262631
Unique NameDY262631
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1170
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262631_ssr170 microsatellite DY262631_ssr170:170..181. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2341 contig Ccv1_Contig2341:1..1170. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY262631 vs. ExPASy Swiss-Prot
Match: MCM4B_XENLA (DNA replication licensing factor mcm4-B OS=Xenopus laevis GN=mcm4-B PE=1 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 3.361e-28
Identity = 67/220 (30.45%), Postives = 112/220 (50.91%), Query Frame = 2
Query:  263 TPSRSNRRSNGQRHATSPSSTDDVPLSSSEAGDDMDEATPTFVWGTNISVQDVKSAIQMFLKHFRXXXXXXXXXXXXIYKEGKYMRAINRVLEIEGEWIDVDANDVFDYDSDLYNKMVRYPLEVLAIFDIVLMDIVSLINP--LFEKHVQVRIYNLKSSTAMRNLNPSDIEKMVSLKGMIIRCSSIIPEIREAIFRCLVCGYYSDPIVVDKGRIIEPSPC 916
            TP+R        R         D P +      +        +WGT+++V   K   Q F++ F                E  YM+ +  +  +   ++++D + + ++D DLY ++V YP EV+  FD+   +I     P  + E  +QVR YN   +  MR+LNP DI++++++ GM+IR S IIPE++EA F+C VC  ++  + +D+GRI EPS C
Sbjct:  110 TPARQRPDLGSARKVKQVDLHSDQPAAEELVTSEQSLGQKLVIWGTDVNVATCKEKFQRFVQRFIDPSAKEEDNVGLDLNEPIYMQRLEEINVVGDPFLNIDCDHLRNFDQDLYRQLVCYPQEVIPTFDMAANEIFFERYPDSILEHQIQVRPYNALKTRNMRSLNPEDIDQLITISGMVIRTSQIIPEMQEAFFKCQVCA-FTTRVEIDRGRIAEPSVC 328          
BLAST of DY262631 vs. ExPASy Swiss-Prot
Match: MCM4_SCHPO (DNA replication licensing factor mcm4 OS=Schizosaccharomyces pombe GN=mcm4 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 5.102e-28
Identity = 72/256 (28.12%), Postives = 136/256 (53.12%), Query Frame = 2
Query:  209 TPRANQSRFATSSETPNTTPSRSNRRSNGQRHATSPSS-----TDDVPLSSSEAGDDMDEATPTFVWGTNISVQDVKSAIQMFLKHFRXXXXXXXXXXXXIYKEGK---YMRAINRVLEIEGEWIDVDANDVFDYD--SDLYNKMVRYPLEVLAIFDIVLMDIV----------SLINPLFEKHVQVRIYNLKSSTAMRNLNPSDIEKMVSLKGMIIRCSSIIPEIREAIFRCLVCGYYSDPIVVDKGRIIEPSPC 916
            TPR+ + R    S    +TPSR       +   ++PSS     +D +  S +    ++ + T   +WGTN+S+Q+  ++ + FL+ F+               + +   Y+ A+  +  +  E +++D  D+  Y     LY+++  YP E++ I D  + D++           ++N +  K  ++R +NL+    MR+LNP DI+K++S+KG+++RC+ +IP++++A FRC VCG +   + +D+GRI EP  C
Sbjct:   95 TPRSTR-RGDIHSSVQMSTPSRRREVDPQRPGVSTPSSLLFSGSDALTFSQAHPSSEVADDTVRVIWGTNVSIQESIASFRGFLRGFKKKYRPEYRNELMPPPDAEQLVYIEALRNMRIMGLEILNLDVQDLKHYPPTKKLYHQLYSYPQEIIPIMDQTIKDVMLDLLGTNPPEDVLNDIELKIYKIRPFNLEKCINMRDLNPGDIDKLISIKGLVLRCTPVIPDMKQAFFRCSVCG-HCVTVEIDRGRIAEPIKC 348          

HSP 2 Score: 25.409 bits (54), Expect = 5.102e-28
Identity = 12/28 (42.86%), Postives = 17/28 (60.71%), Query Frame = 3
Query:  930 CLGKNSMTLGPNQSRVADKQIGRVQGKP 1013
            C   N+M L  N+S  ADKQ+ ++Q  P
Sbjct:  353 CGATNAMQLIHNRSEFADKQVIKLQETP 380          
BLAST of DY262631 vs. ExPASy Swiss-Prot
