DY262711

Overview
NameDY262711
Unique NameDY262711
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1217
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262711_ssr138 microsatellite DY262711_ssr138:138..147. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY262711 vs. ExPASy Swiss-Prot
Match: P2A12_ARATH (F-box protein PP2-A12 OS=Arabidopsis thaliana GN=P2A12 PE=2 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 1.738e-83
Identity = 153/261 (58.62%), Postives = 187/261 (71.65%), Query Frame = 3
Query:  351 KPGLGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFGDLKKDLGKRVIYARLCRMNSFDGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWWFEVDGELEFPFPAGTYSIFMRLQLGRASKRFGRRICSTEHVHGWG*KACAVSAMDIRRSACFIECNLNDPGKWVSIPWG--TSKSKREIFDQDQFLPMQIDWPPTKGVLCLNSVL*GPINVK 1127
            KPGLGDLPE+CVA+I+ +LDP EIC+ ++LNRAFRGAS AD VWESKLP NYR ++E++ G   ++L KR +YA L R+NSFD  TKKVW+DK T GVCLSISAKGL+ITGIDDRRYW+HIPT+ESRF+SVAYLQQIWWFEVDGE++FPFP GTYSIF RLQLGR+ K FGRR+C+TE VHGW  K                +C L + G W+    G    +       + +F   QID   TKG L L+SV+  P + K
Sbjct:   25 KPGLGDLPEACVAIIVENLDPVEICRFSKLNRAFRGASWADCVWESKLPQNYRDVLEKILGGFPENLQKRHLYAFLSRINSFDDATKKVWIDKRTSGVCLSISAKGLSITGIDDRRYWSHIPTDESRFSSVAYLQQIWWFEVDGEIDFPFPVGTYSIFFRLQLGRSGKWFGRRVCNTEQVHGWDIKPVRFQLWTEDGQYSSSQCMLTERGNWIHYHAGDVVVRESNRSSTKIKFSMTQIDCTHTKGGLSLDSVVVYPSSCK 285          
BLAST of DY262711 vs. ExPASy Swiss-Prot
Match: P2A11_ARATH (F-box protein PP2-A11 OS=Arabidopsis thaliana GN=PP2A11 PE=1 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 3.393e-79
Identity = 150/286 (52.45%), Postives = 196/286 (68.53%), Query Frame = 3
Query:  285 MGANFSALFRDPNGATPGSAAAKPGLGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFGDLKKDLGKRVIYARLCRMNSFDGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWWFEVDGELEFPFPAGTYSIFMRLQLGRASKRFGRRICSTEHVHGWG*KAC--AVSAMDIRRSACFIECNLNDPGKWVSIPWG---TSKSKREIFDQDQFLPMQIDWPPTKGVLCLNSVL*GPINVK 1127
            MG+ FS   ++ +         +PGLGDLPESCVALI+ +LDP EIC+ ++LN AF GAS ADFVWESKLPP+Y+ ++E++ G    +L KR I+  L R+NSFD G KK W+DK TGG+CL  SAKGL+ITGIDDRRYW+HIP+++SRF SVAY+QQIWWF+VDGE++FPFPAGTYS++ RLQLG+  KRFG ++  TE VHGW  K     +S  D + S+   +C L + G W     G     KSK     + +F   QID   TKG LC++SV+  P + K
Sbjct:    1 MGSGFSLFQKNLSSCYGDRDLLQPGLGDLPESCVALILQNLDPVEICRFSKLNTAFHGASWADFVWESKLPPDYKLILEKILGSFPDNLRKRDIFTFLSRVNSFDEGNKKAWVDKRTGGLCLCTSAKGLSITGIDDRRYWSHIPSDDSRFASVAYVQQIWWFQVDGEIDFPFPAGTYSVYFRLQLGKPGKRFGWKVVDTEQVHGWNIKPVRFQLSTEDGQHSSS--QCMLTEAGNWSHYHAGDFVVGKSKSS-STKIKFSMTQIDCTHTKGGLCVDSVVVYPSSCK 283          
BLAST of DY262711 vs. ExPASy Swiss-Prot
Match: P2A13_ARATH (F-box protein PP2-A13 OS=Arabidopsis thaliana GN=PP2A13 PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 7.320e-74
Identity = 142/255 (55.69%), Postives = 179/255 (70.20%), Query Frame = 3
Query:  360 LGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFGDLK-KDLGKRVIYARLCRMNSFDGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWWFEVDGELEFPFPAGTYSIFMRLQLGRASKRFGRRICSTEHVHGWG*K----ACAVSAMDIRRSACFIECNLNDPGKWVSIPWGTSK-SKREIFDQDQFLPMQIDWPPTKGVLCLNSVL 1106
