DY262655

Overview
NameDY262655
Unique NameDY262655
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1289
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2342 contig Ccv1_Contig2342:1..1289. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_LEGPL (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Legionella pneumophila (strain Lens) GN=gatA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.971e-16
Identity = 49/149 (32.89%), Postives = 76/149 (51.01%), Query Frame = 1
Query:  418 EGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRV 864
            + GA  IGKT +DEFA   +  N ++ +  NP    ++P              LV F++G DT G +R P+AFCGI G +P+YG VS  G++  ++SLD  G FA+  + L  + H +         S  ++I   D    +K P D++
Sbjct:  109 QNGAIIIGKTNMDEFAMGSSNENSYFGSVKNPWDRERVPGGSSGGSAAAVAGSLVPFAIGSDTGGSIRQPAAFCGISGIKPTYGLVSRYGMVAFASSLDQAGPFAKSAEDLAMILHCIAGFDSKDSTSADRVI--PDYSTEIKKPVDKI 255          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_LEGPC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Legionella pneumophila (strain Corby) GN=gatA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.971e-16
Identity = 49/149 (32.89%), Postives = 77/149 (51.68%), Query Frame = 1
Query:  418 EGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRV 864
            + GA  IGKT +DEFA   +  N ++ +  NP    ++P             +LV F++G DT G +R P+AFCGI G +P+YG VS  G++  ++SLD  G FA+  + L  + H +         S  ++I   D    +K P D++
Sbjct:  109 QNGAIIIGKTNMDEFAMGSSNENSYFGSVKNPWDRERVPGGSSGGSAAAVAGNLVPFAIGSDTGGSIRQPAAFCGISGIKPTYGLVSRYGMVAFASSLDQAGPFAKSAEDLAMILHCIAGFDSKDSTSVDRVI--PDYSAEIKKPVDKI 255          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_LEGPA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Legionella pneumophila (strain Paris) GN=gatA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.971e-16
Identity = 49/149 (32.89%), Postives = 77/149 (51.68%), Query Frame = 1
Query:  418 EGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRV 864
            + GA  IGKT +DEFA   +  N ++ +  NP    ++P             +LV F++G DT G +R P+AFCGI G +P+YG VS  G++  ++SLD  G FA+  + L  + H +         S  ++I   D    +K P D++
Sbjct:  109 QNGAIIIGKTNMDEFAMGSSNENSYFGSVKNPWDRERVPGGSSGGSAAAVAGNLVPFAIGSDTGGSIRQPAAFCGISGIKPTYGLVSRYGMVAFASSLDQAGPFAKSAEDLAMILHCIAGFDSKDSTSVDRVI--PDYSAEIKKPVDKI 255          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_HELMI (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=gatA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.971e-16
Identity = 46/116 (39.66%), Postives = 63/116 (54.31%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHV 759
            L E GA  +GKT +DEFA   +  N  +    NP    ++P                 FSLG DT G +R P+AFCG++G +P+YGAVS  G+I  ++SLD +G F RD +   HV
Sbjct:  111 LKEAGAVMMGKTNLDEFAMGSSTENSGFFATCNPWDIERVPGGSSGGSAASVAAGQAVFSLGSDTGGSIRQPAAFCGVVGLKPTYGAVSRFGLIAFASSLDQIGPFTRDVRDCAHV 226          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_METHJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=gatA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 7.492e-16
Identity = 56/190 (29.47%), Postives = 86/190 (45.26%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVFEHENLGEYFESKVPSLKGFHKT 981
            L   GA  +GKT +DEF       N  Y    NP    ++P              LVD ++G DT G +R P+AFCGI+G +P+YG VS  G+I  + SL+ +G  ARD + L ++  V+      A    R     D  ++    P   +  + I   ++ FG  V  + N+ E     + +L+    T
Sbjct:   69 LKNAGAAIVGKTNMDEFGMGTTTENSAYGPTLNPLDHQRVPGGSSGGSAAAVAAGLVDCAIGSDTGGSIRCPAAFCGIVGLKPTYGRVSRFGLIAYANSLEQIGPMARDVQTLSNLYSVI------AGHDSRDATSVDKPYK--HNPVSDITGLKIGVPDEFFGEGV--NPNVAEVVRQAIDTLESMGAT 248          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_SYNP6 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=gatA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 9.784e-16
Identity = 42/108 (38.89%), Postives = 61/108 (56.48%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 735
            L E GA  +GKT +DEFA   +  N  Y T  NP   +++P             D    +LG DT G +R P+AFCG++G +P+YG VS  G++  ++SLD +G F+R
Sbjct:  107 LAEAGAVAVGKTNLDEFAVGSSTENSAYQTTANPWDLTRVPGGSSGGSAAAVAADECVVALGSDTGGSIRQPAAFCGVVGLKPTYGLVSRYGLVAYASSLDQIGPFSR 214          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_SYNE7 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus elongatus (strain PCC 7942) GN=gatA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 9.784e-16
Identity = 42/108 (38.89%), Postives = 61/108 (56.48%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 735
            L E GA  +GKT +DEFA   +  N  Y T  NP   +++P             D    +LG DT G +R P+AFCG++G +P+YG VS  G++  ++SLD +G F+R