Match: MCM4_XENTR (DNA replication licensing factor mcm4 OS=Xenopus tropicalis GN=mcm4 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 5.733e-28
Identity = 68/220 (30.91%), Postives = 111/220 (50.45%), Query Frame = 2
Query:  263 TPSRSNRRSNGQRHATSPSSTDDVPLSSSEAGDDMDEATPTFVWGTNISVQDVKSAIQMFLKHFRXXXXXXXXXXXXIYKEGKYMRAINRVLEIEGEWIDVDANDVFDYDSDLYNKMVRYPLEVLAIFDIVLMDIVSLINP--LFEKHVQVRIYNLKSSTAMRNLNPSDIEKMVSLKGMIIRCSSIIPEIREAIFRCLVCGYYSDPIVVDKGRIIEPSPC 916
            TP+R        R         D P +      +        +WGT+++V   K   Q F++ F                E  YM+ +  +  +   +++VD + +  +D DLY ++V YP EV+  FD+   +I     P  + E  +QVR YN   +  MR+LNP DI++++++ GM+IR S IIPE++EA F+C VC  ++  + +D+GRI EPS C
Sbjct:  110 TPARQRPDLGSARKVKQVDLHSDQPAAEELVTSEQSLGQKLVIWGTDVNVATCKEKFQRFVQRFIDPLAKEEENVGLDLNEPIYMQRLEEINVVGEPFLNVDCDHLRSFDQDLYRQLVCYPQEVIPTFDMAANEIFFERYPDSILEHQIQVRPYNALKTRNMRSLNPEDIDQLITISGMVIRTSQIIPEMQEAFFKCQVCA-FTTRVEIDRGRISEPSVC 328          
BLAST of DY262631 vs. ExPASy Swiss-Prot
Match: MCM4A_XENLA (DNA replication licensing factor mcm4-A OS=Xenopus laevis GN=mcm4-A PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.668e-27
Identity = 66/220 (30.00%), Postives = 111/220 (50.45%), Query Frame = 2
Query:  263 TPSRSNRRSNGQRHATSPSSTDDVPLSSSEAGDDMDEATPTFVWGTNISVQDVKSAIQMFLKHFRXXXXXXXXXXXXIYKEGKYMRAINRVLEIEGEWIDVDANDVFDYDSDLYNKMVRYPLEVLAIFDIVLMDIVSLINP--LFEKHVQVRIYNLKSSTAMRNLNPSDIEKMVSLKGMIIRCSSIIPEIREAIFRCLVCGYYSDPIVVDKGRIIEPSPC 916
            TP+R        R         D P +      +        +WGT+++V   K   Q F++ F                E  YM+ +  +  +   ++++D + +  +D DLY ++V YP EV+  FD+   +I     P  + E  +QVR YN   +  MR+LNP DI++++++ GM+IR S IIPE++E+ F+C VC  ++  + +D+GRI EPS C
Sbjct:  105 TPARQRADLGSARKVKQVDLHSDQPAAEELVTSEQSLGQKLVIWGTDVNVAICKEKFQRFVQRFIDPLAKEEENVGLDLNEPIYMQRLEEINVVGEPFLNIDCDHLRSFDQDLYRQLVCYPQEVIPTFDMAANEIFFERYPDSILEHQIQVRPYNALKTRNMRSLNPEDIDQLITISGMVIRTSQIIPEMQESFFKCQVCA-FTTRVEIDRGRIAEPSVC 323          
BLAST of DY262631 vs. ExPASy Swiss-Prot
Match: MCM4_DROME (DNA replication licensing factor MCM4 OS=Drosophila melanogaster GN=dpa PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 1.844e-26
Identity = 65/206 (31.55%), Postives = 114/206 (55.34%), Query Frame = 2
Query:  317 SSTDDVPLSSSEAGDDMDEATPT---FVWGTNISVQDVKSAIQMFLKHFRXXXXXXXXXXXXI-YKEGKYMRAINRVLEIEGEWIDVDANDVFDYDSDLYNKMVRYPLEVLAIFDIVLMDIVSLINP--LFEKHVQVRIYNLKSSTAMRNLNPSDIEKMVSLKGMIIRCSSIIPEIREAIFRCLVCGYYSDPIVVDKGRIIEPSPC 916
            S  + +P   SE  D + E++      VWGTN+ V   KS  + F+  F             I   +  Y++ +  +  +E  +++++   +  +D DLY +++ YP EV+  FD+ + ++     P  L E  +QVR +N   +  MR+LNP D+++++S+ GM+IR S++IPE+REA F C +C  +S  + VD+GRI +P+ C