            L DLPE+CVALI+  LDP EIC+LARLNR FR AS ADF+WESKLP NYR +  +VF ++    L K+ +YA+L + N FD GTK++W+DK+TG +CLSIS+K L ITGIDDRRYW+HIPT+ESRF S AY+QQIWWFEV GE E  FP+GTYS+F R+QLG+ SKR GRRIC++EH+HGW  K      A S      S C++    N+PG W     G  K +  ++    +F   QID   TKG LC++SVL
Sbjct:   25 LVDLPENCVALIMTRLDPPEICRLARLNRMFRRASSADFIWESKLPANYRVIAHKVFDEITLTKLIKKDLYAKLSQPNLFDDGTKELWIDKNTGRLCLSISSKALRITGIDDRRYWSHIPTDESRFQSAAYVQQIWWFEVGGEFEIQFPSGTYSLFFRIQLGKTSKRLGRRICNSEHIHGWDIKPVRFQLATSDNQQAVSLCYLN---NNPGSWSHYHVGDFKVTNPDVSTGIKFSMTQIDCTHTKGGLCIDSVL 276          
BLAST of DY262711 vs. ExPASy Swiss-Prot
Match: P2A15_ARATH (F-box protein PP2-A15 OS=Arabidopsis thaliana GN=PP2A15 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 2.209e-62
Identity = 138/296 (46.62%), Postives = 178/296 (60.14%), Query Frame = 3
Query:  285 MGANFSALFRDPNGATPGSAAAKPGLGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFGDLKKDLGKRVIYARLCRMNSFDGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWWFEVDGELEFPFPAGTYSIFMRLQLGRASKRFGRRICSTEHVHGWG*KAC--AVSAMDIRRSACFIECNLND-----------PGKWVSIPWGT-----SKSKREIFDQDQFLPMQIDWPPTKGVLCLNSVL*GPI 1118
            MG++ S L    NG   G     PGLGD+PESCVA +   L P EIC LA LNR+FRGA+ +D VWE KLP NY+ L++ +  +    L K+ I+A L R   FD   K+VW+D+ TG VC++ISA+G++ITGI+DRRYWN IPTEESRF  VAYLQQIWWFEVDG + F  P G YS+  R+ LGR +KR GRR+C  E  HGW  K    ++S  D + ++C  E  L+D            G W+    G      S+   EI    Q+   QID   +KG LC++SV   PI
Sbjct:    1 MGSSLSNLNDGTNGLAMG-----PGLGDIPESCVACVFMYLTPPEICNLAGLNRSFRGAASSDSVWEKKLPENYQDLLDLLPPERYHSLSKKDIFAVLSRPIPFDDDNKEVWIDRVTGRVCMAISARGMSITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGTVRFHLPPGVYSLSFRIHLGRFTKRLGRRVCHFELTHGWDLKPVRFSLSTSDGQEASC--EYYLDDVERNEALGKHKRGYWIEYRVGEFIVNGSEPSTEI----QWSMKQIDCTHSKGGLCVDSVFINPI 285          
BLAST of DY262711 vs. ExPASy Swiss-Prot
Match: P2A14_ARATH (F-box protein PP2-A14 OS=Arabidopsis thaliana GN=PP2A14 PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 1.174e-55
Identity = 114/265 (43.02%), Postives = 158/265 (59.62%), Query Frame = 3
Query:  357 GLGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFGDLK----KD---LGKRVIYARLCRMNSFDGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWWFEVDGELEFPFPAGTYSIFMRLQLGRASKRFGRRICSTEHVHGWG*KACAVSAMDIRRSACFIECNLNDPGKWVSIPWGTSKSKREIFD-QDQFLPMQIDWPPTKGVLCLNSVL*GPINVK 1127
            GL D+PE+C+  +   ++P EIC LAR+N++F  AS +D VWE KLP NY+ L+  +  D +    KD     K+ IYARLCR N FD GTK+ WLDK +G V L+IS K + ITGIDDRRYW HI ++ESRF S+ YL+QIWW E  G++ F F  G YS+  ++QLG+  ++ GR+ CS + VHGW  K                E +L++ G+WV    G    + +      +F  +QID   TKG LCL+ V+  P   +
Sbjct:   20 GLEDVPENCITAMFMYMEPPEICLLARVNKSFHRASRSDAVWEDKLPSNYKFLVRRILEDQQQVGVKDKLIYRKKEIYARLCRPNLFDTGTKEAWLDKRSGKVFLAISPKAMKITGIDDRRYWEHISSDESRFGSITYLRQIWWLEAVGKIRFEFAPGKYSLLFKIQLGKPIRKCGRKTCSLDQVHGWDIKPVRFQLSTSDGQCAMSERHLDESGRWVYHHAGDFVVENQNSPVWVKFSMLQIDCTHTKGGLCLDCVIICPFEYR 284          
BLAST of DY262711 vs. ExPASy Swiss-Prot
Match: PP2B8_ARATH (Putative F-box protein PP2-B8 OS=Arabidopsis thaliana GN=PP2B8 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 4.660e-20
Identity = 52/144 (36.11%), Postives = 80/144 (55.56%), Query Frame = 3
