DY262712
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY262712 vs. ExPASy Swiss-Prot
Match: PTBP2_ARATH (Polypyrimidine tract-binding protein homolog 2 OS=Arabidopsis thaliana GN=At5g53180 PE=2 SV=1) HSP 1 Score: 459.529 bits (1181), Expect = 1.731e-128 Identity = 236/304 (77.63%), Postives = 257/304 (84.54%), Query Frame = 2 Query: 197 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQXXXXXXXXXXXXEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAGHLEGLPHGLFCFWPCQKIANVDKKGGLRL*IQSLKVKKLFVAEGTFE 1108 M+SVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFG VVNTKCNVGANRNQAFIEF DLNQ EPAQVRGKTVYLQYSNRQEIVNNKTTADV GNVLLVTIEG DAR+VSIDVLHLVFSAFGFVHKITTFEKTAG+QALVQF+D ETA++AK ALDGRSIPRYLL E +G C+L+ITYSAHTDL+VKFQSHRSRDYTNPYLPVAPSAID++GQ++VG+DGKK+EPESNVLLASIENMQYA L+ L F QKIA DK GG++ IQ V+ VA+ E Sbjct: 1 MSSVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAIQMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVVGNVLLVTIEGDDARMVSIDVLHLVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLALDGRSIPRYLLAETVGQCSLKITYSAHTDLTVKFQSHRSRDYTNPYLPVAPSAIDSTGQVAVGVDGKKMEPESNVLLASIENMQYAVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQYSDVQTAVVAKEALE 304 HSP 2 Score: 102.834 bits (255), Expect = 4.112e-21 Identity = 58/109 (53.21%), Postives = 71/109 (65.14%), Query Frame = 2 Query: 527 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPV 853 NVLL +IE V++DVLH+VF+AFG V KI F+K G QAL+Q+SD +TA AK AL+G I + G C L ITYS HTDLS+K + RSRDYT P PV Sbjct: 244 NVLLASIENMQYA-VTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQYSDVQTAVVAKEALEGHCI------YDGGFCKLHITYSRHTDLSIKVNNDRSRDYTMPNPPV 345
BLAST of DY262712 vs. ExPASy Swiss-Prot
Match: PTBP1_ARATH (Polypyrimidine tract-binding protein homolog 1 OS=Arabidopsis thaliana GN=PTB PE=2 SV=1) HSP 1 Score: 379.407 bits (973), Expect = 2.276e-104 Identity = 194/302 (64.24%), Postives = 230/302 (76.16%), Query Frame = 2 Query: 203 SVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQXXXXXXXXXXXXEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAGHLEGLPHGLFCFWPCQKIANVDKKGGLRL*IQSLKVKKLFVAEGTFE 1108 S S Q QFRYTQ PSKV+HLRNLPWEC EEELI+L K FGK+VNTK NVGANRNQAF+EFADLNQ EPAQ+RGKTVY+QYSNR EIVNN++ DV GNVLLVT EG ++ VSIDV+HLVFSAFGFVHKI TFEK AGFQALVQF+D ETAS+A++ALDGRSIPRYLL ++G C+LR++YSAHTDL++KFQSHRSRDYTNPYLPV +A+D S Q ++G DGKK+E +SNVLL IENMQYA ++ L + QKIA +K G + IQ + +A+ E Sbjct: 2 SSSGQTQFRYTQTPSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEFADLNQAISMVSYYASSSEPAQIRGKTVYIQYSNRHEIVNNQSPGDVPGNVLLVTFEGVESHEVSIDVIHLVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSALDGRSIPRYLLSAHVGSCSLRMSYSAHTDLNIKFQSHRSRDYTNPYLPVNQTAMDGSMQPALGADGKKVESQSNVLLGLIENMQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEALE 303 HSP 2 Score: 94.3597 bits (233), Expect = 1.462e-18 Identity = 56/107 (52.34%), Postives = 68/107 (63.55%), Query Frame = 2 Query: 527 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 847 NVLL IE V++DVLH VFSA+G V KI FEK QAL+Q+SD TA+ AK AL+G I + G C LR++YS HTDL+VK S +SRDYT P L Sbjct: 243 NVLLGLIENMQYA-VTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEALEGHCI------YDGGYCKLRLSYSRHTDLNVKAFSDKSRDYTLPDL 342
BLAST of DY262712 vs. ExPASy Swiss-Prot
Match: PTBP3_ARATH (Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis thaliana GN=At1g43190 PE=2 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 2.405e-29 Identity = 81/206 (39.32%), Postives = 121/206 (58.74%), Query Frame = 2 Query: 245 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQXXXXXXXXXXXXEPAQVRGKTVYLQYSNRQEIV----NNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 850 SKV+H+RN+ E +E +L++L +PFG + TK + +NQA ++ D++ +P +RG+ VY+Q+S+ QE+ N D +LLVTI +++DVLH VFS +GFV K+ TF+K+AGFQAL+Q+ + A+SA+ AL GR+I G C L I +S +L V + + RSRDYTNP LP Sbjct: 5 SKVVHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVSSAVSALQFFTNV-QPT-IRGRNVYVQFSSHQELTTIEQNIHGREDEPNRILLVTIHHM-LYPITVDVLHQVFSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNI-------YDGCCQLDIQFSNLEELQVNYNNDRSRDYTNPNLP 198
