DY262709

Overview
NameDY262709
Unique NameDY262709
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1270
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262709 vs. ExPASy Swiss-Prot
Match: AGOL_ARATH (Argonaute-like protein At2g27880 OS=Arabidopsis thaliana GN=At2g27880 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 9.550e-32
Identity = 90/221 (40.72%), Postives = 123/221 (55.66%), Query Frame = 1
Query:  454 PVRPGIGTVGRKCVVRANHFMVQLAERDIHHYDVSIDQVQDLESNRYSEVTSKKINRQIISHLINLYGLTNLGGRIPAYDGMKNIYTAGPLPFESKEFIINLXXXXXXXXXXXXXGREGQFKVVIRLASMPDLYTLQQFL-------PPNAF*SFVTCYNNA*SCSQSSSFRKPYVS-GKAFFPTDLGP-----MGHLGDDV*KLAWNFFQVLPPPQKGAS 1077
            PVRPG GT+G+K +VRANHF+VQ+A+RD++HYDVSI+           EV SK +NR ++  L+  Y  ++LGG+ PAYDG K++YTAGPLPF+SKEF++NL             G++  FKV ++  +  DLY LQQFL       P +          +  S          YVS G++FF T LG       G LGD + +    +FQ L   Q G S
Sbjct:  148 PVRPGRGTLGKKVMVRANHFLVQVADRDLYHYDVSINP----------EVISKTVNRNVMKLLVKNYKDSHLGGKSPAYDGRKSLYTAGPLPFDSKEFVVNL----AEKRADGSSGKDRPFKVAVKNVTSTDLYQLQQFLDRKQREAPYDTIQVLDVVLRDKPS--------NDYVSVGRSFFHTSLGKDARDGRGELGDGI-EYWRGYFQSLRLTQMGLS 345          
BLAST of DY262709 vs. ExPASy Swiss-Prot
Match: AGO1C_ORYSJ (Protein argonaute 1C OS=Oryza sativa subsp. japonica GN=AGO1C PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 6.190e-31
Identity = 86/221 (38.91%), Postives = 119/221 (53.85%), Query Frame = 1
Query:  439 QELRLPVRPGIGTVGRKCVVRANHFMVQLAERDIHHYDVSIDQVQDLESNRYSEVTSKKINRQIISHLINLYGLTNLGGRIPAYDGMKNIYTAGPLPFESKEFIINLXXXXXXXXXXXXXGREGQFKVVIRLASMPDLYTLQQFL-------PPNAF*SFVTCYNNA*SCSQSSSFRKPYVSGKAFFPTDLGPMGHLGDDV*KLAW-NFFQVLPPPQKGAS 1077
            + +R P+RPG GT+G +C+V+ANHF   L  +D+HHYDVSI            EVTS+ +NR +I  L+NLY  + LGGR+PAYDG K++YTAGPLPF S+EF I L              R+  F+VVI+ A+  DL+ L+ FL       P  A            S   +     P+  G++FF   LG    LG+ +   +W  F+Q + P Q G S
Sbjct:  139 KSIRFPLRPGKGTIGTRCMVKANHFFAHLPNKDLHHYDVSITP----------EVTSRIVNRAVIKELVNLYKASYLGGRLPAYDGRKSLYTAGPLPFTSQEFQITLLDDDDGSGSER---RQRTFRVVIKFAARADLHRLELFLAGRHAEAPQEALQVLDIVLRELPSARYA-----PF--GRSFFSPYLGRRQPLGEGL--ESWRGFYQSIRPTQMGLS 337          
BLAST of DY262709 vs. ExPASy Swiss-Prot
Match: AGO1_ARATH (Protein argonaute OS=Arabidopsis thaliana GN=AGO1 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.801e-30
Identity = 79/211 (37.44%), Postives = 116/211 (54.98%), Query Frame = 1
Query:  448 RLPVRPGIGTVGRKCVVRANHFMVQLAERDIHHYDVSIDQVQDLESNRYSEVTSKKINRQIISHLINLYGLTNLGGRIPAYDGMKNIYTAGPLPFESKEFIINLXXXXXXXXXXXXXGREGQFKVVIRLASMPDLYTLQQFLPPNAF*SFVTCYNNA*SCSQSSSFRKPYVSGKAFFPTDLGPMGHLGDDV*KLAW-NFFQVLPPPQKGAS 1077
