DY262643

Overview
NameDY262643
Unique NameDY262643
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1279
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262643_ssr525 microsatellite DY262643_ssr525:525..536. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY262643 vs. ExPASy Swiss-Prot
Match: BH145_ARATH (Transcription factor bHLH145 OS=Arabidopsis thaliana GN=BHLH145 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 7.660e-21
Identity = 95/290 (32.76%), Postives = 137/290 (47.24%), Query Frame = 1
Query:   97 GWFYCLPRFRQAFMPASLSILKEQLPAAPFVNHGETTKTKAGSGCAQKRFLVFDQSGDQTTFMFSSGIGNPVQCLTSWSPKPLGRYNLSPDIQGAKADTNVLSMPNLIDDLDETNGADLQSE--MHEDTEELNALLXXXXXXXXXXXXXXXXXXXXXHSPS-TMTAHEKQDWFDGSTEEVASSAGPIKKRKLFDGVYDDVPLPVPSSSVKCNLHLDDEDDAESSCANSENPGSD--EFGSVSTNKRMRKEKIRETVSVLRSIIPDGEXKDCMLVLDETIDYLKSLRLKPK 951
            GW +     +Q F+P     +K+     P    G  +K  A   C+QKRFLVFDQSGDQTT + +S I    + L         + +  PD++     +N         DL   +G    SE  + ED+EELNALL                     HSPS  ++  E Q  F GS  +  ++    KKRK+         L   + S++         DAESSC + +N      +   +S+NK + +EKI ETVS+LRS++P  E  D +LV+D  IDYLKSL+++ K
Sbjct:   66 GWVHGSSHLQQQFLPPQNQCMKQ----VPLQVDGVISK--AEEQCSQKRFLVFDQSGDQTTLLLASDIRKSFETL---------KQHACPDMKEELQRSN--------KDLFVCHGMQGNSEPDLKEDSEELNALLYSEDESGYCSEEDEVTSAD--HSPSIVVSGREDQKTFLGSYGQPLNA----KKRKI---------LETSNESMR---------DAESSCGSCDNTRISFLKRSKLSSNK-IGEEKIFETVSLLRSVVPGEELVDPILVIDRAIDYLKSLKMEAK 307          
BLAST of DY262643 vs. ExPASy Swiss-Prot
Match: BH143_ARATH (Transcription factor bHLH143 OS=Arabidopsis thaliana GN=BHLH143 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.352e-17
Identity = 75/238 (31.51%), Postives = 119/238 (50.00%), Query Frame = 1
Query:  232 AQKRFLVFDQSGDQTTFMFSSGIGNPVQCLTSWSPKPLGRYNLSPDIQGAKADTNVLSMPNLIDDLDETNGADLQSEMHEDTEELNALLXXXXXXXXXXXXXXXXXXXXXHSPSTMTAHEKQDWFDGSTEEVASSAGPIKKR-KLFDGVY-DDVPLPVPSSSVKCNLHLDDEDDAESSCANSENPGSDEFGSVSTNKRMRKEKIRETVSVLRSIIPDGEXKDCMLVLDETIDYLKSLR 939
            ++KRF+VFDQSG+QT  +     G P++  +S   +   R N+   +   K  +   ++   I   ++    +  SEMHEDTEE+NALL                     HSP T+         +   E  ++  GP+ KR KL D  Y D  P  V ++ VK    L DE+  ES+ ++ +     E GS  ++++ RK+KI   + +L S++P  + K+ +L+LDE IDYLK L+
Sbjct:   91 SRKRFIVFDQSGEQTRLL---QCGFPLRFPSSMDAE---RGNILGALHPEKGFSKDHAIQEKILQHEDHENGEEDSEMHEDTEEINALLYSDDDDNDDWESDDEVMSTG-HSPFTVEQQACNITTEELDETESTVDGPLLKRQKLLDHSYRDSSPSLVGTTKVK---GLSDENLPESNISSKQ-----ETGSGLSDEQSRKDKIHTALRILESVVPGAKGKEALLLLDEAIDYLKLLK 313          
The following BLAST results are available for this feature:
BLAST of DY262643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
BH145_ARATH7.660e-2132.76Transcription factor bHLH145 OS=Arabidopsis thalia... [more]
BH143_ARATH1.352e-1731.51Transcription factor bHLH143 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA100CB10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262643 ID=DY262643; Name=DY262643; organism=Citrus clementina; type=EST; length=1279bp
CTTGGAACTAATAACGTCCCAACAAATGGAAAACTGCCAGTTAATGCATA
TCCTGTGCAACCTCACTCACAGGCTGCCGAAGCAATTGAACCTCATGGTT
GGTTTTATTGTTTGCCTCGCTTCAGACAGGCCTTTATGCCTGCTTCACTC
TCTATTTTGAAAGAGCAATTACCTGCTGCCCCATTTGTGAATCATGGTGA
GACTACCAAAACGAAGGCAGGATCTGGGTGTGCTCAGAAGAGATTTCTTG
TTTTTGATCAATCCGGAGATCAAACGACTTTCATGTTTAGCTCTGGAATT
GGAAATCCTGTCCAATGCTTGACTTCTTGGAGTCCAAAGCCACTTGGTAG
GTATAATTTGAGTCCTGACATTCAAGGAGCTAAAGCAGATACAAATGTAC
TCTCCATGCCAAATTTAATTGATGACTTAGATGAAACTAATGGGGCTGAT
CTGCAAAGTGAAATGCATGAGGACACTGAAGAACTCAATGCACTACTGTA
CTCAGATGATGATGGTGATTACACTGATGATGATGAGGATGATGAAGTTA
CGAGCACTGGTCATTCCCCTAGTACAATGACAGCTCATGAGAAGCAAGAT
TGGTTTGATGGGAGCACAGAAGAGGTTGCTAGCTCAGCTGGACCTATCAA
GAAGCGAAAGCTTTTTGATGGAGTTTATGATGATGTGCCCTTGCCCGTCC
CTTCTAGTTCTGTCAAATGTAATTTACACCTTGACGATGAGGATGATGCA
GAATCTAGTTGTGCCAACAGTGAGAATCCTGGGTCAGATGAATTTGGTTC
TGTATCAACCAACAAGAGAATGAGAAAGGAGAAAATACGGGAAACGGTGA
GTGTTCTCCGGAGTATTATTCCTGATGGAGAANGCAAGGATTGCATGTTG
GTTCTCGATGAAACTATTGATTACTTGAAATCCCTGAGGCTTAAGCCCAA
AGCTTTGGGACTGGATTCTCCATGAATCATGTTTTCTTTTACTGGTAGTT
TTAATTTAATACCTGGCATTATCATTTCCTCTAAAATAAAAATTCTCCTT
TTGAATGGGCTAAAAAAAATTGGGTAAATAATCGGGGGGGCGGGCCGGGC
GGCCGGGCGGGGTGTGGAATGCAAAAAATGGGGATTTTCTACCAATGGAA
GAAATTTTTAAGATACCGAAAAGGAGACGGGGGTTTTTCTCCCTTTATAG
TGTTTCTTCCAGTTATTAATTTGTGAAAAAACACCAAAAAATTTTCCTTG
TTCTCAAATTTTTTCCCCCTTTCTTTCCC
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