Query:  360 LGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFGDLKKDLGKRVIYARLC-RMNSFDGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWWFEVDGEL 788
            L DLPE CV++I+    P + C LA +++ F  A  +D VWE  +PP Y +LI +      K L K+ +Y  LC +    D G K +W++K+    C+ ISA  LAI   +  + W  IP  ++RF +VA L ++  FE+ G +
Sbjct:   36 LDDLPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLISQ--SRAFKFLSKKELYFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIAWGNSPQSWRWIPDPQARFETVAELLEVCLFEIRGRI 177          
BLAST of DY262711 vs. ExPASy Swiss-Prot
Match: P2B10_ARATH (F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 4.660e-20
Identity = 74/239 (30.96%), Postives = 108/239 (45.19%), Query Frame = 3
Query:  372 PESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLI--EEVFGDLKKDLGKRVIYARLCRMNS-FDGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWWFEVDGELEFPF--PAGTYSIFMRLQLGRASKRFGRRICSTEHVHGWG*KACAVSAMDIRRSACFIEC------NLNDPGK----WVSIPWGTSKSKREIFDQDQ 1043
            PE C++ II   +P + C  A +++ F     +D +WE  LP +Y +LI    VF        K+ +Y  LC     FD   K VWL+K++G  CL +SA  L+I   D+ +YW  IP  ESRF  VA L+ + WFE+ G        P   YS ++  +     K +G +  + E   G       V     RR  CF E       N+  P +    W+ I  G   +   I D D+
Sbjct:   18 PEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLIPPSRVFSS------KKELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWIPIPESRFEKVAKLRDVCWFEIRGRTNTRVLSPRTRYSAYIVFK--GVDKCYGFQNVAIEAAVG------VVGQEPSRRLICFSEAIRRGRRNVVKPKQREDGWMEIELGEFFNDGGIMDNDE 242          
BLAST of DY262711 vs. ExPASy Swiss-Prot
Match: FB95_ARATH (F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 5.697e-18
Identity = 53/156 (33.97%), Postives = 76/156 (48.72%), Query Frame = 3
Query:  336 GSAAAKPGLGD---LPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEE--VFGDLKKDLGKRVIYARLCRMNSF-DGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWWFEVDGE 785
            G     PG      LPE C++ II    P + C  A +++ F  A  +D VW+  LPP Y +L+    VF        K+ +Y  LC      + G K  WL+K++G  C+ +S+K L IT      YW  I   ESRF  +A L  + WFE+ G+
Sbjct:   50 GGEIVSPGTSPFDVLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVSRSRVFAS------KKELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWGSSPEYWQWISIPESRFNKIAELLDVCWFEIRGK 199          
BLAST of DY262711 vs. ExPASy Swiss-Prot
Match: PP2B1_ARATH (F-box protein PP2-B1 OS=Arabidopsis thaliana GN=PP2B1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.693e-17
Identity = 45/140 (32.14%), Postives = 73/140 (52.14%), Query Frame = 3
Query:  369 LPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFGDLKKDLGKRVIYARLCRMNSFDGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWWFEVDGEL 788
            LPE C++ +I    P + C +A ++++ + A+ +D VWE  LP  Y +L+ +    L K   K +  +        + G K  W++K++G  C  +SA  L I   D   YW  I   ES+F  VA L+ + WFEV G++
Sbjct:   35 LPEDCISKVISHTSPRDACVVASVSKSVKSAAQSDLVWEMFLPSEYSSLVLQSANHLSK---KEIFLSLADNSVLVENGKKSFWVEKASGKKCYMLSAMELTIIWGDSPAYWKWITVPESKFEKVAELRNVCWFEVRGKI 171          
BLAST of DY262711 vs. ExPASy Swiss-Prot
Match: P2B15_ARATH (F-box protein PP2-B15 OS=Arabidopsis thaliana GN=PP2B15 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 9.095e-16
