DY262694

Overview
NameDY262694
Unique NameDY262694
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1340
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262694_ssr409 microsatellite DY262694_ssr409:409..423. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2347 contig Ccv1_Contig2347:1..1340. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY262694 vs. ExPASy Swiss-Prot
Match: GLNA1_VITVI (Glutamine synthetase cytosolic isozyme 1 OS=Vitis vinifera GN=GS1-1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.836e-22
Identity = 36/72 (50.00%), Postives = 44/72 (61.11%), Query Frame = 2 
Query:  545 EVIWTLRW*CRGVLGTWITN*RDGGEDRTWWRAIVDSHY*ACLYA*ITI*GIHGQVLLEQWEFQLGPSVVIS 760
            EV W + W   G  G         G D+ W R IVD+HY ACLYA I I GI+G+V+  QWE+Q+GPSV IS
Sbjct:  138 EVKWPIGWPVGGFPGPQGPYYCGIGADKAWGRDIVDAHYKACLYAGINISGINGEVMPGQWEYQVGPSVGIS 209

HSP 2 Score: 60.8474 bits (146), Expect = 2.836e-22
Identity = 39/104 (37.50%), Postives = 56/104 (53.85%), Query Frame = 3 
Query:  762 AENQ*WLARYLLEKITENARVAPSFNLQPTQGDLNRTCGSPNYTPQLKRDERSL*GIKKSF**LGLRHWELLATIGGEQ*TPTSWQTRKP*VNTFQRGDANPAA 1073
            A ++ W++RY+LE+ITE A V  SF+ +P QGD N      NY+ +  R++     IKK+   LGLRH E +A  G       + +     +NTF  G AN  A
Sbjct:  210 AGDELWVSRYILERITEIAGVVLSFDPKPIQGDWNGAGAHTNYSTKSMRNDGGFEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGA 313
[Close]
BLAST of DY262694 vs. ExPASy Swiss-Prot
Match: GLNA1_ALNGL (Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.125e-22
Identity = 37/72 (51.39%), Postives = 44/72 (61.11%), Query Frame = 2 
Query:  545 EVIWTLRW*CRGVLGTWITN*RDGGEDRTWWRAIVDSHY*ACLYA*ITI*GIHGQVLLEQWEFQLGPSVVIS 760
            +V W L W   G  G         G D+ W R IVD+HY ACLYA I I GI+G+V+  QWEFQ+GPSV IS
Sbjct:  138 DVKWPLGWPVGGYPGPQGPYYCGIGADKAWGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGIS 209

HSP 2 Score: 58.5362 bits (140), Expect = 8.125e-22
Identity = 39/104 (37.50%), Postives = 54/104 (51.92%), Query Frame = 3 
Query:  762 AENQ*WLARYLLEKITENARVAPSFNLQPTQGDLNRTCGSPNYTPQLKRDERSL*GIKKSF**LGLRHWELLATIGGEQ*TPTSWQTRKP*VNTFQRGDANPAA 1073
            A ++ W ARY+LE+ITE A V  S + +P QGD N      NY+ +  R+      IKK+   LGLRH E +A  G       + +     +NTF+ G AN  A
Sbjct:  210 AGDEVWAARYILERITEIAGVVLSLDPKPIQGDWNGAGAHTNYSTKSMRNNGGYEIIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFKWGVANRGA 313
[Close]
BLAST of DY262694 vs. ExPASy Swiss-Prot
Match: GLNA1_LOTJA (Glutamine synthetase cytosolic isozyme OS=Lotus japonicus GN=GLN1 PE=2 SV=2)

HSP 1 Score: 63.1586 bits (152), Expect = 3.028e-21
Identity = 35/72 (48.61%), Postives = 44/72 (61.11%), Query Frame = 2 
Query:  545 EVIWTLRW*CRGVLGTWITN*RDGGEDRTWWRAIVDSHY*ACLYA*ITI*GIHGQVLLEQWEFQLGPSVVIS 760
            EV W + W   G  G         G D+ + R IVD+HY ACLYA + I GI+G+V+  QWEFQ+GPSV IS
Sbjct:  138 EVNWPVGWPIGGFPGPQGPYYCGIGADKAFGRDIVDAHYKACLYAGVNISGINGEVMPGQWEFQVGPSVGIS 209

