DY262704

Overview
NameDY262704
Unique NameDY262704
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1205
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262704_ssr280 microsatellite DY262704_ssr280:280..291. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY262704 vs. ExPASy Swiss-Prot
Match: CCD55_MOUSE (Coiled-coil domain-containing protein 55 OS=Mus musculus GN=Ccdc55 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 8.947e-24
Identity = 71/199 (35.68%), Postives = 107/199 (53.77%), Query Frame = 2
Query:  299 VEGEISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVRR--KVQDRADTQPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTDVSDFYFN-LHKNVAFGGGNKDSMNLDKKAEVTNPEKKGRQKGPTKKARERGNTRSCLNTR 886
            V   + R+A K +A+K+ + + +KALAED  V++YD  YDEM++K      K+    D +PKYIH L+   + RK+E +   E+K+ +ER  E+  F DKE FVT AYKKKLEE+      +      +   DVTK+ D+S FY + L++ V      K S    ++A     E+K R       +  R   +SC+  R
Sbjct:   40 VSESLQREAAKKQAMKQTKLEIQKALAEDSTVYEYDSVYDEMQKKKEENNPKLLPGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMENGEFDDKEAFVTSAYKKKLEERAEEEEREKRAAALEAHLDVTKQKDLSGFYRHLLNQAVGEEAAPKSSF---REARTVIKEEKLRGYPDETNSESRPPQQSCVLQR 235          
BLAST of DY262704 vs. ExPASy Swiss-Prot
Match: CCD55_BOVIN (Coiled-coil domain-containing protein 55 OS=Bos taurus GN=CCDC55 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.993e-23
Identity = 67/187 (35.83%), Postives = 105/187 (56.15%), Query Frame = 2
Query:  299 VEGEISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVRR--KVQDRADTQPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTDVSDFYFNLHKNVAFGGGNKDSMNL-DKKAEVTNPEKKGRQKGPTKKAR 850
            V   + R+A K +A+K+ + + +KALAED  V++YD  YDEM++K      K+    D +PKYIH L+   + RK+E +   E+K+ +ER  E   F DKE FVT AYKKKL+E+      +      + R DVTK+ D+S FY +L  N A G     + +  + ++E+   + KG     + ++R
Sbjct:   42 VSESLQREAAKKQAMKQTKLEIQKALAEDSTVYEYDSIYDEMQKKKEESNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFVTSAYKKKLQERAEEEERERRAAALEARLDVTKQRDLSGFYRHL-LNQAVGEEEVPTCSFREARSEIKEEKSKGYSDEVSSESR 227          
BLAST of DY262704 vs. ExPASy Swiss-Prot
Match: CCD55_RAT (Coiled-coil domain-containing protein 55 OS=Rattus norvegicus GN=Ccdc55 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.400e-23
Identity = 60/147 (40.82%), Postives = 88/147 (59.86%), Query Frame = 2
Query:  299 VEGEISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVRR--KVQDRADTQPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTDVSDFYFNL 733
            V   + R+A K +A+++ + + +KALAED  V++YD  YDEM++K      K+    D +PKYIH L+   + RK+E +   E+K+ +ER  E   F DKE FVT AYKKKLEE+      +      + R DVTK+ D+S FY +L
Sbjct:   40 VSESLQREAAKKQAMRQTKLEIQKALAEDSTVYEYDSIYDEMQKKKEENNPKLLMGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFVTSAYKKKLEERAEEEEREKRAAALEARLDVTKQKDLSGFYRHL 186          
