DY262678

Overview
NameDY262678
Unique NameDY262678
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length998
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13572 contig Ccv1_Contig13572:105..1073. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY262678 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 407.142 bits (1045), Expect = 7.922e-113
Identity = 196/268 (73.13%), Postives = 223/268 (83.21%), Query Frame = 2
Query:   35 SHFFGTRIHGAVVKQRSGKFQARXXXXXXXXXXXXXXXPTR----DSDRLVWFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATFN 826
            S  FG RI     +  +G+ QAR                +R    D DRLVWFPGA PPEWLDG+M+GDRGFDP GLGKP EYLQYDFD LDQNLAKN  G+++G+I +S E++PTP QPYTEVFG+QRFRECELIHGRWAMLGTLGAIAVEALTG+AWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEV+V+GYIE+QRN+ELDP KR+YPGGYFDPLGLA+DP KL+ L+LAEIKH+RLAMVAFLIF +QAAFTGKGP+SF+ATFN
Sbjct:   10 SGIFGIRIQDP--RPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLATFN 275          
BLAST of DY262678 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 2.167e-94
Identity = 173/269 (64.31%), Postives = 205/269 (76.21%), Query Frame = 2
Query:   35 SHFFGTRIHGAVVKQRSGKFQARXXXXXXXXXXXXXXXPTRDSDRLVWFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATFNQ*PI 838
            S   GTR+   +    SG+F A                 T  +DR +W+PGA  P+WLDG++VGD GFDP GLGKP EYLQ+D DSLDQNLAKN  G+++G  T++ + + TP QPY+EVFG+QRFRECELIHGRWAML TLGA++VE LTGV WQDAGKVELV+GSSYLGQPLPFS++TLIWIEV+VIGYIE+QRNAELD  KRLYPGG +FDPLGLA+DP K   LQLAEIKHARLAMVAFL F +QAA TGKGP++  AT    P+
Sbjct:   12 SSIMGTRVAPGI-HPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPL 279          
BLAST of DY262678 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 341.658 bits (875), Expect = 4.088e-93
Identity = 169/227 (74.45%), Postives = 191/227 (84.14%), Query Frame = 2
Query:  161 SDRLVWFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATFNQ*PI 838
            SDR +WFPGA  PE+LDG++VGD GFDP GLGKP EYLQ+D DSLDQNLAKN  GE++G  T++ + + TP QPY+EVFGLQRFRECELIHGRWAML TLGAI VE LTGV WQDAGKVELV+GSSYLGQPLPFS++TLIWIEV+VIGYIE+QRNAELD  KRLYPGG +FDPLGLASDP K   LQLAEIKHARLAMV FL F +QAA TGKGP++  AT    P+
Sbjct:   50 SDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPL 276          
BLAST of DY262678 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 248.825 bits (634), Expect = 3.606e-65
Identity = 126/220 (57.27%), Postives = 156/220 (70.91%), Query Frame = 2
Query:  173 VWFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVI--TDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLAS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATF 823
            +W P  T PEWLDG++ GDRGFDPLGL KP+E++    D  DQN AKN+ G +  ++  T         L PY+EVFGL RFRECELIHGRWAML  LGA+  EA TGV+W +AGKVEL +G+SY G  LPFS+T LIWIEVI++G  E+ RN+E +P KR YPGG FDPL LAS D  +   L+ AEIKHARLAMV+F  +G+QA  TG+G +  +A F
Sbjct:   52 LWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVEL-DGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLAKF 270          
BLAST of DY262678 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 7.589e-31
Identity = 82/219 (37.44%), Postives = 115/219 (52.51%), Query Frame = 2
Query:  176 WFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGI-QAAFTGKGPISFVAT 820
            W PG   P +LDG+  GD GFD LGLG+                                               L+R++E ELIH RWAML   G I  EAL    W  A +   + G  ++YLGQP+P+ +L T++ IE + I ++E+QR+ E D  K+ YPGG FDPLG + DP K E L++ EIK+ RLA++A + F + Q+A+ G GP+  +AT
Sbjct:   49 WMPGQPRPSYLDGSAPGDFGFDSLGLGEVPA-------------------------------------------NLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLAT 224          
BLAST of DY262678 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.294e-30
Identity = 85/219 (38.81%), Postives = 112/219 (51.14%), Query Frame = 2
Query:  176 WFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGK-VELVEG-SSYLGQPLPF-SLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGI-QAAFTGKGPISFVAT 820
            WFPG   P  LDG+  GD GFDPLGL    E                                             +RF+E E+ H RWAML   G +  EAL    W  A +   L +G ++YLG P+P+ +L T++ IE + I + E QR  E DP K+ YPGG FDPLG + DP K E L+L EIK+ RLAM+AF+ F + Q+A+ G GP+  +AT
Sbjct:   48 WFPGQPRPAHLDGSSPGDFGFDPLGLATVPE-------------------------------------------NFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLAT 223          
BLAST of DY262678 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 9.600e-26
Identity = 84/241 (34.85%), Postives = 114/241 (47.30%), Query Frame = 2
Query:  158 DSDRLVWFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGLAS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 805
