DY262690

Overview
NameDY262690
Unique NameDY262690
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1308
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2346 contig Ccv1_Contig2346:1..1308. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY262690 vs. ExPASy Swiss-Prot
Match: Y5880_ARATH (BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 2.202e-47
Identity = 96/206 (46.60%), Postives = 138/206 (66.99%), Query Frame = 2
Query:  305 NKKKELLSTAMKRTSEWIFSQEIPSDVTVHVGGTSFSLHKFPLVSKCGYIRKLVSVSSEADLSVIEIPDVPGGAEAFELAAKFCYGINFEINTENVAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVALTSLTGAVTVLHKSQGLLPIAEKVKLVGQCIDAIAYIACKENQFSGSGRAESGTDNAI--SDMVSHPKTIVDWWAKD 916
            ++K  L  ++ +  SEWIF +++PSD+T+ V G +F+LHKFPLVS+ G IR++V+   ++D+S +E+ ++PGGAE FELAAKFCYGINFEI + NVA L CV++YLEMTE+Y+  NL  R E YL  +   +L   V VL +S+ LLP+A+++ ++G+CIDAIA  AC E   S   R E  +   +  S  V       DWW +D
Sbjct:   20 HQKLSLAKSSRQSCSEWIF-RDVPSDITIEVNGGNFALHKFPLVSRSGRIRRIVAEHRDSDISKVELLNLPGGAETFELAAKFCYGINFEITSSNVAQLFCVSDYLEMTEEYSKDNLASRTEEYLESIVCKNLEMCVQVLKQSEILLPLADELNIIGRCIDAIASKACAEQIASSFSRLEYSSSGRLHMSRQVKSSGDGGDWWIED 224          
BLAST of DY262690 vs. ExPASy Swiss-Prot
Match: RPT2_ARATH (Root phototropism protein 2 OS=Arabidopsis thaliana GN=RPT2 PE=1 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 4.152e-46
Identity = 85/167 (50.90%), Postives = 121/167 (72.46%), Query Frame = 2
Query:  323 LSTAMKRTSEWIFSQEIPSDVTVHVGGTSFSLHKFPLVSKCGYIRKLVSVSSEADLSVIEIPDVPGGAEAFELAAKFCYGINFEINTENVAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVALTSLTGAVTVLHKSQGLLPIAEKVKLVGQCIDAIAYIACKENQF 823
            +S+++ RT +W+FSQ+IP+DV V VG  +FSLHKF LV+K  YIRKL+  S ++D++ I + D+PGG E FE AAKFCYG+NFEI  +NVA L C AE+L+MT+ Y   NL GR + +L++VAL+SL+GA+ VL   + LLPI+  + +V +C+D +   AC E  F
Sbjct:   14 MSSSLARTGQWVFSQDIPTDVVVEVGEANFSLHKFMLVAKSNYIRKLIMESKDSDVTRINLSDIPGGPEIFEKAAKFCYGVNFEITVQNVAALHCAAEFLQMTDKYCDNNLAGRTQDFLSQVALSSLSGAIVVLKSCEILLPISRDLGIVRRCVDVVGAKACNEAMF 180          
BLAST of DY262690 vs. ExPASy Swiss-Prot
Match: RPT3_ARATH (Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.133e-35
Identity = 73/172 (42.44%), Postives = 116/172 (67.44%), Query Frame = 2
Query:  341 RTSEWIFSQEIPSDVTVHVGGTSFSLHKFPLVSKCGYIRKLVSVSSEADLSVIEIPDVPGGAEAFELAAKFCYGINFEINTENVAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVALTSLTGAVTVLHKSQGLLPIAEKVKLVGQCIDAIAYIAC---KENQFSGSGRAES 847
            R   W  + +IPSD+ V +G  +F LHK+PL+S+ G + +L+  S + D +++ + D+PGG EAFELA+KFCYG+  ++   N++GLRC AEYLEMTED   GNL+ + EA+L+ V L+S   ++ VL   + L P AE +++V +C ++IA+ AC   K  +++ +G+A S
Sbjct:   41 RGQSWFVATDIPSDLLVKIGDMNFHLHKYPLLSRSGKMNRLIYESRDPDPTILILDDLPGGPEAFELASKFCYGVPVDLTATNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSILVLKSCEKLSPWAENLQIVRRCSESIAWKACSNPKGIRWAYTGKAPS 212          
BLAST of DY262690 vs. ExPASy Swiss-Prot
Match: Y1044_ARATH (BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 1.061e-33
Identity = 78/210 (37.14%), Postives = 116/210 (55.24%), Query Frame = 2
Query:  326 STAMKRTSE-WIFSQEIPSDVTVHVGGTSFSLHKFPLVSKCGYIRKLVSVSSEA--DLSVIEIPDVPGGAEAFELAAKFCYGINFEINTENVAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVALTSLTGAVTVLHKSQGLLPIAEKVKLVGQCIDAIAYIACKENQFSGSGRAESGTD----------NAISDMVSHPKTIVDWWAKD 916
