DY262668

Overview
NameDY262668
Unique NameDY262668
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1272
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262668_ssr53 microsatellite DY262668_ssr53:53..62. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY262668 vs. ExPASy Swiss-Prot
Match: GNL3_DICDI (Guanine nucleotide-binding protein-like 3 homolog OS=Dictyostelium discoideum GN=gnl3 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 8.092e-39
Identity = 111/282 (39.36%), Postives = 146/282 (51.77%), Query Frame = 1
Query:  262 DPGIPNDWPFKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLEDDDVSMLADAANG----------KEENFGEGTSTAFGKHRDNSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRANLGWKS--SKTAKPSNILQTSDCLXAETLIKLLKNYSRSHEIKKSITVGCYGSA*WLAGVG*SI---A*KNAXXXXXXXXXXXXXXWQKVH*NKMVNLLDWP 1062
            DPGIPN WPFK                                       D  SM ADA             K++   +G     GK  D+S + FY+E+ KVIE  DVIL+VLDARDP+G RC+++EKM+++   +K +VL+LNKIDLVPRE+V  WLKYLR   P +AFKCSTQ+Q+ NLG +         +++L +++ L AE L++LLKNYSRS  IK S+TVG  G       VG S    + K                 Q+VH +K V LLD P
Sbjct:   45 DPGIPNLWPFKEDMLNKIEQQKQKASEEKKNKKEKRRLEQMAEA----RRDIASMAADAKRRESEFQERQQLKQQQKQQGKFEKEGK--DSSLKQFYREVKKVIEAGDVILQVLDARDPMGCRCLEIEKMILERYTNKKIVLILNKIDLVPRENVLMWLKYLRNFYPTLAFKCSTQQQKRNLGQQGGIQPELASNDMLNSTESLGAEQLLQLLKNYSRSLNIKTSVTVGIIG----YPNVGKSSLINSLKRTRSVGVGATPGFTKFAQEVHLDKNVKLLDSP 316          
BLAST of DY262668 vs. ExPASy Swiss-Prot
Match: GNL3_CAEEL (Guanine nucleotide-binding protein-like 3 homolog OS=Caenorhabditis elegans GN=nst-1 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 7.645e-38
Identity = 81/171 (47.37%), Postives = 113/171 (66.08%), Query Frame = 1
Query:  421 SMLADAANGKEENFGEGTSTA----FGKHRDNSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLXAETLIKLLKNYSRSHEIKKSITVGCYG 921
            SM+A A+    E   +  S A    F    D + +A+  E+ K +E++DVI++VLDARDPLG+R   +E  V+K G  K LVLLLNKIDLVPRE+V+KWL+YLR + P +AFK STQEQ++N+G  +S      N  +TS C+ A+ ++K+L NY R+ +IK SI VG  G
Sbjct:  101 SMVAKASKQGTEFDKKVASAAEHEKFNTLDDKTIKAYASEVRKTVEIADVIIQVLDARDPLGSRSKSVEDQVLKGG--KRLVLLLNKIDLVPRENVQKWLEYLRGQFPTIAFKASTQEQKSNIGRFNSAIL---NNTETSKCVGADIVMKILANYCRNKDIKTSIRVGVVG 266          

HSP 2 Score: 38.1206 bits (87), Expect = 7.645e-38
Identity = 17/36 (47.22%), Postives = 25/36 (69.44%), Query Frame = 3
Query:  933 VGRSRLINSLKKCPVANVGATPGLTRSMAEGSLEQN 1040
            VG+S +INSLK+    NVG  PG+T+ + E  L++N
Sbjct:  270 VGKSSVINSLKRRKACNVGNLPGITKEIQEVELDKN 305          