BLAST of DY262704 vs. ExPASy Swiss-Prot
Match: CCD55_HUMAN (Coiled-coil domain-containing protein 55 OS=Homo sapiens GN=CCDC55 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.878e-22
Identity = 64/151 (42.38%), Postives = 90/151 (59.60%), Query Frame = 2
Query:  299 VEGEISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVRR--KVQDRADTQPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKL----EEQQRWAREQALRDLRDERDDVTKKTDVSDFYFNL 733
            V   + R+A K +A+K+ + + +KALAED  V++YD  YDEM++K      K+    D +PKYIH L+   + RK+E +   E+K+ +ER  E   F DKE FVT AYKKKL    EE++R  R  AL        DVTK+ D+S FY +L
Sbjct:   41 VSESLQREAAKKQAMKQTKLEIQKALAEDATVYEYDSIYDEMQKKKEENNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFVTSAYKKKLQERAEEEEREKRAAALEACL----DVTKQKDLSGFYRHL 187          
BLAST of DY262704 vs. ExPASy Swiss-Prot
Match: CCD55_DANRE (Coiled-coil domain-containing protein 55 OS=Danio rerio GN=ccdc55 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 8.374e-22
Identity = 60/184 (32.61%), Postives = 99/184 (53.80%), Query Frame = 2
Query:  311 ISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVR--RKVQDRADTQPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTDVSDFYFNLHKNVAFGGGNKDSMNLDKKAEVTNPEKKGRQKGPTKKARER 856
            + ++AIK + +K+   + +KAL ED  V++YD  YD+++++ +   +K+    D +PKYI++L+   +ERK+E +   ERK+ KER  E   FADKE FVT AY++KL+E+Q     +      +   DV K+ D+S FY +   N   G       +   + + T+     R   P   A  R
Sbjct:   43 LQKEAIKKKMMKQTRLEMQKALEEDSTVYEYDNVYDDIQKQRLESNKKLLGGEDKKPKYINQLLRAVEERKKEQERRDERKIQKEREAEGEKFADKEAFVTSAYRQKLKERQEELEREKREAELEAALDVKKQKDLSGFYRHF-LNQTVGEEVVPDRSAQSEEKATSSAAAERSPSPESTANRR 225          
BLAST of DY262704 vs. ExPASy Swiss-Prot
Match: CCD55_CAEBR (Coiled-coil domain-containing protein 55 homolog OS=Caenorhabditis briggsae GN=ccdc-55 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 4.921e-14
Identity = 48/126 (38.10%), Postives = 72/126 (57.14%), Query Frame = 2
Query:  335 RALKEIEEQQRKALAEDPNVFDYDGCYDEMKQ-KSVRRKVQDRADT--QPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKK 703
            R  K  E + +KA AEDP +FDYDG YDE++  K+ +++   +AD   + KY   +I     R+ E     ER+  KER KE   F DKE FVTGAY+K+ EE +++  ++A     ++   V K+
Sbjct:   51 RIQKAAEREHQKAEAEDPTIFDYDGNYDEIQAIKNEKKEEARKADKNKESKYAEAIIKAHARRQLEQFSREERQQIKEREKEAGEFDDKEVFVTGAYRKQQEEVKKYREQEAEEAAFNDMTSVQKQ 176          
BLAST of DY262704 vs. ExPASy Swiss-Prot
Match: CCD55_CAEEL (Coiled-coil domain-containing protein 55 homolog OS=Caenorhabditis elegans GN=ccdc-55 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 8.394e-14
Identity = 58/185 (31.35%), Postives = 91/185 (49.19%), Query Frame = 2
