DY262662

Overview
NameDY262662
Unique NameDY262662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length971
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262662 vs. ExPASy Swiss-Prot
Match: ODPA_PORPU (Pyruvate dehydrogenase E1 component subunit alpha OS=Porphyra purpurea GN=pdhA PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 7.733e-49
Identity = 112/216 (51.85%), Postives = 137/216 (63.43%), Query Frame = 1
Query:  151 ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGNATGCCRGQGGSMHMFSKGNICLGVLLLLGRDFHLYWG-SIPPKYRREGLKE-ADCDLVNWHFLLMNLKHGPFFECLTWLLLEISPCFF-VEKNLWPMEGTI*GLFQFP-IFKKGPAFGIPGFSL*GRNFL 786
            +TK + L LYEDM+LGR+FEDMCAQMYY+GKMFGFVHLYNGQEAVSTG IKLL  +D V STYRDHVHALSKGVP++ VM+ELFG  TGC RG+GGSMH+FS  +  LG    +     +  G +    YR++ LKE  +  +    F      +G FFECL   +L   P  F VE N W +          P I KK  AFG+PG  + G + L
Sbjct:   19 LTKHKLLVLYEDMLLGRNFEDMCAQMYYKGKMFGFVHLYNGQEAVSTGVIKLLDSKDYVCSTYRDHVHALSKGVPSQNVMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIAEGIPVATGAAFQSIYRQQVLKEPGELRVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRSSSIPEIHKKAEAFGLPGIEVDGMDVL 234          
BLAST of DY262662 vs. ExPASy Swiss-Prot
Match: ODPA_PORYE (Pyruvate dehydrogenase E1 component subunit alpha OS=Porphyra yezoensis GN=pdhA PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.838e-48
Identity = 111/216 (51.39%), Postives = 134/216 (62.04%), Query Frame = 1
Query:  151 ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGNATGCCRGQGGSMHMFSKGNICLGVLLLLGRDFHLYWG-SIPPKYRREGLKEA-DCDLVNWHFLLMNLKHGPFFECLTWLLLEISPCFF-VEKNLWPMEGTI*GLFQFP-IFKKGPAFGIPGFSL*GRNFL 786
            + K   L LYEDM+LGR+FEDMCAQMYY+GKMFGFVHLYNGQEAVSTG IKLL   D V STYRDHVHALSKGVP++ VM+ELFG  TGC +G+GGSMH+FS  +  LG    +     +  G +    YR++ LKE  D  +    F      +G FFECL   +L   P  F VE N W +          P I KK  AFG+PG  + G + L
Sbjct:   21 LNKSNLLVLYEDMLLGRNFEDMCAQMYYKGKMFGFVHLYNGQEAVSTGVIKLLNPTDYVCSTYRDHVHALSKGVPSKNVMAELFGKETGCSKGRGGSMHIFSAPHNFLGGFAFIAEGIPVATGAAFQSIYRQQVLKETEDLRVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRSSSIPEIHKKAEAFGLPGIEVDGMDVL 236          
BLAST of DY262662 vs. ExPASy Swiss-Prot
Match: ODPA_RICCN (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia conorii GN=pdhA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 8.320e-27
Identity = 76/218 (34.86%), Postives = 116/218 (53.21%), Query Frame = 1
Query:  154 TKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGNATGCCRGQGGSMHMFSKGNICLGVLLLLGRDFHLYWG-SIPPKYRREGLKEADCDLVNWHFLLMN---LKHGPFFECLTWLLLEISP-CFFVEKNLWPMEGTI-*GLFQFPIFKKGPAFGIPGFSL*GRNFLE 789
            TK+E ++ ++DM+L R FE+ C Q+Y  G++ GF HLY GQEAV +    + +K DS +++YRDH H +  G   + V++EL G ATGC +G+GGSMH+F+  N   G   ++G    +  G +   KY          D  N  F  +    +  G  +E      L   P  + +E N + M  ++    F   ++KKG +FGI GF L G +F E
Sbjct:   11 TKEEYIKSFKDMLLLRRFEEKCGQLYGMGEIGGFCHLYIGQEAVISAIDMVKQKGDSTITSYRDHAHIILAGTEPKYVLAELMGRATGCSKGKGGSMHLFNVPNKFYGGHGIVGAQVPIGTGLAFVEKYN---------DTHNICFTFLGDGAVNQGQVYEAFNMAALWGLPVVYIIENNEYSMGTSVARSTFMRDLYKKGASFGIKGFQLDGMDFEE 219          