Identity = 46/141 (32.62%), Postives = 72/141 (51.06%), Query Frame = 3
Query:  369 LPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFGDLKKDLGKRVIYARLCRMNSFDGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWWFEVDGELE 791
            LPE+CVA I+    P +    A ++  FR A  +DFVWE  LP +Y  +I       +    K+ +Y  LC     D G K   ++K +G +   +S++ L+IT  D R YW+  P  +SRF+    L    W E+ G+++
Sbjct:    2 LPEACVATILSFTTPADTISSAAVSSVFRVAGDSDFVWEKFLPTDYCHVISRSTDPHRIFSSKKELYRCLCESILIDNGRKIFKIEKLSGKISYILSSRDLSITWSDQRHYWSWSPRSDSRFSEGVQLIMTDWLEIIGKIQ 142          
The following BLAST results are available for this feature:
BLAST of DY262711 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
P2A12_ARATH1.738e-8358.62F-box protein PP2-A12 OS=Arabidopsis thaliana GN=P... [more]
P2A11_ARATH3.393e-7952.45F-box protein PP2-A11 OS=Arabidopsis thaliana GN=P... [more]
P2A13_ARATH7.320e-7455.69F-box protein PP2-A13 OS=Arabidopsis thaliana GN=P... [more]
P2A15_ARATH2.209e-6246.62F-box protein PP2-A15 OS=Arabidopsis thaliana GN=P... [more]
P2A14_ARATH1.174e-5543.02F-box protein PP2-A14 OS=Arabidopsis thaliana GN=P... [more]
PP2B8_ARATH4.660e-2036.11Putative F-box protein PP2-B8 OS=Arabidopsis thali... [more]
P2B10_ARATH4.660e-2030.96F-box protein PP2-B10 OS=Arabidopsis thaliana GN=P... [more]
FB95_ARATH5.697e-1833.97F-box protein At2g02240 OS=Arabidopsis thaliana GN... [more]
PP2B1_ARATH3.693e-1732.14F-box protein PP2-B1 OS=Arabidopsis thaliana GN=PP... [more]
P2B15_ARATH9.095e-1632.62F-box protein PP2-B15 OS=Arabidopsis thaliana GN=P... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100CH08RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262711 ID=DY262711; Name=DY262711; organism=Citrus clementina; type=EST; length=1217bp
CGCAATTTTTTCTCTGTCTCCGTTTCTCGTCAAACAAACAGACAAAACAC
AAAAACTAAAGAATCAAACTTCAGAAATGCAATACGCGTCCGTGAGACAA
GACAACATCTGCAAGTTCCCTCTGAACCTTTTTGCTATCTCTCTCTCTTT
CTTTGAAGGCCTCCCTTTTGATTCTCAGAACTTTCTAGTTCTCTGCGTTC
TTTCTTACTTTCTTTCGTTCTTTCTTTTCTTTTTCCTCTGTTTTTTGGGG
CTTGCTCTGTTTTTTAATTTTGATTTTGAGCTTGATGGGTGCAAATTTTT
CTGCTTTATTTCGGGACCCAAACGGCGCAACACCTGGTTCCGCAGCAGCA
AAGCCGGGACTGGGTGATTTGCCGGAGAGTTGTGTGGCTTTGATTATTGG
GTCTTTGGATCCGACAGAGATTTGCAAATTGGCTAGATTGAATAGAGCTT
TTCGTGGGGCTTCTTTGGCCGATTTCGTCTGGGAATCTAAATTGCCTCCT
AATTATCGAACTTTGATTGAAGAAGTGTTTGGTGATTTGAAAAAGGATTT
GGGTAAGAGAGTGATTTATGCCAGGCTTTGTCGAATGAATTCTTTTGATG
GTGGCACCAAGAAAGTTTGGCTAGATAAGAGTACTGGGGGTGTCTGTCTA
TCCATTTCGGCCAAGGGGCTGGCGATTACTGGTATTGATGATCGGAGATA
TTGGAATCATATTCCAACCGAGGAATCTAGATTCACTTCAGTTGCATATC
TTCAGCAAATTTGGTGGTTTGAAGTTGATGGGGAGTTGGAGTTTCCTTTC
CCGGCTGGAACTTATAGCATATTCATGAGACTGCAGTTAGGACGGGCATC
CAAGAGATTTGGTCGCAGGATCTGCAGCACCGAGCATGTCCACGGTTGGG
GATAGAAAGCCTGTGCAGTTTCAGCTATGGACATCAGACGGTCAGCATGC
TTCATCGAATGCAATTTGAATGACCCGGGAAAATGGGTCAGTATCCCTTG
GGGGACTTCAAAGTCGAAAAGGGAAATCTTTGACCAAGATCAATTCCTCC
CGATGCAAATCGATTGGCCCCCCACCAAGGGGGTTCTTTGTTTAAATTCG
GTCCTATAAGGCCCAATTAATGTTAAGAAAGGGTAAAACATTTTTTAAAC
GGCCTGGGCCCCCCCAAAGGGGGGAAAAAGGAAAAACCCCCCCCAGTTTG
GAAGAAGGGGTGGGGTT
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