DY262656

Overview
NameDY262656
Unique NameDY262656
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262656 vs. ExPASy Swiss-Prot
Match: FCL1_ARATH (GDP-L-fucose synthase 1 OS=Arabidopsis thaliana GN=GER1 PE=1 SV=2)

HSP 1 Score: 274.633 bits (701), Expect = 3.960e-73
Identity = 127/160 (79.38%), Postives = 147/160 (91.88%), Query Frame = 1
Query:    1 QAYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEHLNVGSGKEVSIKELAELVKEVVGFEGELVWDSSKPDGTPKKLMDSSKLAGLGWKAKIELKNGLADTYKWNLENV 480
            QAY+IQ+ ++AISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGA+EVVVWGTGSPLREFLHVDDLADA VF++D Y GLEH+N+GSG+EV+I+ELAELVKEVVGFEG+L WD +KPDGTP+KLMDSSKLA LGW  K+ L++GL+ TY W L+NV
Sbjct:  150 QAYRIQHGWDAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAEEVVVWGTGSPLREFLHVDDLADACVFLLDRYSGLEHVNIGSGQEVTIRELAELVKEVVGFEGKLGWDCTKPDGTPRKLMDSSKLASLGWTPKVSLRDGLSQTYDWYLKNV 309          
BLAST of DY262656 vs. ExPASy Swiss-Prot
Match: FCL1_ORYSJ (Probable GDP-L-fucose synthase 1 OS=Oryza sativa subsp. japonica GN=Os06g0652400 PE=2 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 6.755e-73
Identity = 127/160 (79.38%), Postives = 144/160 (90.00%), Query Frame = 1
Query:    1 QAYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEHLNVGSGKEVSIKELAELVKEVVGFEGELVWDSSKPDGTPKKLMDSSKLAGLGWKAKIELKNGLADTYKWNLENV 480
            QAY+IQ+ F+AIS MPTNLYGP DNFHPENSHVLPAL+RRFHEAK + A EVVVWGTGSPLREFLHVDDLADAV+F+MD Y GLEH+NVGSG EV+IKELAELVKEVVGF+G+LVWDSSKPDGTP+KLMDSSK+  +GWK K+ LK GL +TYKW +ENV
Sbjct:  164 QAYRIQHGFDAISAMPTNLYGPQDNFHPENSHVLPALIRRFHEAKASNAAEVVVWGTGSPLREFLHVDDLADAVIFLMDHYSGLEHVNVGSGSEVTIKELAELVKEVVGFQGKLVWDSSKPDGTPRKLMDSSKIQEMGWKPKVPLKEGLVETYKWYVENV 323          
BLAST of DY262656 vs. ExPASy Swiss-Prot
Match: FCL2_ARATH (Putative GDP-L-fucose synthase 2 OS=Arabidopsis thaliana GN=GER2 PE=2 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 8.823e-73
Identity = 128/162 (79.01%), Postives = 147/162 (90.74%), Query Frame = 1
Query:    1 QAYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEHLNVGSGKEVSIKELAELVKEVVGFEGELVWDSSKPDGTPKKLMDSSKLAGLGWKAKIELKNGLADTYKWNLENVKQ 486
            QAY++Q++++AISGMPTNLYG NDNFHPENSHVLPALMRRFHEAK N A EVVVWG+GSPLREFLHVDDLADA VF+MD+Y G EH+NVGSG EV+IKELAELVKEVVGF+G+LVWD++KPDGTP+KLMDSSKLA LGW  KI LK+GL+ TY+W LENV Q
Sbjct:  164 QAYRLQHQWDAISGMPTNLYGQNDNFHPENSHVLPALMRRFHEAKANNADEVVVWGSGSPLREFLHVDDLADACVFLMDQYSGFEHVNVGSGVEVTIKELAELVKEVVGFKGKLVWDTTKPDGTPRKLMDSSKLASLGWTPKISLKDGLSQTYEWYLENVVQ 325          
BLAST of DY262656 vs. ExPASy Swiss-Prot
Match: FCL_ECOLI (GDP-L-fucose synthetase OS=Escherichia coli (strain K12) GN=fcl PE=1 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 9.823e-48
Identity = 90/168 (53.57%), Postives = 124/168 (73.81%), Query Frame = 1
Query:    1 QAYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMD---------EYDGLEHLNVGSGKEVSIKELAELVKEVVGFEGELVWDSSKPDGTPKKLMDSSKLAGLGWKAKIELKNGLADTYKWNLEN 477
            ++Y  QY  +  S MPTNLYGP+DNFHP NSHV+PAL+RRFHEA    A +VVVWG+G+P+REFLHVDD+A A + +M+             L H+NVG+G + +I+ELA+ + +VVG++G +V+D+SKPDGTP+KL+D ++L  LGW  +I L+ GLA TY+W LEN
Sbjct:  148 ESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLHQLGWYHEISLEAGLASTYQWFLEN 315          
BLAST of DY262656 vs. ExPASy Swiss-Prot