BLAST of DY262668 vs. ExPASy Swiss-Prot
Match: GNL3_DROME (Guanine nucleotide-binding protein-like 3 homolog OS=Drosophila melanogaster GN=ns1 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.161e-35
Identity = 70/142 (49.30%), Postives = 94/142 (66.20%), Query Frame = 1
Query:  496 RDNSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLXAETLIKLLKNYSRSHEIKKSITVGCYG 921
            ++ S + ++KE  KVIE +DV+LEV+DARDPLGTRC ++E+ V  A  +K LVL+LNK DLVPRE++  W+KY R   P  AFK STQ+Q   LG +  +  K    +Q S C+ AE L+ +L NY R+  IK SI VG  G
Sbjct:  133 KEQSLKQYFKEFRKVIENADVVLEVVDARDPLGTRCNEVERAVRGAPGNKRLVLVLNKADLVPRENLNNWIKYFRRSGPVTAFKASTQDQANRLGRRKLREMKTEKAMQGSVCIGAELLMSMLGNYCRNKGIKTSIRVGVVG 274          

HSP 2 Score: 35.4242 bits (80), Expect = 1.161e-35
Identity = 17/34 (50.00%), Postives = 24/34 (70.59%), Query Frame = 3
Query:  933 VGRSRLINSLKKCPVANVGATPGLTRSMAEGSLE 1034
            VG+S +INSL +     VG+TPG+T+SM E  L+
Sbjct:  278 VGKSSIINSLTRGRSCMVGSTPGVTKSMQEVELD 311          
BLAST of DY262668 vs. ExPASy Swiss-Prot
Match: GNL3L_HUMAN (Guanine nucleotide-binding protein-like 3-like protein OS=Homo sapiens GN=GNL3L PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.209e-34
Identity = 90/188 (47.87%), Postives = 115/188 (61.17%), Query Frame = 1
Query:  511 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRANLGWKSSKTAKPS-NILQTSDCLXAETLIKLLKNYSRSHEIKKSITVGCYGSA*WLAGVG*SI---A*KNAXXXXXXXXXXXXXXWQKVH*NKMVNLLDWP 1062
            +A+YKE  KV+E SDVILEVLDARDPLG RC  ME+ V++A  +K LVL+LNKIDLVP+E VEKWL YLR ELP VAFK STQ Q  NL   S    + S ++L++  C  AE L+++L NY R  E++  I VG  G    L  VG S    + K +               Q+V+ +K + LLD P
Sbjct:  122 KAYYKEFRKVVEYSDVILEVLDARDPLGCRCFQMEEAVLRAQGNKKLVLVLNKIDLVPKEVVEKWLDYLRNELPTVAFKASTQHQVKNLNRCSVPVDQASESLLKSKACFGAENLMRVLGNYCRLGEVRTHIRVGVVG----LPNVGKSSLINSLKRSRACSVGAVPGITKFMQEVYLDKFIRLLDAP 305          
BLAST of DY262668 vs. ExPASy Swiss-Prot
Match: GNL3L_BOVIN (Guanine nucleotide-binding protein-like 3-like protein OS=Bos taurus GN=GNL3L PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.579e-34
Identity = 89/188 (47.34%), Postives = 116/188 (61.70%), Query Frame = 1
Query:  511 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRANLGWKSSKTAKPS-NILQTSDCLXAETLIKLLKNYSRSHEIKKSITVGCYGSA*WLAGVG*SI---A*KNAXXXXXXXXXXXXXXWQKVH*NKMVNLLDWP 1062
            +A+YKE  KV+E SDVILEVLD+RDPLG RC  ME+ V++A  +K LVL+LNKIDLVP+E VEKWL+YLR ELP VAFK STQ Q  NL   S    + S ++L++  C  AE L+++L NY R  E++  I VG  G    L  VG S    + K +               Q+V+ +K + LLD P