BLAST of DY262662 vs. ExPASy Swiss-Prot
Match: ODPA_RICPR (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia prowazekii GN=pdhA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.419e-26
Identity = 76/217 (35.02%), Postives = 113/217 (52.07%), Query Frame = 1
Query:  157 KQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGNATGCCRGQGGSMHMFSKGNICLGVLLLLGRDFHLYWG-SIPPKYRREGLKEADCDLVNWHFLLMN---LKHGPFFECLTWLLLEISP-CFFVEKNLWPMEGTI-*GLFQFPIFKKGPAFGIPGFSL*GRNFLE 789
            K+E ++ ++DM+L R FE+ C Q+Y  GK+ GF HLY GQEAV +    + KK DS +++YRDH H +  G   + V++EL G ATGC +G+GGSMH+F   N   G   ++G    +  G +   KY             N  F  +    +  G  +E      L   P  + +E N + M  ++    F   ++KKG +FGI GF L G +F E
Sbjct:   12 KEEYIKSFKDMLLLRRFEEKCGQLYGMGKIGGFCHLYIGQEAVISAVAMIKKKGDSTITSYRDHAHIILAGTEPKYVLAELMGRATGCSKGKGGSMHLFDIPNKFYGGHGIVGAQVPIGTGLAFAEKYNGTN---------NICFTFLGDGAVNQGQVYEAFNMASLWGLPIVYIIENNEYSMGTSVARSTFMCDLYKKGESFGIRGFQLDGMDFEE 219          
BLAST of DY262662 vs. ExPASy Swiss-Prot
Match: ODPA_RICBR (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia bellii (strain RML369-C) GN=pdhA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.419e-26
Identity = 76/217 (35.02%), Postives = 115/217 (53.00%), Query Frame = 1
Query:  157 KQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGNATGCCRGQGGSMHMFSKGNICLGVLLLLGRDFHLYWG-SIPPKYRREGLKEADCDLVNWHFLLMN---LKHGPFFECLTWLLLEISP-CFFVEKNLWPMEGTI-*GLFQFPIFKKGPAFGIPGFSL*GRNFLE 789
            K+E ++ ++DM+L R FE+ C Q+Y  G++ GF HLY GQEAV +    + +KEDS+V++YRDH H +  G   + V++EL G ATGC +G+GGSMH+F   N   G   ++G    +  G +   KY             N  F  +    +  G  +E      L   P  + +E N + M  ++    F   ++KKG +FGI GF L G +F E
Sbjct:   12 KEEYIKSFKDMLLLRRFEEKCGQLYGMGEIGGFCHLYIGQEAVISAVDMVKQKEDSMVTSYRDHAHIILAGTEPKYVLAELMGRATGCSKGKGGSMHLFDVPNKFYGGHGIVGAQVPIGTGLAFAEKYNGTN---------NICFTFLGDGAVNQGQVYEAFNMAALWGLPVVYIIENNEYSMGTSVARSTFMRDLYKKGESFGIKGFQLNGMDFEE 219          
BLAST of DY262662 vs. ExPASy Swiss-Prot
Match: ODPA_RICFE (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia felis GN=pdhA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.393e-26
Identity = 75/218 (34.40%), Postives = 114/218 (52.29%), Query Frame = 1
Query:  154 TKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGNATGCCRGQGGSMHMFSKGNICLGVLLLLGRDFHLYWG-SIPPKYRREGLKEADCDLVNWHFLLMN---LKHGPFFECLTWLLLEISP-CFFVEKNLWPMEGTI-*GLFQFPIFKKGPAFGIPGFSL*GRNFLE 789
            TK+E ++ ++DM+L R FE+ C Q+Y  G++ GF HLY GQEAV +    + +K DS +++YRDH H +  G   + V++EL G ATGC +G+GGSMH+F   N   G   ++G    +  G +   KY             N  F  +    +  G  +E      L   P  + +E N + M  ++    F   ++KKG +FGI GF L G +F E
Sbjct:   11 TKEEYIKSFKDMLLLRRFEEKCGQLYGMGEIGGFCHLYIGQEAVISAVDTVKQKGDSTITSYRDHAHIILAGTEPKYVLAELMGRATGCSKGKGGSMHLFDIPNKFYGGHGIVGAQVPIGTGLAFAEKYNGTN---------NICFTFLGDGAVNQGQVYEAFNMAALWGLPVVYIIENNEYSMGTSVARSTFMRDLYKKGESFGIKGFQLDGMDFEE 219          