HSP 2 Score: 60.8474 bits (146), Expect = 3.028e-21
Identity = 39/104 (37.50%), Postives = 56/104 (53.85%), Query Frame = 3 
Query:  762 AENQ*WLARYLLEKITENARVAPSFNLQPTQGDLNRTCGSPNYTPQLKRDERSL*GIKKSF**LGLRHWELLATIGGEQ*TPTSWQTRKP*VNTFQRGDANPAA 1073
            A ++ W+ARY+LE+ITE A V  SF+ +P +GD N      NY+ +  R++     IKK+   LGLRH E +A  G       + +     +NTF  G AN  A
Sbjct:  210 AGDEVWVARYILERITEIAGVVLSFDPKPIKGDWNGAGAHTNYSTKTMREDGGYEVIKKAIDKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGA 313
[Close]
BLAST of DY262694 vs. ExPASy Swiss-Prot
Match: GLNA2_VITVI (Glutamine synthetase cytosolic isozyme 2 OS=Vitis vinifera GN=GS1-2 PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 3.028e-21
Identity = 35/71 (49.30%), Postives = 43/71 (60.56%), Query Frame = 2 
Query:  548 VIWTLRW*CRGVLGTWITN*RDGGEDRTWWRAIVDSHY*ACLYA*ITI*GIHGQVLLEQWEFQLGPSVVIS 760
            V W + W   G  G         G D+ + R IVDSHY ACLYA I I GI+G+V+  QWEFQ+GP+V IS
Sbjct:  139 VKWPIGWPVGGYPGPQGPYYCGIGADKAFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGIS 209

HSP 2 Score: 62.003 bits (149), Expect = 3.028e-21
Identity = 41/110 (37.27%), Postives = 58/110 (52.73%), Query Frame = 3 
Query:  744 PLL*FLAENQ*WLARYLLEKITENARVAPSFNLQPTQGDLNRTCGSPNYTPQLKRDERSL*GIKKSF**LGLRHWELLATIGGEQ*TPTSWQTRKP*VNTFQRGDANPAA 1073
            P +   A ++ W+ARY+LE+ITE A V  SF+ +P QGD N      NY+ +  R++     IKK+   LGLRH E +A  G       + +     +NTF  G AN  A
Sbjct:  204 PAVGISAGDELWVARYILERITEIAGVVVSFDPKPIQGDWNGAGAHTNYSTKSMRNDGGYEIIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGA 313
[Close]
BLAST of DY262694 vs. ExPASy Swiss-Prot
Match: GLN11_ARATH (Glutamine synthetase cytosolic isozyme 1-1 OS=Arabidopsis thaliana GN=GLN1-1 PE=1 SV=2)

HSP 1 Score: 62.3882 bits (150), Expect = 6.665e-21
Identity = 34/72 (47.22%), Postives = 45/72 (62.50%), Query Frame = 2 
Query:  545 EVIWTLRW*CRGVLGTWITN*RDGGEDRTWWRAIVDSHY*ACLYA*ITI*GIHGQVLLEQWEFQLGPSVVIS 760
            +V W + W   G  G         G D+++ R +VDSHY ACLYA I I GI+G+V+  QWEFQ+GP+V IS
Sbjct:  138 DVKWPVGWPIGGYPGPQGPYYCGIGADKSFGRDVVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGIS 209