            S A +R  + W  +  +PSD+ V VG  SF LHKFPL+S+ G + + ++ +S+   D  +IEI D+PGG + FEL AKFCYG+  E+   NV  LRC AE+LEMTE++  GNL+ + E + N+V L S   ++  LH    +L  A+++ +  +CI+++A  A  +    G    E G            N IS       T  DWW +D
Sbjct:   10 SDAFQRQGQAWFCTTGLPSDIVVEVGEMSFHLHKFPLLSRSGVMERRIAEASKEGDDKCLIEISDLPGGDKTFELVAKFCYGVKLELTASNVVYLRCAAEHLEMTEEHGEGNLISQTETFFNQVVLKSWKDSIKALHSCDEVLEYADELNITKKCIESLAMRASTDPNLFGWPVVEHGGPMQSPGGSVLWNGISTGARPKHTSSDWWYED 219          
BLAST of DY262690 vs. ExPASy Swiss-Prot
Match: NPH3_ORYSJ (Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.385e-33
Identity = 73/186 (39.25%), Postives = 117/186 (62.90%), Query Frame = 2
Query:  335 MKRTSEWIFSQEIPSDVTVHVGGTSFSLHKFPLVSKCGYIRKLVSVSSEAD---------LSVIEIPDVPGGAEAFELAAKFCYGINFEINTENVAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVALTSLTGAVTVLHKSQGLLPIAEKVKLVGQCIDAIAYIACKENQ-----FSGSGRAESG 850
            ++R   W  + +IPSD+ V VG  +F LHK+P++S+ G + + V  SS AD         ++V+E+ D+PGGA +FELAA+F YG+  ++   N++GLRC AEYLEMTE+   GNL+ + EA+L+ V L+S   ++ VL   + L P AE +++V +C ++IA+ AC   +     ++G+G    G
Sbjct:   37 VRRDRSWYVNSDIPSDLLVKVGDVNFYLHKYPMISRSGRMSRAVYESSAADEAEADAAAAVAVVEMGDLPGGAGSFELAARFSYGMAVDLTAANISGLRCAAEYLEMTEEMEEGNLIFKTEAFLSYVVLSSWRDSIAVLKSCEALSPWAENLQIVRRCSESIAWKACANPRGVRWAYTGAGAGSGG 222          
The following BLAST results are available for this feature:
BLAST of DY262690 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
Y5880_ARATH2.202e-4746.60BTB/POZ domain-containing protein At5g48800 OS=Ara... [more]
RPT2_ARATH4.152e-4650.90Root phototropism protein 2 OS=Arabidopsis thalian... [more]
RPT3_ARATH1.133e-3542.44Root phototropism protein 3 OS=Arabidopsis thalian... [more]
Y1044_ARATH1.061e-3337.14BTB/POZ domain-containing protein At1g30440 OS=Ara... [more]
NPH3_ORYSJ1.385e-3339.25Coleoptile phototropism protein 1 OS=Oryza sativa ... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA100CF10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262690 ID=DY262690; Name=DY262690; organism=Citrus clementina; type=EST; length=1308bp
ATAGGACCCCCTTCTGCTGCTAGAAAACAAACCTAGTTTTGGTAATTCAA
TGAGATGGTGATCATTTGTGAGGCTGAAAGTGGATGGTACAGTTATTAGA
ACACTGATTGAGCTTTACTCTTATCACCATTGAATGTTTCTGCAGTTCAG
GGTTTTATTGAACATTTGAATAGGGTCAAAAGGAAACAAAAAAGTACATG
CTACTATATATCTGATGGAAAGATGAACATGACAGAGACCATCAGACTTT
GCTATGTTGGATGTTGTTCAGGAAGAAGCTGCTCCCGTCACTCTGAACAT
GTCTAACAAGAAGAAGGAGCTTCTATCTACTGCCATGAAGAGAACTAGTG
AATGGATTTTTTCCCAGGAGATTCCTAGTGATGTCACTGTTCATGTTGGA
GGAACTTCTTTTTCATTGCATAAGTTTCCATTAGTCTCAAAATGTGGATA
CATTAGGAAGCTGGTTTCAGTATCTAGTGAAGCTGATCTTTCTGTCATTG
AAATCCCTGACGTTCCGGGTGGAGCAGAGGCATTTGAGTTAGCAGCAAAA
TTCTGTTATGGAATTAATTTTGAAATTAACACAGAAAATGTTGCCGGGCT
TAGATGCGTGGCAGAGTATCTTGAGATGACTGAGGACTATGCAGTCGGGA
ACTTAGTTGGAAGAGCTGAAGCCTACTTGAATGAAGTAGCACTTACGAGC
CTTACAGGGGCTGTTACTGTTTTGCACAAGTCACAAGGCCTTCTTCCAAT
TGCTGAGAAAGTAAAATTGGTTGGCCAATGCATAGATGCAATAGCATATA
TAGCCTGCAAGGAAAACCAATTTTCTGGCTCCGGTAGGGCTGAGAGTGGT
ACTGACAATGCAATTTCTGATATGGTCTCTCATCCAAAGACTATTGTTGA
TTGGTGGGCAAAAGATTAACTGTTCTGCGGATTGATGTTTTCCACCAAGT
CTGATAACATGATGGCAAAAGAATTAAACAATTGCTCCTGGGCCTGTACT
TTGCCTTTGCCCAAAATCTCTCCAAGGTTGGAAGTATTTGAAAGGGAAGG
AAAAATATTGAGCCCATCCAAACTTGAAAAAAAATTTGTTTAAAAACAAA
GTTTTCCCTTCGCCAAGGGAAAAGGAAGGCAATGTCTTTTACTTTCCTTT
TTGGGGTTCGTCGCACCTTCCAAAATTTTTTTAAAAAAACCCTTTTTTTG
GCCGGGTTTGTTTTTGGAAAAAAAAAAAAGGGGCCCTTTTCAAATAAGTG
GAAAAACCCTTTGTTTTTGGTGAAGAATTTTCTTTTTTTTTTTTTCCCCC
CCCCCCCA
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