Sbjct:  115 KAYYKEFHKVVEYSDVILEVLDSRDPLGCRCFQMEETVLRAEGNKKLVLVLNKIDLVPKEVVEKWLEYLRNELPTVAFKASTQHQVKNLNRCSVPVDQASESLLKSKACFGAENLMRVLGNYCRLGEVRTHIRVGVVG----LPNVGKSSLINSLKRSRACSVGAVPGVTKFMQEVYLDKFIRLLDAP 298          
BLAST of DY262668 vs. ExPASy Swiss-Prot
Match: GNL3L_MOUSE (Guanine nucleotide-binding protein-like 3-like protein OS=Mus musculus GN=Gnl3l PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 7.336e-32
Identity = 85/189 (44.97%), Postives = 111/189 (58.73%), Query Frame = 1
Query:  511 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRAN--LGWKSSKTAKPSNILQTSDCLXAETLIKLLKNYSRSHEIKKSITVGCYGSA*WLAGVG*SI---A*KNAXXXXXXXXXXXXXXWQKVH*NKMVNLLDWP 1062
            +A+YKE  KV+E SDVILEVLDARDPLG RC  ME+ V++A  +K LVL+LNKIDLVP+E VEKWL+YL  ELP VAFK STQ  +       K        ++L++  C  AE L+++L NY R  E++  I VG  G    L  VG S    + K +               Q+V+ +K + LLD P
Sbjct:  115 KAYYKEFRKVVEYSDVILEVLDARDPLGCRCFQMEETVLRAEGNKKLVLVLNKIDLVPKEIVEKWLEYLLNELPTVAFKASTQHHQVKNLTRCKVPVDQASESLLKSRACFGAENLMRVLGNYCRLGEVRGHIRVGVVG----LPNVGKSSLINSLKRSRACSVGAVPGVTKFMQEVYLDKFIRLLDAP 299          
BLAST of DY262668 vs. ExPASy Swiss-Prot
Match: GNL3_HUMAN (Guanine nucleotide-binding protein-like 3 OS=Homo sapiens GN=GNL3 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.367e-29
Identity = 64/142 (45.07%), Postives = 90/142 (63.38%), Query Frame = 1
Query:  496 RDNSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLXAETLIKLLKNYSRSHEIKKSITVGCYG 921
            + NS + + +EL KVIE SDV+LEVLDARDPLG RC  +E+ ++++G  K LVL+LNK DLVP+E++E WL YL++ELP V F+ ST+ +      K  K  K +   ++  C   E L KLL  +  +    K+I VG  G
Sbjct:  123 KQNSKKLYCQELKKVIEASDVVLEVLDARDPLGCRCPQVEEAIVQSG-QKKLVLILNKSDLVPKENLESWLNYLKKELPTVVFRASTKPKDKGKITKRVKAKKNAAPFRSEVCFGKEGLWKLLGGFQET--CSKAIRVGVIG 261          

HSP 2 Score: 35.8094 bits (81), Expect = 2.367e-29
Identity = 17/28 (60.71%), Postives = 22/28 (78.57%), Query Frame = 3
Query:  933 VGRSRLINSLKKCPVANVGATPGLTRSM 1016
            VG+S +INSLK+  + NVG + GLTRSM
Sbjct:  265 VGKSSIINSLKQEQMCNVGVSMGLTRSM 292          
BLAST of DY262668 vs. ExPASy Swiss-Prot
Match: GNL3_XENLA (Guanine nucleotide-binding protein-like 3 OS=Xenopus laevis GN=gnl3 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 6.802e-29
Identity = 66/146 (45.21%), Postives = 92/146 (63.01%), Query Frame = 1
Query:  490 KHRDNSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLXAETLIKLLKNYSRSHEIKKSITVGCYGSA 927