            + P+RPG G  G++C+V+ANHF  +L ++D+HHYDV+I            EVTS+ +NR ++  L++ Y  ++LG R+PAYDG K++YTAGPLPF SKEF INL              RE +FKVVI+L +  DL+ L  FL      +            +     +    G++F+  D+G    LGD +   +W  F+Q + P Q G S
Sbjct:  178 KFPMRPGKGQSGKRCIVKANHFFAELPDKDLHHYDVTITP----------EVTSRGVNRAVMKQLVDNYRDSHLGSRLPAYDGRKSLYTAGPLPFNSKEFRINLLDEEVGAGGQR---REREFKVVIKLVARADLHHLGMFLEGKQSDAPQEALQVLDIVLRELPTSRYIPVGRSFYSPDIGKKQSLGDGL--ESWRGFYQSIRPTQMGLS 373          
BLAST of DY262709 vs. ExPASy Swiss-Prot
Match: MEL1_ORYSJ (Protein argonaute MEL1 OS=Oryza sativa subsp. japonica GN=MEL1 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 6.844e-30
Identity = 92/264 (34.85%), Postives = 136/264 (51.52%), Query Frame = 1
Query:  454 PVRPGIGTVGRKCVVRANHFMVQLAERDIHHYDVSIDQVQDLESNRYSEVTSKKINRQIISHLINLYGLTNLGGRIPAYDGMKNIYTAGPLPFESKEFIINLXXXXXXXXXXXXXGREGQFKVVIRLASMPDLYTLQQFL------PPNAF*SFVTCYNNA*SCSQSSSFRKPYVSGKAFFPTDLGPMGHLGDDV*KLAW-NFFQVLPPPQKGASP*KIMVSAPLPL*TQFLIMGNLFQYIGEQP*TVFSFFIQFPSLKGGKKP 1224
            P RPG G  G+K ++RANHF+V +A+ ++ HYDVSI+           E  S+  NR++++ LI L+G T+LGG++PAYDG K++YTAG LPFES+EF++ L               E ++K+ IR+A   DLY LQQFL       P      +          +S S+    VS ++FF T  G  G +G+ +    W  ++Q L P Q G S   I +SA     T F            +P TV  F  +F +++   +P
Sbjct:  200 PARPGFGAAGKKVMIRANHFLVNVADNNLFHYDVSINP----------ESKSRATNREVLNELIKLHGKTSLGGKLPAYDGRKSLYTAGSLPFESEEFVVKLIDPEKKDKER----AEREYKITIRIAGRTDLYHLQQFLLGRQRDMPQETIQVLDVV-----LRESPSWNYVTVS-RSFFSTQFGHRGDIGEGL--ECWRGYYQSLRPTQMGLSL-NIDISA-----TSFF-----------KPVTVIQFVEEFLNIRDTSRP 424          
BLAST of DY262709 vs. ExPASy Swiss-Prot
Match: PNH1_ORYSJ (Protein argonaute PNH1 OS=Oryza sativa subsp. japonica GN=PHN1 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 3.397e-29
Identity = 75/207 (36.23%), Postives = 116/207 (56.04%), Query Frame = 1
Query:  460 RPGIGTVGRKCVVRANHFMVQLAERDIHHYDVSIDQVQDLESNRYSEVTSKKINRQIISHLINLYGLTNLGGRIPAYDGMKNIYTAGPLPFESKEFIINLXXXXXXXXXXXXXGREGQFKVVIRLASMPDLYTLQQFLPPNAF*SFVTCYNNA*SCSQSSSFRKPYVSGKAFFPTDLGPMGHLGDDV*KLAW-NFFQVLPPPQKGAS 1077
            RPG GTVG +CVV+ANHF+ +L ++D+  YDV I            EV+S+ +NR I+S L+ LY  ++LGGR+PAYDG KN+YTAG LPF+++EF++ L              RE +++V I+ A+  DL+ L+QF+      +            +  + R+    G++F+  D+     LGD +   +W  F+Q + P Q G S