Sbjct:  127 SGLEPIPEKGSETTDPVSESSQAPQLVVWGTNVVVSQCKSKFKSFIMRFIDPSAEQDEISENIDVNQPLYLQKLEEIHTLEEPYLNLNCAHLKTFDQDLYRQLICYPQEVIPGFDMAINEMFFERYPAALLEHQIQVRPFNADKTRNMRSLNPEDMDQLISISGMVIRSSNVIPEMREAFFSCNICS-FSTTVEVDRGRINQPTLC 331          
BLAST of DY262631 vs. ExPASy Swiss-Prot
Match: MCM4_HUMAN (DNA replication licensing factor MCM4 OS=Homo sapiens GN=MCM4 PE=1 SV=5)

HSP 1 Score: 119.398 bits (298), Expect = 4.108e-26
Identity = 63/202 (31.19%), Postives = 110/202 (54.46%), Query Frame = 2
Query:  317 SSTDDVPLSSSEAGDDMDEATPTFVWGTNISVQDVKSAIQMFLKHFRXXXXXXXXXXXXIYKEGKYMRAINRVLEIEGEWIDVDANDVFDYDSDLYNKMVRYPLEVLAIFDIVLMDIVSLINP--LFEKHVQVRIYNLKSSTAMRNLNPSDIEKMVSLKGMIIRCSSIIPEIREAIFRCLVCGYYSDPIVVDKGRIIEPSPC 916
            ++ +D+  S    G  +       +WGT+++V   K   Q FL+ F                E  YM+ +  +  I   +++V+   +  +D +LY +++ YP EV+  FD+ + +I     P  + E  +QVR +N   +  MRNLNP DI++++++ GM+IR S +IPE++EA F+C VC  ++  + +D+GRI EPS C
Sbjct:  134 AAAEDIVASEQSLGQKL------VIWGTDVNVAACKENFQRFLQRFIDPLAKEEENVGIDITEPLYMQRLGEINVIGEPFLNVNCEHIKSFDKNLYRQLISYPQEVIPTFDMAVNEIFFDRYPDSILEHQIQVRPFNALKTKNMRNLNPEDIDQLITISGMVIRTSQLIPEMQEAFFQCQVCA-HTTRVEMDRGRIAEPSVC 328          
BLAST of DY262631 vs. ExPASy Swiss-Prot
Match: MCM4_MOUSE (DNA replication licensing factor MCM4 OS=Mus musculus GN=Mcm4 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.322e-24
Identity = 59/180 (32.78%), Postives = 104/180 (57.78%), Query Frame = 2
Query:  389 VWGTNISVQDVKSAIQMFLKHFRXXXXXXXXXXXXIYKEGKYMRAINRVLEIEGE-WIDVDANDVFDYDSDLYNKMVRYPLEVLAIFDIVLMDIVSLINP--LFEKHVQVRIYNLKSSTAMRNLNPSDIEKMVSLKGMIIRCSSIIPEIREAIFRCLVCGYYSDPIVVDKGRIIEPSPCL 919
            +WGT+++V   K   Q FL+ F                +  YM+ +  +  I GE +++V+   +  +  +LY +++ YP EV+  FD+ + +I     P  + E  +QVR +N   + +MRNLNP DI++++++ GM+IR S +IPE++EA F+C VC  ++  + +D+GRI EP  C+
Sbjct:  151 IWGTDVNVATCKENFQRFLQCFTDPLAKEEENVGIDITQPLYMQQLGEI-NITGEPFLNVNCEHIKSFSKNLYRQLISYPQEVIPTFDMAVNEIFFDRYPDSILEHQIQVRPFNALKTKSMRNLNPEDIDQLITISGMVIRTSQLIPEMQEAFFQCQVCA-HTTRVEIDRGRIAEPCSCV 328          
BLAST of DY262631 vs. ExPASy Swiss-Prot
Match: CDC54_YEAST (Cell division control protein 54 OS=Saccharomyces cerevisiae GN=CDC54 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.386e-24
Identity = 66/217 (30.41%), Postives = 118/217 (54.38%), Query Frame = 2
Query:  317 SSTDDVPLSSSEAGDDMDEATPTFVWGTNISVQDVKSAIQMFLKHFRXXXXXXXXXXXXIY-----KEGKYMRAINRVLEIEGEWIDVDANDVFDYDS--DLYNKMVRYPLEVLAIFDIVLMD-IVSLI---------NPLFEKHVQVRIYNLKSSTAMRNLNPSDIEKMVSLKGMIIRCSSIIPEIREAIFRCLVCGYYSDPIVVDKGRIIEPSPC 916
            S  + +  SSS A           +WGTN+S+Q+  +  + FL  F+                   +E  Y++ +N + E+    +++DA ++  Y    DLY++++ YP EV++I D  + D +VSLI         + +  K  +VR YN+ S   MR LNP+DI+K+++LKG+++R + +IP+++ A F+C VC  ++  + +D+G I EP+ C