Query:  335 RALKEIEEQQRKALAEDPNVFDYDGCYDEMKQ-KSVRRKVQDRADT--QPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEE----QQRWAREQALRDLRDERDDVTKKTDVSDFYFN--LHKNVAFGGGNKDSMNLDKKA---EVTNPEKKGRQKGPTKKARE 853
            R  K  E + +KA AEDP +FDYDG YDE++  K+ +++   +AD   + KY   +I     R+ E     ER+  +ER KE   F DKE FVTGAY+K+ EE    +++ A E A  D+   +     +  +     N       A     K+  N+ K+    E  +P+ +   K P +K ++
Sbjct:   51 RVQKAAEREHQKAEAEDPTIFDYDGNYDEIQAIKNEKKEEARKADKNRESKYAENIIKAHARRQLEQFSREERQQLREREKEGDEFDDKEVFVTGAYRKQQEEVKKHREQEAEEAAFNDMTSVQKQKLWEIGMGRTLLNDLARDPTAIKQRKKEQKNVRKREDSDEEIDPKPEKSDKKPAEKLKK 235          
The following BLAST results are available for this feature:
BLAST of DY262704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CCD55_MOUSE8.947e-2435.68Coiled-coil domain-containing protein 55 OS=Mus mu... [more]
CCD55_BOVIN1.993e-2335.83Coiled-coil domain-containing protein 55 OS=Bos ta... [more]
CCD55_RAT3.400e-2340.82Coiled-coil domain-containing protein 55 OS=Rattus... [more]
CCD55_HUMAN2.878e-2242.38Coiled-coil domain-containing protein 55 OS=Homo s... [more]
CCD55_DANRE8.374e-2232.61Coiled-coil domain-containing protein 55 OS=Danio ... [more]
CCD55_CAEBR4.921e-1438.10Coiled-coil domain-containing protein 55 homolog O... [more]
CCD55_CAEEL8.394e-1431.35Coiled-coil domain-containing protein 55 homolog O... [more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA100CH01RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262704 ID=DY262704; Name=DY262704; organism=Citrus clementina; type=EST; length=1205bp
ATTCATTTCGCCTTTCCTATGCTTTCGTGAACACTTCAGAAGAAGTTGAT
TATCACAGCTTTAAATTGATCACGTGCTCTGTGCTCAATTCTGTACGAAA
AGAACCTTTAATCAGCTTTGTAAACTCGTTCGCTGGAGCCGATGAATCGA
CTCAGCGTATAATTGAAAAATCATGAGTAAATACGGCTTGCAACTTAGGG
TTAATCCATCACAACAAAAGAAACAGCCAACAAATAAGCCTCCGTTGCCA
CCGCCTAAGGCTTTTGGTCTTGATGACGACGGCGGCGGCGGCGACGACGT
GGAGGGAGAAATCTCCCGCCAAGCTATCAAGAACAGGGCTCTCAAAGAGA
TTGAGGAGCAGCAAAGGAAGGCCTTGGCAGAGGATCCAAATGTGTTTGAT
TATGACGGATGTTATGATGAGATGAAGCAGAAAAGTGTCCGACGTAAAGT
GCAGGATCGTGCAGACACACAGCCGAAATATATTCATAAACTGATTCACA
AAGCTGACGAGCGAAAGCGGGAGCATGACATAATCTATGAGAGGAAACTT
ACTAAAGAGAGAAGCAAGGAAGACCACCTTTTTGCAGACAAGGAAAAATT
TGTTACAGGTGCTTACAAGAAGAAACTTGAAGAGCAGCAAAGGTGGGCTC
GTGAACAAGCCTTGCGTGATCTTCGAGATGAAAGAGATGATGTCACCAAG
AAGACTGATGTGAGTGATTTTTACTTCAACCTTCATAAAAATGTTGCCTT
TGGTGGAGGCAACAAGGACTCAATGAATTTAGACAAGAAGGCTGAAGTAA
CAAACCCAGAAAAAAAAGGTAGACAAAAAGGCCCAACAAAAAAGGCCAGA
GAAAGAGGAAATACAAGGAGCTGCTTAAACACCAGAAAAAGAACGTTTGG
TCTTGCTACTTCAACCCTGCTGCGAAGCCTTCCAAAGGGAAAAAAAGGGA
TCCGGGCTTAAACTTTCAACTTCTAAAAAAAAGCTTCAAAGTCCTCCAAA
TCAAAACCCCAAATTAGAAAAGGGCCAATTTTCCAAAAAATTTCAAAACA
AAAAAAAAACATTCCGGTTGAAAAAACCCTCTTTATGAGGTCAACCAAAA
CACCGGGGCCTCTCGAAAAAAAAGTTTTCACGAAGCCACCTATCCCTTCC
GTCTAAATCTACGCGTGTTTATTGGGCCCTCACAAAAAAAAGCTTCTGTG
ACCAC
back to top