HSP 2 Score: 60.4622 bits (145), Expect = 6.665e-21
Identity = 41/110 (37.27%), Postives = 56/110 (50.91%), Query Frame = 3 
Query:  744 PLL*FLAENQ*WLARYLLEKITENARVAPSFNLQPTQGDLNRTCGSPNYTPQLKRDERSL*GIKKSF**LGLRHWELLATIGGEQ*TPTSWQTRKP*VNTFQRGDANPAA 1073
            P +   A ++ W+ARY+LE+ITE A V  SF+ +P  GD N      NY+ +  R+E     IKK+   LGLRH E +A  G       +       +NTF  G AN  A
Sbjct:  204 PAVGISAADEIWVARYILERITEIAGVVVSFDPKPIPGDWNGAGAHCNYSTKSMREEGGYEIIKKAIDKLGLRHKEHIAAYGEGNERRLTGHHETADINTFLWGVANRGA 313
[Close]
BLAST of DY262694 vs. ExPASy Swiss-Prot
Match: GLNA3_MEDSA (Glutamine synthetase nodule isozyme OS=Medicago sativa GN=GS1 PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 8.670e-21
Identity = 35/69 (50.72%), Postives = 42/69 (60.87%), Query Frame = 2 
Query:  554 WTLRW*CRGVLGTWITN*RDGGEDRTWWRAIVDSHY*ACLYA*ITI*GIHGQVLLEQWEFQLGPSVVIS 760
            W L W   G  G         G D+ + R IVD+HY ACLYA I I GI+G+V+  QWEFQ+GPSV IS
Sbjct:  141 WPLGWPIGGFPGPQGPYYCGIGADKAYGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGIS 209

HSP 2 Score: 59.6918 bits (143), Expect = 8.670e-21
Identity = 39/104 (37.50%), Postives = 54/104 (51.92%), Query Frame = 3 
Query:  762 AENQ*WLARYLLEKITENARVAPSFNLQPTQGDLNRTCGSPNYTPQLKRDERSL*GIKKSF**LGLRHWELLATIGGEQ*TPTSWQTRKP*VNTFQRGDANPAA 1073
            A ++ W ARY+LE+ITE A V  SF+ +P  GD N      NY+ +  R++     IKK+   LGLRH E +A  G       + +     +NTF  G AN  A
Sbjct:  210 AGDEIWAARYILERITEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMREDGGYEIIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETTDINTFSWGVANRGA 313
[Close]
BLAST of DY262694 vs. ExPASy Swiss-Prot
Match: GLNA2_PHAVU (Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.128e-20
Identity = 35/72 (48.61%), Postives = 44/72 (61.11%), Query Frame = 2 
Query:  545 EVIWTLRW*CRGVLGTWITN*RDGGEDRTWWRAIVDSHY*ACLYA*ITI*GIHGQVLLEQWEFQLGPSVVIS 760
            +V W L W   G  G         G D+ + R IVD+HY AC+YA I I GI+G+V+  QWEFQ+GPSV IS
Sbjct:  138 DVNWPLGWPLGGYPGPQGPYYCGVGADKAYGRDIVDAHYKACVYAGINISGINGEVMPGQWEFQVGPSVGIS 209

HSP 2 Score: 58.9214 bits (141), Expect = 1.128e-20
Identity = 38/101 (37.62%), Postives = 52/101 (51.49%), Query Frame = 3 
Query:  762 AENQ*WLARYLLEKITENARVAPSFNLQPTQGDLNRTCGSPNYTPQLKRDERSL*GIKKSF**LGLRHWELLATIGGEQ*TPTSWQTRKP*VNTFQRGDAN 1064
            A ++ W ARY+LE+ITE A    SF+ +P  GD N      NY+ +  R+E     IKK+   LGLRH E +A  G       + +     +NTF  G AN
Sbjct:  210 AGDEVWAARYILERITELAGAVVSFDPKPIPGDWNGAGAHSNYSTKSMREEGGYEVIKKAIEKLGLRHKEHIAAYGKGNERRLTGRHETADINTFSWGVAN 310
[Close]
BLAST of DY262694 vs. ExPASy Swiss-Prot
Match: GLNA_LACSA (Glutamine synthetase OS=Lactuca sativa PE=2 SV=2)

HSP 1 Score: 61.2326 bits (147), Expect = 1.128e-20
Identity = 41/110 (37.27%), Postives = 56/110 (50.91%), Query Frame = 3 
Query:  744 PLL*FLAENQ*WLARYLLEKITENARVAPSFNLQPTQGDLNRTCGSPNYTPQLKRDERSL*GIKKSF**LGLRHWELLATIGGEQ*TPTSWQTRKP*VNTFQRGDANPAA 1073
            P +   A +Q W+ARY+LE+ITE   V  SF+ +P  GD N      NY+ +  R+E     IKK+   LGLRH E +A  G       + +     +NTF  G AN  A
Sbjct:  204 PSVGIAAADQIWVARYILERITEIYGVVVSFDPKPIPGDWNGAGAHTNYSTKTMREEGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGA 313

