DY262641

Overview
NameDY262641
Unique NameDY262641
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1327
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2749 contig Ccv1_Contig2749:20..1365. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY262641 vs. ExPASy Swiss-Prot
Match: CCA1_ARATH (Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.677e-26
Identity = 56/72 (77.78%), Postives = 63/72 (87.50%), Query Frame = 2 
Query:  368 SCGNDFAPKPRKPYTITKQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVRES 583
            S G D   K RKPYTITKQRERWTEEEH +F+EAL+L+GRAW+KIEEHV TKTAVQIRSHAQKFFSKV +E+
Sbjct:    5 SSGEDLVIKTRKPYTITKQRERWTEEEHNRFIEALRLYGRAWQKIEEHVATKTAVQIRSHAQKFFSKVEKEA 76
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BLAST of DY262641 vs. ExPASy Swiss-Prot
Match: LHY_ARATH (Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 1.419e-25
Identity = 52/75 (69.33%), Postives = 66/75 (88.00%), Query Frame = 2 
Query:  359 DQFSCGNDFAPKPRKPYTITKQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVRES 583
            D  + G +   K RKPYTITKQRERWTE+EH++FLEAL+L+GRAW++IEEH+GTKTAVQIRSHAQKFF+K+ +E+
Sbjct:    2 DTNTSGEELLAKARKPYTITKQRERWTEDEHERFLEALRLYGRAWQRIEEHIGTKTAVQIRSHAQKFFTKLEKEA 76
[Close]
BLAST of DY262641 vs. ExPASy Swiss-Prot
Match: MYBG_DICDI (Myb-like protein G OS=Dictyostelium discoideum GN=mybG PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.000e-20
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 2 
Query:  392 KPRKPYTITKQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVRESNG 589
            K RKPYTI+KQRE WT+EEH+KFLEAL LF R W+KIE  VG+KT +QIRSHAQK+F KV + + G
Sbjct:   30 KSRKPYTISKQRENWTDEEHQKFLEALTLFDRDWKKIESFVGSKTVIQIRSHAQKYFIKVQKNNTG 95
The following BLAST results are available for this feature:
BLAST of DY262641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CCA1_ARATH1.677e-2677.78Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 ... [more]
LHY_ARATH1.419e-2569.33Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV... [more]
MYBG_DICDI4.000e-2068.18Myb-like protein G OS=Dictyostelium discoideum GN=... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA100CB08RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262641 ID=DY262641; Name=DY262641; organism=Citrus clementina; type=EST; length=1327bp
TTTCTTTTTCCCTTTTTTGACAAAGAGGAAGTGTAATTTCTGTTTGTTTG
AGCTACATAGAATTGGTAGATTTTGAGGGAAAAAAAAGAAAAAAGAAGAA
AGGAGTATGAGCTTTAATTTATGTATGGTGATTTTGATTGCGGAGAAGTC
GAAGACAGCGGGAACTGCTGTTATTGCGGAGAGTGTTGATTCCTGAGGCA
ATATTTAATCTTGAGAAGAGAAGGAGATCTTGCTTAGTTACAAGAATATG
GCTGTTCAAGACGAATGTGGAGGTAATCATTCAAATTCGGTTTTCTCGGC
TGCCAATGGAATTGAATCAAGTTCTGGCCTGCATACTGTAACTGGTCTTG
AAGTAAAGGATCAGTTTTCTTGTGGGAACGATTTTGCTCCCAAGCCAAGA
AAACCATACACAATCACAAAGCAAAGAGAAAGATGGACGGAAGAAGAGCA
TAAGAAATTCCTTGAAGCTCTAAAGCTGTTTGGTCGAGCGTGGCGGAAGA
TAGAGGAACATGTGGGCACAAAGACTGCAGTGCAGATACGAAGCCATGCT
CAGAAATTCTTTTCTAAGGTTGTTCGCGAGTCAAATGGCTGCAGCACAAG
CCCAGTGGAACCCGTCGAAATTCCTCCTCCTCGACCAAAACGAAAACCTA
TGCACCCTTACCCTCGCAAATTGGCCCATCCACCTGTTAAAGAAAGCCTA
AATCCAGAGCTATCTAGAACATCTTTGTCTCCGATTTTATCAGTTTCAGA
ACGAGAGAACCAATCTCCAACATCAGTATTGTTTGCAATAGGCTCTGATG
CCTTTGGTTCCTCTGATTCAAACTCTCCGAATGGCAGCTTGTCACCTGTT
TCATCCGCTGTCCCTGAACAGCTTGGTGGGTTAACACTTTCTCATCCTAG
TTCATCACCTGAAGAAAGGGGATCTCCATCTTCTGACCCTGTAACTCCCC
GGTTCGTTACTGATGAGCAATCTCCAAAGTGGCCCTGAAAATGGGGCTTT
CTCCCCCACGTTTTGGATAAAAAATATCTGATGTTGAAACCACCTCCCGG
AATTCCGAACCTTTTTGGAACATTGGTATTATTCCTGATTTCTCAAAAAA
CAATCTTCCTCAACTGAAGGGAACTGGTAAATATATTGAATCATTTTCCT
TCCAAGGCTCTTGGGGGGGAAAACCTTTTGCATTTTTTTGCCCGTGGGAG
GTGTATGCAAACCGCAAATCACTGGTTTGGAAGGAGTGCAAAAAAAAGGT
CGGGGGGGGACCCTCTCCCCTCGCCCCACAGGGGAAGGGGGGGGGCGGGG
GGGCGGTTTTTTTTTTTTTTTGTGATT
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