            K  D+ D    +++ KV+E SDVI+EVLDARDPLG+RC   E++V+K+ P+K L+LLLNK DLVPRE VEKWL+ L  ELP V F+C  Q Q  +   K  K    ++++    C   + L+K+L +   SH   ++I VG  G A
Sbjct:  114 KTPDDPDVVLCRQVNKVLEQSDVIVEVLDARDPLGSRCSQAEEVVLKS-PNKRLLLLLNKSDLVPREMVEKWLQVLSAELPTVPFRCVAQIQDKSEKKKKKKVPVSADLVTDPKCPGGQVLLKILHSLCPSH--NEAIKVGVIGFA 256          

HSP 2 Score: 33.113 bits (74), Expect = 6.802e-29
Identity = 16/34 (47.06%), Postives = 23/34 (67.65%), Query Frame = 3
Query:  933 VGRSRLINSLKKCPVANVGATPGLTRSMAEGSLE 1034
            VG+S +INSLK+  V NVG + G T+ + E  L+
Sbjct:  258 VGKSSVINSLKQSHVCNVGPSKGTTKFLQEVRLD 291          
BLAST of DY262668 vs. ExPASy Swiss-Prot
Match: GNL3_RAT (Guanine nucleotide-binding protein-like 3 OS=Rattus norvegicus GN=Gnl3 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.612e-27
Identity = 65/142 (45.77%), Postives = 86/142 (60.56%), Query Frame = 1
Query:  496 RDNSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLXAETLIKLLKNYSRSHEIKKSITVGCYG 921
            + N  +   +EL KVIE SD++LEVLDARDPLG RC  +E+ V+++G  K LVL+LNK DLVP+E++E WL YL +ELP V FK ST  +     +K  K   P    Q+  C   E L KLL  + +S    K + VG  G
Sbjct:  121 KQNPKKLHCQELKKVIEASDIVLEVLDARDPLGCRCPQVEEAVIQSGCKK-LVLVLNKSDLVPKENLENWLTYLNKELPTVVFKASTNLKNRKKTFKIKKKVVP---FQSKLCCGKEALWKLLGGFQQS--CGKGVQVGVVG 256          

HSP 2 Score: 34.2686 bits (77), Expect = 1.612e-27
Identity = 16/28 (57.14%), Postives = 22/28 (78.57%), Query Frame = 3
Query:  933 VGRSRLINSLKKCPVANVGATPGLTRSM 1016
            VG+S +INSLK+  + +VG + GLTRSM
Sbjct:  260 VGKSSIINSLKQERICSVGVSMGLTRSM 287          
BLAST of DY262668 vs. ExPASy Swiss-Prot
Match: GNL3_MOUSE (Guanine nucleotide-binding protein-like 3 OS=Mus musculus GN=Gnl3 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 3.556e-27
Identity = 65/143 (45.45%), Postives = 86/143 (60.14%), Query Frame = 1
Query:  496 RDNSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQ-EQRANLGWKSSKTAKPSNILQTSDCLXAETLIKLLKNYSRSHEIKKSITVGCYG 921
            + N  +   +EL KVIE SD++LEVLDARDPLG RC  +E+ V+++G  K L+L+LNK DLVP+E++E WL YL +ELP V FK ST  + R     K  K        Q+  C   E L KLL ++ +S    K I VG  G
Sbjct:  121 KQNPKKLHCQELKKVIEASDIVLEVLDARDPLGCRCPQIEEAVIQSG-SKKLILVLNKSDLVPKENLENWLNYLNKELPTVVFKASTNLKNRKTFKIKKKKVVP----FQSKICCGKEALWKLLGDFQQS--CGKDIQVGVIG 256          

HSP 2 Score: 34.6538 bits (78), Expect = 3.556e-27
Identity = 17/28 (60.71%), Postives = 22/28 (78.57%), Query Frame = 3
Query:  933 VGRSRLINSLKKCPVANVGATPGLTRSM 1016
            VG+S +INSLK+  + NVG + GLTRSM
Sbjct:  260 VGKSSVINSLKQEWICNVGISMGLTRSM 287          