HSP 2 Score: 60.8474 bits (146), Expect = 1.128e-20
Identity = 33/69 (47.83%), Postives = 42/69 (60.87%), Query Frame = 2 
Query:  554 WTLRW*CRGVLGTWITN*RDGGEDRTWWRAIVDSHY*ACLYA*ITI*GIHGQVLLEQWEFQLGPSVVIS 760
            W L W   G  G         G D+ + R IVD+HY ACLYA + I GI+G+V+  QWEFQ+GPSV I+
Sbjct:  141 WPLGWPLGGFPGPQGPYYCGIGADKAFGRDIVDAHYKACLYAGVNISGINGEVMPGQWEFQVGPSVGIA 209
[Close]
BLAST of DY262694 vs. ExPASy Swiss-Prot
Match: GLNA_PINSY (Glutamine synthetase cytosolic isozyme OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.482e-20
Identity = 36/72 (50.00%), Postives = 44/72 (61.11%), Query Frame = 2 
Query:  545 EVIWTLRW*CRGVLGTWITN*RDGGEDRTWWRAIVDSHY*ACLYA*ITI*GIHGQVLLEQWEFQLGPSVVIS 760
            +V W L W   G  G         G D+ W R IVD+HY ACLY+ I I GI+G+V+  QWEFQ+GPSV IS
Sbjct:  139 DVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDAHYKACLYSGINISGINGEVMPGQWEFQVGPSVGIS 210

HSP 2 Score: 54.299 bits (129), Expect = 2.482e-20
Identity = 36/104 (34.62%), Postives = 53/104 (50.96%), Query Frame = 3 
Query:  762 AENQ*WLARYLLEKITENARVAPSFNLQPTQGDLNRTCGSPNYTPQLKRDERSL*GIKKSF**LGLRHWELLATIGGEQ*TPTSWQTRKP*VNTFQRGDANPAA 1073
            A ++ W AR+++E+ITE A V  SF+ +P +GD N      NY+ +  R E     IKK+   L LRH E ++  G       + +     +NTF  G AN  A
Sbjct:  211 AADELWCARFIMERITEKAGVVLSFDPKPIEGDWNGAGCHTNYSTKSMRKEGGFEVIKKAIEKLKLRHKEHISAYGEGNERRLTGRHETADMNTFSWGVANRGA 314
[Close]
BLAST of DY262694 vs. ExPASy Swiss-Prot
Match: GLNA_VIGAC (Glutamine synthetase nodule isozyme OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 3.228e-20
Identity = 35/72 (48.61%), Postives = 44/72 (61.11%), Query Frame = 2 
Query:  545 EVIWTLRW*CRGVLGTWITN*RDGGEDRTWWRAIVDSHY*ACLYA*ITI*GIHGQVLLEQWEFQLGPSVVIS 760
            +V W L W   G  G         G D+ + R IVD+HY ACLYA I I GI+G+V+  QWEFQ+GP+V IS
Sbjct:  138 DVNWPLGWPVGGFPGPQGPYYCGAGADKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPAVGIS 209