Sbjct:  107 LAEAGAVAVGKTNLDEFAMGSSTENSAYQTTANPWDLTRVPGGSSGGSAAAVAADECVVALGSDTGGSIRQPAAFCGVVGLKPTYGLVSRYGLVAYASSLDQIGPFSR 214          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_LEGPH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=gatA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.669e-15
Identity = 48/149 (32.21%), Postives = 76/149 (51.01%), Query Frame = 1
Query:  418 EGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRV 864
            + GA  IGKT +DEFA   +  N ++ +  NP    ++              +LV F++G DT G +R P+AFCGI G +P+YG VS  G++  ++SLD  G FA+  + L  + H +         S  ++I   D    +K P D++
Sbjct:  109 QNGAIIIGKTNMDEFAMGSSNENSYFGSVKNPWDRERVSGGSSGGSAAAVAGNLVPFAIGSDTGGSIRQPAAFCGISGIKPTYGLVSRYGMVAFASSLDQAGPFAKSAEDLAMILHCMAGFDSKDSTSVDRVI--PDYSAEIKNPVDKI 255          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_SYNFM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=gatA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.180e-15
Identity = 48/149 (32.21%), Postives = 71/149 (47.65%), Query Frame = 1
Query:  292 GLSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 738
            G+  A+ D+  ++G VT  G                    L E GA  +GKT +DEFA   +  N  Y    NP    ++P             DL   SLG DT G +R P++FCG++G +P+YG VS  G++  ++SLD +G   +D
Sbjct:   72 GIPLAIKDVLCMQGTVTTCGSR--ILENFVPPYDGTVIARLREAGAIFLGKTNMDEFAMGSSTENSAYGVTRNPWDRERVPGGSSGGSAAAVAADLCSGSLGTDTGGSIRQPASFCGVVGLKPTYGRVSRFGLVAFASSLDQIGPITKD 218          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATH_YEAST (Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial OS=Saccharomyces cerevisiae GN=HER2 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.718e-15
Identity = 47/123 (38.21%), Postives = 64/123 (52.03%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQ---MPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL 771
            L + G   +GKT +DEF     G +       NP  P +   +              DLVDF+LG DT G VR+P+ +  +LGF+PSYG +S  G+I  S SLDTVG  ++   +LR V H L
Sbjct:   84 LKQAGVHILGKTNLDEFGMGSGGVHSIRGPVINPLYPHEDKKIMGGSSSGAAASVACDLVDFALGTDTGGSVRLPACYGSVLGFKPSYGRLSRFGVIAYSQSLDTVGILSKKINVLRKVFHTL 206          
The following BLAST results are available for this feature:
BLAST of DY262655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
GATA_LEGPL1.971e-1632.89Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_LEGPC1.971e-1632.89Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_LEGPA1.971e-1632.89Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_HELMI1.971e-1639.66Glutamyl-tRNA(Gln) amidotransferase subunit A OS=H... [more]
GATA_METHJ7.492e-1629.47Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_SYNP69.784e-1638.89Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_SYNE79.784e-1638.89Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_LEGPH1.669e-1532.21Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_SYNFM2.180e-1532.21Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATH_YEAST3.718e-1538.21Glutamyl-tRNA(Gln) amidotransferase subunit A, mit... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100CC10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262655 ID=DY262655; Name=DY262655; organism=Citrus clementina; type=EST; length=1289bp
CAGCTTCAGGTTGCTCCTCTCCTCCTCGAGCTCTTAGGTTTTGATAGCAG
TGCGTGTGGGTGCTGCTTCCTTGTTTGGTTAAAGTTCAAATTAAGAATTA
TATCGAGTTCCTATATGGCTTCTCAATCTGCTAATTTATGGGTATTGTTG
GGTCTGGGTTTAGCTGGAATTCTGCTAATGACTAAAAAGCTTAAGAAGAA
TATAAAACAAGATTTTGGAGCGTTCATCGAGAAACTTCAACTGCTTCCTC
CGCCTCAGCCCCTTCCTCCAAAAGCCCCTCATCCTCTTACCGGCCTCTCT
TTTGCCGTCTCTGACCTATTCGATATCGAAGGATACGTGACTGGTTTTGG
GCATCCAGAGTGGGCCCGGACGCACAGTGCAGCTTCTCGAACGTCTACTG
TGGTTTCCACCCTCGTCGAAGGAGGTGCCACTTGCATTGGCAAAACTGTG
GTTGATGAATTTGCCTACAGTATAAATGGAACAAATAAGCATTATGATAC
GCCTACTAATCCTGCTGCACCTTCACAAATGCCGGGTGGATCTTCTAGTG
GGGCTGCTGTGGCCGTTGCTGCTGATCTTGTTGATTTCTCCTTGGGTATT
GATACTGTTGGAGGTGTGAGGGTACCTTCTGCATTTTGTGGAATTTTAGG
GTTCCGGCCCTCCTATGGGGCTGTTTCCCACATGGGGATTATACCCATTT
CAACAAGTCTTGATACTGTTGGTTGGTTTGCTAGGGATCCTAAAATTCTG
CGTCATGTTGGCCATGTGTTGCTGCAACTTCCATTTGCAGCTCAACGTAG
TCCAAGACAAATTATAATTGCTGATGATTGTTTTGAGCTCTTGAAGATTC
CTGCTGACAGGGTTGTTCAGGTGGTAATTAAGTCAACTGAGAAACTTTTT
GGGAGACAAGTGTTTGAGCATGAAAACCTCGGAGAATATTTTGAATCTAA
AGTTCCAAGCTTGAAAGGGTTTCACAAAACAAATGGTGAACTAAAAAATG
TTATTGCGTTAAATCCACCGATATGAATTCAAAAATAATCAAAATGGATG
GAATTGAATCAAAAAAACCCGCCTCAAATTCTGAAATTCTCTTGCAAAAT
TGAAAAAATGTTGAAAAATTAAGAAAAAGTGGAAAAAAAATGTGCAATTC
CTTTTGAAAAAAAATTGCGTTTTACCATTTAATTTCTTCCTTTTAAAAAA
AGAAAGGGAATTTTTTTGGTAACCCTTCTCACCTGTCTATATCCTCCCTC
TCCAAAACTTTTTGGGGGGGAAAAAGAAAAAAATTTTTT
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