Sbjct:  127 RPGFGTVGARCVVKANHFLAELPDKDLTQYDVKITP----------EVSSRSVNRAIMSELVRLYHDSDLGGRLPAYDGRKNLYTAGTLPFDAREFVVRLTDDDDGTGVPP---REREYRVAIKFAARADLHHLRQFIAGRQADAPQEALQVLDIVLRELANRRYVSIGRSFYSPDIRKPQRLGDGL--QSWCGFYQSIRPTQMGLS 318          
BLAST of DY262709 vs. ExPASy Swiss-Prot
Match: AGO1B_ORYSJ (Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 1.291e-28
Identity = 78/215 (36.28%), Postives = 115/215 (53.49%), Query Frame = 1
Query:  439 QELRLPVRPGIGTVGRKCVVRANHFMVQLAERDIHHYDVSIDQVQDLESNRYSEVTSKKINRQIISHLINLYGLTNLGGRIPAYDGMKNIYTAGPLPFESKEFIINL-XXXXXXXXXXXXXGREGQFKVVIRLASMPDLYTLQQFLPPNAF*SFVTCYNNA*SCSQSSSFRKPYVSGKAFFPTDLGPMGHLGDDV*KLAW-NFFQVLPPPQKGAS 1077
            + +R P+RPG GT G +C+V+ANHF  +L ++D+H YDVSI            EVTS+ +NR ++  L+ LY  ++LGGR+PAYDG K++YTAGPLPF S+ F I L               RE  F+VVI+ A+  DL+ L  FL      +            +     +    G++F+  +LG    LG+ +   +W  F+Q + P Q G S
Sbjct:  240 KSVRFPLRPGKGTYGDRCIVKANHFFAELPDKDLHQYDVSITP----------EVTSRGVNRAVMFELVTLYRYSHLGGRLPAYDGRKSLYTAGPLPFASRTFEITLQDEEDSLGGGQGTQRRERLFRVVIKFAARADLHHLAMFLAGRQADAPQEALQVLDIVLRELPTTRYSPVGRSFYSPNLGRRQQLGEGL--ESWRGFYQSIRPTQMGLS 442          
BLAST of DY262709 vs. ExPASy Swiss-Prot
Match: AGO1D_ORYSJ (Protein argonaute 1D OS=Oryza sativa subsp. japonica GN=AGO1D PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.875e-28
Identity = 77/214 (35.98%), Postives = 115/214 (53.74%), Query Frame = 1
Query:  439 QELRLPVRPGIGTVGRKCVVRANHFMVQLAERDIHHYDVSIDQVQDLESNRYSEVTSKKINRQIISHLINLYGLTNLGGRIPAYDGMKNIYTAGPLPFESKEFIINLXXXXXXXXXXXXXGREGQFKVVIRLASMPDLYTLQQFLPPNAF*SFVTCYNNA*SCSQSSSFRKPYVSGKAFFPTDLGPMGHLGDDV*KLAW-NFFQVLPPPQKGAS 1077
            +  + P RPG G++G +C+V+ANHF  QL ++D+H YDVSI            E+TS+  +R ++  L+ L+ ++ LGGR+PAYDG K++YTAGPLPF SKEF I+L              R+  + VVI+ A+  DL+ L+QFL      +            +     +    G++FF  DLG    LG+ +    W  F+Q + P Q G S
Sbjct:  167 KSFKFPHRPGSGSIGTRCLVKANHFFAQLPDKDLHQYDVSITP----------ELTSRIRSRAVMEELVRLHKMSYLGGRLPAYDGRKSLYTAGPLPFTSKEFRISLLEEDDGSGSER---RQKTYNVVIKFAARADLHRLEQFLAGRQAEAPQEALQVLDIVLRELPTARYAPFGRSFFSPDLGRRRSLGEGL--ETWRGFYQSIRPTQMGLS 365          
BLAST of DY262709 vs. ExPASy Swiss-Prot
Match: AGO12_ORYSJ (Protein argonaute 12 OS=Oryza sativa subsp. japonica GN=AGO12 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 1.093e-27
Identity = 84/218 (38.53%), Postives = 117/218 (53.67%), Query Frame = 1
Query:  454 PVRPGIGTVGRKCVVRANHFMVQLAERDIHHYDVSIDQVQDLESNRYSEVTSKKINRQIISHLINLYGLTNLGGRIPAYDGMKNIYTAGPLPFESKEFIINLXXXXXXXXXXXXXGREGQFKVVIRLASMPDLYTLQQF-------LPPNAF*SFVTCYNNA*SCSQSSSFR-KPYVS-GKAFFPTDLGPMGHLGDDV*KLAW-NFFQVLPPPQKGAS 1077