BLAST of DY262662 vs. ExPASy Swiss-Prot
Match: ODPA_RICTY (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia typhi GN=pdhA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.201e-25
Identity = 75/217 (34.56%), Postives = 113/217 (52.07%), Query Frame = 1
Query:  157 KQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGNATGCCRGQGGSMHMFSKGNICLGVLLLLGRDFHLYWG-SIPPKYRREGLKEADCDLVNWHFLLMN---LKHGPFFECLTWLLLEISP-CFFVEKNLWPMEGTI-*GLFQFPIFKKGPAFGIPGFSL*GRNFLE 789
            K+E ++ ++DM+L R FE+ C Q+Y  G++ GF HLY GQEAV +    + KK DS +++YRDH H +  G   + V++EL G ATGC +G+GGSMH+F   N   G   ++G    +  G +   KY             N  F  +    +  G  +E      L   P  + +E N + M  ++    F   ++KKG +FGI GF L G +F E
Sbjct:   12 KEEYIKSFKDMLLLRRFEEKCGQLYGMGEIGGFCHLYIGQEAVISAVELIKKKGDSTITSYRDHAHIILAGTEPKYVLAELMGRATGCSKGKGGSMHLFDIPNKFYGGHGIVGAQVPIGTGLAFAEKYNGTN---------NICFTFLGDGAVNQGQVYEAFNMASLWGLPVVYIIENNEYSMGTSVSRSTFMRDLYKKGESFGIRGFQLDGMDFEE 219          
BLAST of DY262662 vs. ExPASy Swiss-Prot
Match: ODPA_RHIME (Pyruvate dehydrogenase E1 component subunit alpha OS=Rhizobium meliloti GN=pdhA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.243e-22
Identity = 73/210 (34.76%), Postives = 110/210 (52.38%), Query Frame = 1
Query:  154 TKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGNATGCCRGQGGSMHMFSKGNICLGVLLLLGRDFHLYWG-SIPPKYRREGLKEADCDLVNWHFLLMNLKHGPFFECLTWLLL-EISPCFFVEKNLWPMEGTI-*GLFQFPIFKKGPAFGIPGFSL*G 774
            +K++ L+ Y +M+L R FE+   Q+Y  G + GF HLY GQEAV  G    LK+ D V++ YRDH H L+ G+ AR VM+EL G   G  +G+GGSMHMFSK     G   ++G    L  G +   +YR       + ++   +F       G  +E      L ++   + VE N + M  ++     Q    ++G +FGIPG+ + G
Sbjct:   32 SKEDDLKAYREMLLIRRFEEKAGQLYGMGFIGGFCHLYIGQEAVVVGMQLALKEGDQVITGYRDHGHMLACGMSARGVMAELTGRRGGLSKGKGGSMHMFSKEKHFYGGHGIVGAQVSLGTGLAFANRYR------GNDNVSLAYFGDGAANQGQVYESFNMAALWKLPVIYIVENNRYAMGTSVSRASAQTDFSQRGASFGIPGYQVDG 235          
BLAST of DY262662 vs. ExPASy Swiss-Prot
Match: ODPA_ZYMMO (Pyruvate dehydrogenase E1 component subunit alpha OS=Zymomonas mobilis GN=pdhA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.121e-22
Identity = 77/215 (35.81%), Postives = 110/215 (51.16%), Query Frame = 1
Query:  157 KQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKK-EDSVVSTYRDHVHALSKGVPARAVMSELFGNATGCCRGQGGSMHMFSKGNICLGVLLLLGRDFHLYWG-SIPPKYRREGLKEADCDLVNWHFLLMNLKHGPFFECLTWLLLEISPCFFV-EKNLWPMEGTI-*GLFQFPIFKKGPAFGIPGFSL*GRNFLE 789
            ++E LE Y  M++ R FE+ C Q+Y  G + GF HLY GQEAV+ G    L+   DSV++ YR+H H L+ G+  + VM+EL G A+G   G+GGSMHMFS  +   G   ++G    L  G +   KYR +G     C     +F   +   G  +E      L   P  FV E N + M  +I        + ++G  FGIP   + G + LE
Sbjct:   36 REELLEFYRRMLMIRRFEERCGQLYGLGLIAGFCHLYIGQEAVAVGLQAALQPGRDSVITGYREHGHMLAYGIDPKIVMAELTGRASGISHGKGGSMHMFSTEHKFFGGNGIVGAQVPLGAGLAFAHKYRNDG----GCSAA--YFGDGSANQGQVYEAYNMAALWKLPVIFVIENNGYAMGTSIQRANAHTALSERGAGFGIPALVVDGMDVLE 244          
BLAST of DY262662 vs. ExPASy Swiss-Prot