Sbjct:  156 SGVNTLDTSSSSAPPSEASEPLRIIWGTNVSIQECTTNFRNFLMSFKYKFRKILDEREEFINNTTDEELYYIKQLNEMRELGTSNLNLDARNLLAYKQTEDLYHQLLNYPQEVISIMDQTIKDCMVSLIVDNNLDYDLDEIETKFYKVRPYNVGSCKGMRELNPNDIDKLINLKGLVLRSTPVIPDMKVAFFKCNVCD-HTMAVEIDRGVIQEPARC 371          

HSP 2 Score: 25.409 bits (54), Expect = 1.386e-24
Identity = 12/29 (41.38%), Postives = 18/29 (62.07%), Query Frame = 3
Query:  927 ECLGKNSMTLGPNQSRVADKQIGRVQGKP 1013
            +C   NSM+L  N+   ADKQ+ ++Q  P
Sbjct:  375 DCNEPNSMSLIHNRCSFADKQVIKLQETP 403          
The following BLAST results are available for this feature:
BLAST of DY262631 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
MCM4B_XENLA3.361e-2830.45DNA replication licensing factor mcm4-B OS=Xenopus... [more]
MCM4_SCHPO5.102e-2828.13DNA replication licensing factor mcm4 OS=Schizosac... [more]
MCM4_XENTR5.733e-2830.91DNA replication licensing factor mcm4 OS=Xenopus t... [more]
MCM4A_XENLA1.668e-2730.00DNA replication licensing factor mcm4-A OS=Xenopus... [more]
MCM4_DROME1.844e-2631.55DNA replication licensing factor MCM4 OS=Drosophil... [more]
MCM4_HUMAN4.108e-2631.19DNA replication licensing factor MCM4 OS=Homo sapi... [more]
MCM4_MOUSE1.322e-2432.78DNA replication licensing factor MCM4 OS=Mus muscu... [more]
CDC54_YEAST1.386e-2430.41Cell division control protein 54 OS=Saccharomyces ... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA100CA10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262631 ID=DY262631; Name=DY262631; organism=Citrus clementina; type=EST; length=1170bp
CTTGCCTCTCCCTCGCATTCAGTCAGTAACCATGGCGTCTGATTCAGGCT
TCCCCAGCTTCAACGACGGGCCGTCGTCCCCGGACGATTCAATTTCAACT
CCAATCGACAACACCTTCTCCTCTCCAGCCGGCTCCTCACGCGCCTCCGG
TCGCGGTCGTGGTGGCGGACGCCGCCGCCGCCGATCCACGACACCGACAG
CCTTCCTTACGCCACGGGCAAACCAATCCCGCTTCGCCACTTCCTCTGAA
ACCCCAAACACCACGCCATCCCGCTCAAACCGCAGATCCAACGGTCAAAG
ACACGCCACGTCGCCGTCCTCAACCGACGATGTCCCACTATCGTCCTCTG
AGGCCGGCGACGACATGGACGAGGCCACGCCGACGTTCGTATGGGGCACG
AACATTAGCGTGCAAGACGTTAAAAGCGCTATACAAATGTTCTTGAAGCA
TTTTAGAGAGAAAGAAGAGCTGCTGAGTGGAAGTGAGAGTGAGATTTATA
AAGAGGGGAAGTATATGAGAGCTATAAATAGGGTTCTTGAAATTGAAGGA
GAGTGGATTGATGTTGATGCAAATGATGTGTTTGATTATGATTCCGACTT
GTATAACAAAATGGTTCGATACCCACTTGAGGTTTTGGCAATTTTCGATA
TTGTGTTGATGGATATTGTTAGTTTGATTAACCCCTTGTTTGAAAAGCAT
GTGCAAGTAAGGATTTATAATCTTAAGAGCTCCACTGCAATGCGAAATCT
CAACCCATCAGATATCGAGAAGATGGTATCATTAAAGGGAATGATTATTC
GGTGTAGTTCGATAATACCAGAGATTAGGGAGGCTATATTTAGGTGTCTT
GTATGTGGGTACTACTCGGACCCCATTGTGGTGGATAAAGGACGGATAAT
TGAACCTTCACCATGCTTGGAGCCAGGAGTGTCTTGGTAAGAACTCCATG
ACGCTGGGGCCAAATCAAAGCAGGGTTGCTGATAAGCAAATTGGGAGGGT
TCAGGGAAAACCTTGAAGAAAATTCCGGAGGGGGGAAAAACAAAAACACA
TGGACCCTTTTTAATGCATGAAAAAGTTAAGGGGGAGGGTGGGAAAAACC
CCGGGGACAAAAAAATTAAGAGCCCCGGGGGAAATTTAAGGGGGGTTTAG
AAACGCCCCCAAAAAGGGGG
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