HSP 2 Score: 56.6102 bits (135), Expect = 3.228e-20
Identity = 38/110 (34.55%), Postives = 56/110 (50.91%), Query Frame = 3 
Query:  744 PLL*FLAENQ*WLARYLLEKITENARVAPSFNLQPTQGDLNRTCGSPNYTPQLKRDERSL*GIKKSF**LGLRHWELLATIGGEQ*TPTSWQTRKP*VNTFQRGDANPAA 1073
            P +   A ++ W+ARY+LE+ITE A V  SF+ +P +GD N      NY+ +  R++     IK +   LG RH E +A  G       + +     +NTF  G AN  A
Sbjct:  204 PAVGISAGDELWVARYILERITEIAGVVLSFDPKPIKGDWNGAGAHTNYSTKTMRNDGGYEVIKSAIEKLGKRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGA 313
The following BLAST results are available for this feature:
BLAST of DY262694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
GLNA1_VITVI2.836e-2250.00Glutamine synthetase cytosolic isozyme 1 OS=Vitis ... [more]
GLNA1_ALNGL8.125e-2251.39Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE... [more]
GLNA1_LOTJA3.028e-2148.61Glutamine synthetase cytosolic isozyme OS=Lotus ja... [more]
GLNA2_VITVI3.028e-2149.30Glutamine synthetase cytosolic isozyme 2 OS=Vitis ... [more]
GLN11_ARATH6.665e-2147.22Glutamine synthetase cytosolic isozyme 1-1 OS=Arab... [more]
GLNA3_MEDSA8.670e-2150.72Glutamine synthetase nodule isozyme OS=Medicago sa... [more]
GLNA2_PHAVU1.128e-2048.61Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE... [more]
GLNA_LACSA1.128e-2037.27Glutamine synthetase OS=Lactuca sativa PE=2 SV=2[more]
GLNA_PINSY2.482e-2050.00Glutamine synthetase cytosolic isozyme OS=Pinus sy... [more]
GLNA_VIGAC3.228e-2048.61Glutamine synthetase nodule isozyme OS=Vigna aconi... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100CG03RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262694 ID=DY262694; Name=DY262694; organism=Citrus clementina; type=EST; length=1340bp
TCAAAAAAAGTTGATGACTCGATGACTTGTTAGCTTCTAACTTTTTTATT
CATGCAATGATGCTAGTGAAGAAGGACAAGAACGGCTGCCGGAGAGAAAT
GCGCCAGCTGGGTGTTATCAGAACAAAGAATAATAAAGCCCGCCGGAATA
AAAGGCTGCAAATCTGGCGACTGAGTGCTAAAAACAAAGAAACGGTGATG
TCTTTGTCGTTGTCGCTGACCTCCTCCTCGTCGTCGTCCTCTTCTTCAGA
AAACTACGACGTTTTAGAAAAGAAGGCACGCACTAATACTGTCACGTGCT
TGTCACACGGGACAATGTCTGTCATCGGAAGGAGGAAGGAGATGGAAGAT
GCAGTGAGAGTTGAGTTAGGGTGTATGGGGGNGTGGGGGTGGTGGTGATG
GTGATGGGGATGATGATGATGATCGGAAGAAATATGATTTTTTCAGAGTG
TATGATGGGAACGGTGGGGCCCTGGTGCCGTACGCATGCTGTGACAGAAT
ACACAAGGTGTTGGTGTAGGTGATAACACGACTAAAATATGACGGAAGTA
ATATGGACTCTTAGATGGTGATGCAGGGGTGTTTTGGGAACATGGATAAC
GAACTGAAGAGATGGAGGTGAAGACAGGACATGGTGGCGTGCCATTGTGG
ACTCCCATTACTAGGCCTGTCTATATGCATGAATCACCATCTGAGGCATT
CATGGACAAGTCTTGCTGGAGCAGTGGGAGTTCCAACTTGGTCCCTCTGT
TGTAATTTCTGGCTGAAAATCAGTAGTGGCTTGCCCGCTATCTTTTAGAG
AAGATTACAGAAAATGCTAGAGTTGCGCCTTCTTTCAATCTCCAGCCCAC
TCAGGGTGATCTGAATAGAACTTGTGGATCACCCAATTACACTCCCCAAC
TGAAGAGGGACGAGCGGAGCTTATGAGGTATTAAGAAATCCTTCTGATAA
CTTGGACTGAGGCACTGGGAGCTACTTGCCACCATAGGTGGAGAGCAATG
AACGCCCACTTCTTGGCAAACTCGAAAGCCTTAAGTCAACACTTTCCAAA
GGGGGGATGCAAACCCCGCGGCCCCAACTCCCGGTGAAACAAAAACAAAA
AAAAGAAGAAAAGGGTTACTTTTAAGGAATGGAAACCTTGCTTTTATTGA
TATATCCTAAATGTTTCTCCCCTCTCTTGATGGCAAAAAAACCCTATTTT
TGGGAAAACCACAGCAAGGCCCTCCCCACACACCCATTTTATAATAATTT
TTTTGTTTTTTTTAGTGCGGGGAGTATTTCCCTTTCTTTATACATCAACA
GAAAATTCCACAAAACAAAAAAAATTTTTTGTTTGGTGGG
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