Match: FCL2_ORYSJ (Putative GDP-L-fucose synthase 2 OS=Oryza sativa subsp. japonica GN=Os06g0652300 PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.188e-47
Identity = 82/159 (51.57%), Postives = 122/159 (76.73%), Query Frame = 1
Query:    1 QAYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEHLNVGSGKEVSIKELAELVKEVVGFEGELVWDSSKPDGTPKKLMDSSKLAGLGWKAKIELKNGLADTYKWNLEN 477
            QA + +Y  +AI+  P NLYGP   F PE+SHV+PAL+RRFH AK+ GA EV VWG+G+  REF HVDDLA+AVV +M+ Y G EH+NVGSG+EV+++ELAE V+ VVG+EG + WD+++P+G  ++++DS ++  LGW+ ++ L++G+ D Y++ L +
Sbjct:  180 QAVRAEYGLDAIAAAPNNLYGPRHPFPPEHSHVIPALIRRFHRAKLEGAGEVAVWGSGAAAREFTHVDDLAEAVVVLMERYSGEEHVNVGSGEEVTVRELAEAVRGVVGYEGVVAWDAARPEGVARRVVDSGRMRKLGWEPRVALRDGIQDLYRFYLRH 338          
BLAST of DY262656 vs. ExPASy Swiss-Prot
Match: Y4AF_RHISN (Uncharacterized protein y4aF OS=Rhizobium sp. (strain NGR234) GN=NGR_a00420 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.783e-45
Identity = 83/160 (51.88%), Postives = 118/160 (73.75%), Query Frame = 1
Query:    1 QAYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEHLNVGSGKEVSIKELAELVKEVVGFEGELVWDSSKPDGTPKKLMDSSKLAGLGWKAKIELKNGLADTYKWNLENV 480
            QAY+ QY  N IS MPTNLYGP D F   +SHV+PAL+R+ HEAK+     + +WG+G+P R+FL+ +D +DA+VF++  Y   EH+N+GSG E+SI ELA +V  VVGF+G++V+D+SKPDGTP+KL+ S +L  +GW+ K  L+ GLA +Y+  + NV
Sbjct:  152 QAYRKQYGANFISAMPTNLYGPRDKFDLNSSHVVPALIRKAHEAKIKDLGCLSIWGSGTPTRDFLYSEDCSDALVFLLKHYSETEHINIGSGGEISIIELAHIVCRVVGFKGDIVFDTSKPDGTPRKLLSSERLVSMGWRPKTSLELGLAKSYESFVSNV 311          
BLAST of DY262656 vs. ExPASy Swiss-Prot
Match: FCL_PONAB (GDP-L-fucose synthetase OS=Pongo abelii GN=TSTA3 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.354e-25
Identity = 67/165 (40.61%), Postives = 100/165 (60.61%), Query Frame = 1
Query:    1 QAYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEH--LNVGSGKEVSIKELAELVKEVVGFEGELVWDSSKPDGTPKKLMDSSKL-AGLGWKAKIELKNGLADTYKWNLENVKQ 486
            +AY  QY     + +PTN++GP+DNF+ E+ HVLP L+ + H AK +G+  + VWGTG P R+F++  DLA   ++++ EY+ +E   L+VG   EVSIKE AE V E + F GE+ +D++K DG  KK   +SKL   L        K  + +T  W  +N +Q
Sbjct:  155 RAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGS-ALTVWGTGKPRRQFIYSLDLAQLFIWVLREYNEVEPIILSVGEDDEVSIKEAAEAVVEAMDFHGEVTFDTTKSDGQFKKTASNSKLRTYLPDFRFTPFKQAVKETCAWFTDNYEQ 318          
BLAST of DY262656 vs. ExPASy Swiss-Prot
Match: FCL_HUMAN (GDP-L-fucose synthetase OS=Homo sapiens GN=TSTA3 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.354e-25
Identity = 67/165 (40.61%), Postives = 101/165 (61.21%), Query Frame = 1
Query:    1 QAYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEH--LNVGSGKEVSIKELAELVKEVVGFEGELVWDSSKPDGTPKKLMDSSKL-AGLGWKAKIELKNGLADTYKWNLENVKQ 486
            +AY  QY     + +PTN++GP+DNF+ E+ HVLP L+ + H AK +G+  + VWGTG+P R+F++  DLA   ++++ EY+ +E   L+VG   EVSIKE AE V E + F GE+ +D++K DG  KK   +SKL   L        K  + +T  W  +N +Q
Sbjct:  155 RAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGS-ALTVWGTGNPRRQFIYSLDLAQLFIWVLREYNEVEPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVTFDTTKSDGQFKKTASNSKLRTYLPDFRFTPFKQAVKETCAWFTDNYEQ 318          
BLAST of DY262656 vs. ExPASy Swiss-Prot
Match: NOLK_AZOC5 (Nodulation protein nolK OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=nolK PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 5.245e-25
Identity = 56/148 (37.84%), Postives = 89/148 (60.14%), Query Frame = 1