            D DR +WFPG+TPPEWLDG++ GD GFDPLGLG   E L+++                                            + EL+H RWAMLG  G    E LT +      +W  AG+ E    +           TTL  IE+++IG+ E +R A++        DP+    +L      YPGG +FDPLG  S  P K++ L+  EIK+ RLAM+A +    Q  +TG GPI
Sbjct:   62 DPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWN-------------------------------------------AQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDT-----------TTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 248          
BLAST of DY262678 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.386e-24
Identity = 83/236 (35.17%), Postives = 109/236 (46.19%), Query Frame = 2
Query:  197 PEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRL----------------------YPGG-YFDPLGLAS---------DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 805
            PEWLDG++ GD GFDPLGLGK   +L++                                           +RE ELIHGRWAML  LG    +A TG+ W +AG        +  G   PFS  TL+  +++++G++E +R  +  DP  +                       YPGG +FDPL LA          D  KLE L+LAEIKHARLAM+A LIF  +A   GK P+
Sbjct:   73 PEWLDGSLPGDFGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAG--------ADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEAG-QGKTPL 256          
BLAST of DY262678 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.365e-24
Identity = 82/230 (35.65%), Postives = 110/230 (47.83%), Query Frame = 2
Query:  197 PEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQPLPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATFNQ*PIS*NFM 853
            PE+L+G + GD G+DP GLGK  E           N AK                                ++  ELIH RWAMLG  G I  EAL            W   G + L++G++  Y G+ +P +L   +  EV+++G  EY R    LD   +L+PGG FDPLGLA DP +   L++ EIK+ RLAM A L F IQA  TG+GP+  +A     P   N +
Sbjct:   82 PEYLNGEVAGDYGYDPFGLGKKPE-----------NFAK--------------------------------YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLL 267          
BLAST of DY262678 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 3.088e-24
Identity = 81/241 (33.61%), Postives = 113/241 (46.89%), Query Frame = 2
Query:  158 DSDRLVWFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGLAS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 805
            D DR +WFPG+TPP WLDG++ GD GFDPLGL    E L+++                                           ++ EL+H RWAMLG  G    E LT +      +W  AG+ E    +           TTL  +E+++IG+ E +R A++        DP+    +L      YPGG +FDPLG  S  P K++ L+  EIK+ RLAM+A +    Q  +TG GPI
Sbjct:   62 DPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWN-------------------------------------------QQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDT-----------TTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 248          
The following BLAST results are available for this feature:
BLAST of DY262678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
CB4C_ARATH7.922e-11373.13Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB4A_ARATH2.167e-9464.31Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH4.088e-9374.45Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB29_CHLRE3.606e-6557.27Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB11_SOLLC7.589e-3137.44Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB121_HORVU1.294e-3038.81Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB12_PETHY9.600e-2634.85Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB4_SPIOL1.386e-2435.17Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB26_ARATH2.365e-2435.65Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB12_SOLLC3.088e-2433.61Chlorophyll a-b binding protein 7, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100CE10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262678 ID=DY262678; Name=DY262678; organism=Citrus clementina; type=EST; length=998bp
ATCAGCGATGGCCACCACCACTACAGCAGCAGCATCACATTTCTTCGGGA
CGAGAATTCATGGGGCTGTCGTGAAACAAAGATCGGGAAAATTCCAAGCC
AGGTTCAGCTTTCGCAAGAAAAAATCCCCACCAGCCAAAAAGGCCAGGCC
TACACGAGACTCCGACCGGCTTGTCTGGTTCCCCGGCGCCACCCCGCCGG
AATGGCTCGACGGGACAATGGTGGGTGACCGTGGGTTCGACCCGTTGGGG
CTGGGGAAGCCAACAGAGTACTTGCAGTATGATTTTGACTCGTTGGATCA
GAACTTGGCCAAGAACGATGTCGGCGAGCTTCTCGGAGTGATTACTGATT
CCGGGGAGCTGCAGCCGACGCCGCTGCAGCCGTACACGGAGGTATTTGGG
CTGCAGAGGTTTAGAGAATGTGAGCTGATTCATGGAAGGTGGGCCATGTT
GGGTACCCTTGGCGCCATTGCTGTTGAAGCTCTCACTGGTGTCGCATGGC
AGGATGCTGGAAAGGTGGAGCTGGTGGAGGGTTCATCTTATCTTGGCCAA
CCACTTCCATTTTCATTAACAACATTGATTTGGATTGAAGTTATTGTGAT
TGGGTACATAGAATATCAAAGAAATGCAGAGCTTGATCCAGTGAAAAGAC
TATACCCTGGTGGGTATTTTGATCCTCTTGGCTTGGCCTCAGATCCTGGG
AAGCTTGAAAATCTTCAATTGGCTGAAATCAAGCACGCTCGTCTAGCAAT
GGTAGCATTTTTAATCTTTGGAATCCAGGCTGCTTTTACTGGCAAAGGGC
CCATCAGCTTTGTGGCTACATTTAACCAGTGACCCATTTCATAAAATTTC
ATGCCTTGGGTTCTCTTAATTAAGTAATTGTAAAATTCAATATCAATACT
TCACTATGGATGCTGCTACTTTTATATAATTATTGTATGTTATGTACTTG
GTCAGCCCAATTTCATATGTAAATCACTTTTCTTTTGAAAAAAAAAAA
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