Match: ACOA_BACSU (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha OS=Bacillus subtilis GN=acoA PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.052e-21
Identity = 71/220 (32.27%), Postives = 111/220 (50.45%), Query Frame = 1
Query:  151 ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGNATGCCRGQGGSMHMFSKGNICLGVLLLLGRDFHLYWGSIPPKYRREGLKEADC---DLVNWHFLLMNLKHGPFFECLTWLLLEISPCFFVEKNLWPMEGTI*GLFQF-----PIFKKGPAFGIPGFSL*GRNFL 786
            +T+++ L +Y+ M+  R FED   +++ +G + GFVHLY G+EAV+ G    L   DS+ ST+R H H ++KG     +M+E+FG ATG C+G+GGSMH+       LG   ++G  F L  GS      ++    + C   D  N          G F E L    +   P  FV +N    E T    F++      I  +  A+ +PG ++ G++ L
Sbjct:   11 LTEEKALWMYQKMLEIRGFEDKVHELFAQGVLPGFVHLYAGEEAVAVGVCAHLHDGDSITSTHRGHGHCIAKGCDLDGMMAEIFGKATGLCKGKGGSMHIADLDKGMLGANGIVGGGFTLACGSALTAKYKQTKNVSVCFFGDGAN--------NQGTFHEGLNLAAVWNLPVVFVAENNGYGEAT---PFEYASACDSIADRAAAYNMPGVTVDGKDIL 219          
The following BLAST results are available for this feature:
BLAST of DY262662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
ODPA_PORPU7.733e-4951.85Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_PORYE3.838e-4851.39Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RICCN8.320e-2734.86Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RICPR1.419e-2635.02Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RICBR1.419e-2635.02Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RICFE5.393e-2634.40Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RICTY1.201e-2534.56Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RHIME1.243e-2234.76Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_ZYMMO2.121e-2235.81Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ACOA_BACSU1.052e-2132.27Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100CD05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262662 ID=DY262662; Name=DY262662; organism=Citrus clementina; type=EST; length=971bp
AATTCCTTGTTTGATCCTCTCAAAACCGGTACTTCTTTCCTTGGATCCAC
TCACAAACTCCGTGTTAATTCTGTTCACTCGAATCAGGGCAATGTTCGCC
GTCGACTTCCCGTCGTTGCTGTCTCTGAGGTTGTTAAGGAGAAGAAGCTG
ATCACCAAGCAAGAAGGCTTAGAGCTATATGAAGATATGATCCTTGGCAG
ATCTTTTGAGGACATGTGCGCCCAGATGTACTACAGAGGGAAAATGTTCG
GGTTTGTTCACCTCTACAATGGTCAAGAAGCTGTGTCAACTGGATTTATT
AAGCTCTTGAAGAAAGAAGATTCTGTGGTGAGCACATACCGTGATCACGT
GCATGCCCTGAGTAAAGGGGTCCCTGCTCGTGCTGTGATGAGTGAGCTCT
TTGGCAATGCCACTGGTTGCTGCAGGGGCCAAGGTGGATCTATGCACATG
TTCTCAAAGGGCAACATCTGCTTGGGGGTTTTGCTTTTATTGGGGAGGGA
CTTCCATTTGTACTGGGGCAGCATTCCCCCCAAGTATAGGAGGGAGGGGT
TGAAGGAGGCTGACTGTGATCTTGTGAATTGGCATTTTTTGCTGATGAAC
TTGAAACATGGCCCGTTCTTTGAATGCTTAACATGGCTGCTTTTGGAAAT
TTCCCCTTGTTTTTTTGTGGAAAAAAATTTGTGGCCTATGGAAGGTACAA
TTTAAGGCCTCTTTCAATTCCCAATTTTTAAAAAGGGCCCCGCTTTTGGG
ATTCCCGGTTTTTCCCTTTAGGGGAGGAATTTTTTGGAGGGGAAGGAGAG
GGGAATAAAAGAGGAATTTAAAAAACCCAGAAAAGGGAAAAAGAAACCTC
TTTGGGGGGAAAAGGAAAAAAAAATTAACTGTTTTAAAAAAAACACACTT
TTTGGGCCCACCCCCCCCCAGAACTTTTTTCTGTCCCCCGCCCCCCACAA
GAAGAGGAGCTCCCCTTATTT
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