            P RP +GT+GR+C VRANHF+VQ+A++DI+HYDV I            E T ++ NR II+ L+ L+    L GR+P YDG K+IYTAGPLPF++K+F++                RE ++KV I+ AS  DLY+L+QF       LP +   +          C  S +F    YVS  ++FF    G  G +G       W  ++Q L P Q G S
Sbjct:  194 PARPDVGTIGRRCRVRANHFLVQVADKDIYHYDVVIT----------PESTYRERNRSIINKLVALH-KQFLDGRLPVYDGRKSIYTAGPLPFKTKDFVVK------HINPLRGNQREEEYKVTIKQASKTDLYSLKQFLVGRQRELPQDTIQALDIALR---ECPTSVNFTCDRYVSISRSFFSQSFGHGGEIGSGT--ECWRGYYQSLRPTQMGLS 389          
BLAST of DY262709 vs. ExPASy Swiss-Prot
Match: AGO1A_ORYSJ (Protein argonaute 1A OS=Oryza sativa subsp. japonica GN=AGO1A PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.061e-26
Identity = 74/215 (34.42%), Postives = 111/215 (51.63%), Query Frame = 1
Query:  439 QELRLPVRPGIGTVGRKCVVRANHFMVQLAERDIHHYDVSIDQVQDLESNRYSEVTSKKINRQIISHLINLYGLTNLGGRIPAYDGMKNIYTAGPLPFESKEF-IINLXXXXXXXXXXXXXGREGQFKVVIRLASMPDLYTLQQFLPPNAF*SFVTCYNNA*SCSQSSSFRKPYVSGKAFFPTDLGPMGHLGDDV*KLAW-NFFQVLPPPQKGAS 1077
            + +R P+RPG GT G +C+V+ANHF  +L ++D+H YDVSI            EV S+ +NR +I  ++  Y  ++LGGR+P YDG K++YTAGPLPF S+ F +I                RE  FKVVI+ A+  DL+ L  FL      +            +     +     ++F+  +LG    LG+ +   +W  F+Q + P Q G S
Sbjct:  203 KSVRFPMRPGKGTFGDRCIVKANHFFAELPDKDLHQYDVSITP----------EVPSRGVNRAVIGEIVTQYRQSHLGGRLPVYDGRKSLYTAGPLPFTSRTFDVILQDEEESLAVGQGAQRRERPFKVVIKFAARADLHHLAMFLAGRQADAPQEALQVLDIVLRELPTARYSPVARSFYSPNLGRRQQLGEGL--ESWRGFYQSIRPTQMGLS 405          
BLAST of DY262709 vs. ExPASy Swiss-Prot
Match: PINH_ARATH (Protein PINHEAD OS=Arabidopsis thaliana GN=At5g43810 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 5.076e-25
Identity = 77/223 (34.53%), Postives = 115/223 (51.57%), Query Frame = 1
Query:  460 RPGIGTVGRKCVVRANHFMVQLAERDIHHYDVSIDQVQDLESNRYSEVTSKKINRQIISHLINLYGLTNLGGRIPAYDGMKNIYTAGPLPFESKEFIINLXXXXXXXXXXXXXGREGQFKVVIRLASMPDLYTLQQFLPPNAF*SFVTCYNNA*SCSQSSSFRKPYVSGKAFFPTDLGPMGHLGDDV*KLAW-NFFQVLPPPQKGASP*KIMVSA----PLPL 1113
            RPG GT+G KC+V+ANHF+  L  +D++ YDV+I            EV+SK +NR II+ L+ LY  ++LG R+PAYDG K++YTAG LPF  KEF + +              RE  +KV I+  +  +++ L +FL                   +  S ++    G++FF  D+     LG+ +   +W  F+Q + P Q G S    M SA    PLP+
Sbjct:  131 RPGFGTLGTKCIVKANHFLADLPTKDLNQYDVTITP----------EVSSKSVNRAIIAELVRLYKESDLGRRLPAYDGRKSLYTAGELPFTWKEFSVKIVDEDDGIINGPK--RERSYKVAIKFVARANMHHLGEFLAGKRADCPQEAVQILDIVLRELSVKRFCPVGRSFFSPDIKTPQRLGEGL--ESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPV 339          
The following BLAST results are available for this feature:
BLAST of DY262709 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
AGOL_ARATH9.550e-3240.72Argonaute-like protein At2g27880 OS=Arabidopsis th... [more]
AGO1C_ORYSJ6.190e-3138.91Protein argonaute 1C OS=Oryza sativa subsp. japoni... [more]
AGO1_ARATH1.801e-3037.44Protein argonaute OS=Arabidopsis thaliana GN=AGO1 ... [more]
MEL1_ORYSJ6.844e-3034.85Protein argonaute MEL1 OS=Oryza sativa subsp. japo... [more]
PNH1_ORYSJ3.397e-2936.23Protein argonaute PNH1 OS=Oryza sativa subsp. japo... [more]
AGO1B_ORYSJ1.291e-2836.28Protein argonaute 1B OS=Oryza sativa subsp. japoni... [more]
AGO1D_ORYSJ2.875e-2835.98Protein argonaute 1D OS=Oryza sativa subsp. japoni... [more]
AGO12_ORYSJ1.093e-2738.53Protein argonaute 12 OS=Oryza sativa subsp. japoni... [more]
AGO1A_ORYSJ2.061e-2634.42Protein argonaute 1A OS=Oryza sativa subsp. japoni... [more]
PINH_ARATH5.076e-2534.53Protein PINHEAD OS=Arabidopsis thaliana GN=At5g438... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100CH06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262709 ID=DY262709; Name=DY262709; organism=Citrus clementina; type=EST; length=1270bp
CAAGTCGTAGCTCTCGCGCTTTATTTGCGTGACCATCACTTCACTTCGGT
TCCCCAAAATTTTCTCTGATATTTTACCTTTCTGCTTTCGACAATGTCTC
GACGTGGTGGCGGTGGTCGTAGGCGGGATTCTTGCCGTGACCAGCCGACT
CAGGCACCGGCGCCGTCTTTCCAGCGCGGTGGTGGCGGAGCCGCGGGACC
ACGGGGCCGAGGTCGTCAAGGTCAACGTGGGGGTGCTGGTCGTGGATCGC
ATTCCGGCTCCGGTGCAGCCCCGTCCTCACCACACACCGCTTCGACTTCG
ACGGCGCCGGCTCCTTCGTCTCCGTCTGTTTCAGAATCCTCTCCTTCTTC
GTCTTCAGTTTCTACTCTTGTCGAAGAAACTGAGCAGAAACTGTCATTGG
CGGCACCAGCGGCGGCTACTCTTCCCCCTTTGTCGTCGCAGGAATTGAGA
CTTCCGGTGAGGCCGGGAATCGGAACCGTTGGCAGAAAATGTGTTGTCCG
AGCAAATCACTTTATGGTGCAACTTGCCGAGAGAGACATTCATCACTATG
ATGTTTCAATTGATCAAGTCCAAGATCTCGAATCGAATCGATATTCAGAG
GTGACGTCAAAAAAAATCAACAGACAAATTATTTCTCACCTGATTAATTT
ATATGGGCTGACTAACTTGGGTGGACGAATACCTGCCTATGATGGTATGA
AGAACATTTACACGGCAGGGCCGCTGCCTTTTGAATCGAAGGAATTCATT
ATCAATTTACCTGATAGTGATCCTCATCCCAGCTCGTCTACCAGCCCGGG
AAGGGAGGGTCAGTTTAAGGTGGTTATCAGATTGGCATCCATGCCTGATC
TTTACACTCTACAGCAGTTCTTACCCCCGAATGCATTTTGAAGCTTCGTA
ACATGTTATAACAATGCTTGAAGTTGTTCTCAGAGCAGCTCCTTCAGAAA
ACCATACGTTTCGGGGAAGGCATTTTTTCCAACTGATCTTGGACCAATGG
GTCACCTTGGTGATGACGTTTGAAAATTGGCGTGGAATTTTTTCCAAGTC
CTCCCCCCACCCCAGAAGGGGGCTTCTCCCTAAAAAATTATGGTTTCGGC
CCCCCTCCCTTTATAAACCCAATTTCTAATTATGGGGAATTTGTTTCAAT
ATATTGGCGAGCAACCTTAAACCGTCTTCTCTTTTTTCATCCAATTTCCG
TCCCTAAAAGGGGGAAAAAAACCCTTTTAAAGGGAAAATAAAAAGGATTT
TGCGCTTACGGAACAAATTG
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