The following BLAST results are available for this feature:
BLAST of DY262668 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
GNL3_DICDI8.092e-3939.36Guanine nucleotide-binding protein-like 3 homolog ... [more]
GNL3_CAEEL7.645e-3847.37Guanine nucleotide-binding protein-like 3 homolog ... [more]
GNL3_DROME1.161e-3549.30Guanine nucleotide-binding protein-like 3 homolog ... [more]
GNL3L_HUMAN1.209e-3447.87Guanine nucleotide-binding protein-like 3-like pro... [more]
GNL3L_BOVIN1.579e-3447.34Guanine nucleotide-binding protein-like 3-like pro... [more]
GNL3L_MOUSE7.336e-3244.97Guanine nucleotide-binding protein-like 3-like pro... [more]
GNL3_HUMAN2.367e-2945.07Guanine nucleotide-binding protein-like 3 OS=Homo ... [more]
GNL3_XENLA6.802e-2945.21Guanine nucleotide-binding protein-like 3 OS=Xenop... [more]
GNL3_RAT1.612e-2745.77Guanine nucleotide-binding protein-like 3 OS=Rattu... [more]
GNL3_MOUSE3.556e-2745.45Guanine nucleotide-binding protein-like 3 OS=Mus m... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA100CD11RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262668 ID=DY262668; Name=DY262668; organism=Citrus clementina; type=EST; length=1272bp
CCTGCCTTCATGAAAAACCCTAAAGCTGTCAGCAAAGACATAACCCAACA
TTACACACACACTTGCCCCTTCTCCCTCAGAAGACTTGCATAGGCCCTTT
ACTAAGAAACCAAGATGGTAAAGAAGAGCAAAAAGAGTAAGAGTAAGAGA
GTTCCGTTGCGTAAGAAATACAAGATTATAAAGAAAGTAAAAGAGCACCA
CAAAAAGAAGGCCAAGGAAGCCAAGAAGCTCAAGTTGAGCGGCAAGCGAA
AGGTAGAGAAGGACCCTGGTATCCCCAATGACTGGCCATTCAAGGAACAA
GAGCTCAAGGCCCTCGAAGCCCGCCGTGCTCGTGCTCTCGAGGAGTTGGA
GCAGAAGAAAGCCGCGCGCAAGGAGAGGGCTCAAAAAAGGAAGCTGGGTT
TACTAGAAGATGATGATGTCTCCATGTTGGCAGATGCGGCCAATGGGAAA
GAAGAAAATTTTGGGGAGGGAACAAGCACTGCATTTGGCAAACATCGGGA
TAACTCAGATAGAGCTTTCTATAAGGAGTTGGTTAAAGTCATTGAAGTAT
CAGATGTTATCTTGGAAGTTCTTGATGCTCGGGATCCTCTGGGAACTCGT
TGCATTGATATGGAAAAGATGGTGATGAAAGCCGGCCCTGACAAGCACTT
AGTGTTGCTACTGAATAAAATTGATCTTGTCCCACGAGAATCTGTGGAAA
AGTGGCTCAAGTATCTTAGGGAGGAATTGCCTGCTGTTGCTTTTAAGTGC
AGCACCCAAGAGCAACGAGCAAACTTAGGGTGGAAATCCTCAAAGACAGC
AAAACCCAGCAATATTTTGCAAACCAGTGATTGCCTTGNAGCTGAGACTC
TTATTAAATTGTTGAAAAACTACTCAAGAAGTCATGAGATCAAGAAGTCT
ATCACGGTGGGGTGTTATGGGTCTGCCTAATGGTTGGCAGGAGTAGGTTA
ATCAATAGCTTGAAAAAATGCCCTGTTGCAAATGTTGGGGCTACCCCTGG
GTTAACCAGGTCAATGGCAGAAGGTTCATTAGAACAAAATGGTTAATTTG
TTGGACTGGCCCTGGTGTTGTAAGGCTTAATTCGGGGAAAAATGGATGGC
ATCCTAGGTTCTTTAAAAACTGCCAAAGGGATTGGAAAAATTAAAAGGAT
CCCTTTGGGTCCTGGGAAAGGAAAATTTCCCACCCCTTTGCCCCTGGCCA
TCCTGGTTGGAAAATCCCAAAAAAAAACCTCCCCCCCGTCTTTTGAATTT
CTTTTTGGAGAAACAATTTTCG
back to top