Query:   25 FNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGL-EHLNVGSGKEVSIKELAELVKEVVGFEGELVWDSSKPDGTPKKLMDSSKLAGLGWKAKIELKNGLADTYKW 465
            FN  + +  NLYG  DNF P  SH+LPA++ + H+A   G++ V +WG G+  REF+   D A  ++  ++  + +   +NVG GK++S+ E   LV  V+G+ GE V+D ++P G   KLMD + L  LGW  +  L+ G+  TY++
Sbjct:  156 FNYKTLIACNLYGVGDNFDPRRSHLLPAIIEKIHKASQCGSESVSIWGDGTARREFMFAYDFAKIIIKALEVPELIPSSMNVGVGKDLSVLEYYSLVARVIGWSGEFVYDLNRPVGMRSKLMDITHLTALGWVPERSLEGGIRSTYQY 303          
BLAST of DY262656 vs. ExPASy Swiss-Prot
Match: FCL_CRIGR (GDP-L-fucose synthetase OS=Cricetulus griseus GN=TSTA3 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.245e-25
Identity = 68/165 (41.21%), Postives = 100/165 (60.61%), Query Frame = 1
Query:    1 QAYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEH--LNVGSGKEVSIKELAELVKEVVGFEGELVWDSSKPDGTPKKLMDSSKL-AGLGWKAKIELKNGLADTYKWNLENVKQ 486
            +AY  Q+     + +PTN++GP+DNF+ E+ HVLP L+ + H AK NG+  + VWGTG P R+F++  DLA   ++++ EY+ +E   L+VG   EVSIKE AE V E + F GE+ +DS+K DG  KK   + KL A L        K  + +T  W  +N +Q
Sbjct:  155 RAYFQQHGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSNGS-ALTVWGTGKPRRQFIYSLDLARLFIWVLREYNEVEPIILSVGEEDEVSIKEAAEAVVEAMDFCGEVTFDSTKSDGQYKKTASNGKLRAYLPDFRFTPFKQAVKETCAWFTDNYEQ 318          
The following BLAST results are available for this feature:
BLAST of DY262656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
FCL1_ARATH3.960e-7379.38GDP-L-fucose synthase 1 OS=Arabidopsis thaliana GN... [more]
FCL1_ORYSJ6.755e-7379.38Probable GDP-L-fucose synthase 1 OS=Oryza sativa s... [more]
FCL2_ARATH8.823e-7379.01Putative GDP-L-fucose synthase 2 OS=Arabidopsis th... [more]
FCL_ECOLI9.823e-4853.57GDP-L-fucose synthetase OS=Escherichia coli (strai... [more]
FCL2_ORYSJ2.188e-4751.57Putative GDP-L-fucose synthase 2 OS=Oryza sativa s... [more]
Y4AF_RHISN7.783e-4551.88Uncharacterized protein y4aF OS=Rhizobium sp. (str... [more]
FCL_PONAB2.354e-2540.61GDP-L-fucose synthetase OS=Pongo abelii GN=TSTA3 P... [more]
FCL_HUMAN2.354e-2540.61GDP-L-fucose synthetase OS=Homo sapiens GN=TSTA3 P... [more]
NOLK_AZOC55.245e-2537.84Nodulation protein nolK OS=Azorhizobium caulinodan... [more]
FCL_CRIGR5.245e-2541.21GDP-L-fucose synthetase OS=Cricetulus griseus GN=T... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100CC11RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262656 ID=DY262656; Name=DY262656; organism=Citrus clementina; type=EST; length=754bp
CAGGCTTATCAGATTCAGTATAAATTCAATGCAATTTCTGGGATGCCCAC
GAATTTATATGGCCCCAATGATAATTTCCACCCCGAAAACTCCCACGTGT
TACCCGCTTTGATGAGGAGATTCCACGAAGCTAAGGTGAATGGAGCTAAG
GAAGTGGTGGTGTGGGGCACTGGCAGTCCGTTAAGGGAGTTCTTACACGT
TGATGATTTGGCTGATGCAGTGGTTTTCATGATGGACGAGTATGATGGAC
TTGAACATTTGAATGTGGGGAGTGGGAAGGAAGTGAGCATTAAAGAGTTG
GCGGAGTTGGTGAAGGAAGTAGTGGGATTTGAAGGAGAGCTTGTTTGGGA
TTCATCCAAGCCAGATGGAACGCCGAAAAAGCTGATGGATAGTTCTAAGC
TTGCCGGGTTGGGGTGGAAGGCAAAAATTGAGCTTAAAAATGGTCTTGCT
GATACTTATAAGTGGAACTTGGAGAATGTTAAGCAATGCTGGGTATTAAC
CTGGGTTCATTTTTGTGGTTGTTTTATTAAAATTTATGGGTTTCATTTTG
AAAAATAAGAAATTGATTGGGGGGCCTTTATGAATTAAAGGGTTGTTATA
ATTAAGGGAAAAGAAAAGGTGGAAAAAAATAATTGGGGAACCAAAATTTT
TTGGTTTGGAAATTGGAAAAAAAATAAACCAATTTTTTTTTTGGGGGTTT
TTTAAATTGGGGTTTTCTGGAGAAAAAAATCTTAAATTTTTTGTTTGTTT
ATCT
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