BLAST of DY262712 vs. ExPASy Swiss-Prot
Match: PTBP2_HUMAN (Polypyrimidine tract-binding protein 2 OS=Homo sapiens GN=PTBP2 PE=1 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 1.010e-27 Identity = 86/233 (36.91%), Postives = 116/233 (49.79%), Query Frame = 2 Query: 242 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQXXXXXXXXXXXXEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVL--LVTIEGTDARL----------------------------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 850 PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A + +R + +Y+QYSN +E+ + T A VL + ++ + L V++DVLH +FS FG V KI TF K FQAL+Q+ D A AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELA--TEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLP 278
BLAST of DY262712 vs. ExPASy Swiss-Prot
Match: PTBP2_RAT (Polypyrimidine tract-binding protein 2 OS=Rattus norvegicus GN=Ptbp2 PE=2 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 1.320e-27 Identity = 86/233 (36.91%), Postives = 116/233 (49.79%), Query Frame = 2 Query: 242 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQXXXXXXXXXXXXEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVL--LVTIEGTDARL----------------------------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 850 PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A + +R + +Y+QYSN +E+ + T A VL + ++ + L V++DVLH +FS FG V KI TF K FQAL+Q+ D A AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELA--TEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLP 278
BLAST of DY262712 vs. ExPASy Swiss-Prot
Match: PTBP2_MOUSE (Polypyrimidine tract-binding protein 2 OS=Mus musculus GN=Ptbp2 PE=1 SV=2) HSP 1 Score: 124.405 bits (311), Expect = 1.320e-27 Identity = 86/233 (36.91%), Postives = 116/233 (49.79%), Query Frame = 2 Query: 242 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQXXXXXXXXXXXXEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVL--LVTIEGTDARL----------------------------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 850 PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A + +R + +Y+QYSN +E+ + T A VL + ++ + L V++DVLH +FS FG V KI TF K FQAL+Q+ D A AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELA--TEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLP 278
BLAST of DY262712 vs. ExPASy Swiss-Prot
Match: PTBP1_RAT (Polypyrimidine tract-binding protein 1 OS=Rattus norvegicus GN=Ptbp1 PE=1 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 1.320e-27 Identity = 94/261 (36.02%), Postives = 132/261 (50.57%), Query Frame = 2 Query: 227 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQXXXXXXXXXXXXEPAQVRGKTVYLQYSNRQEIVN----NKTTADVA---------GNVLLV-TIEGTDARL-------------------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--AIDASGQLSVGLDG 904 R T PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE + + P +RG+ +Y+Q+SN +E+ N+ A A GN+ L + DA + V++DVLH +FS FG V KI TF K FQAL+Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P LP S ++D + + G G Sbjct: 51 RSTGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMST-EEAANTMVNYYTSVAPV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGAPG 300
BLAST of DY262712 vs. ExPASy Swiss-Prot
Match: PTBP1_MOUSE (Polypyrimidine tract-binding protein 1 OS=Mus musculus GN=Ptbp1 PE=1 SV=2) HSP 1 Score: 123.635 bits (309), Expect = 2.251e-27 Identity = 92/255 (36.08%), Postives = 130/255 (50.98%), Query Frame = 2 Query: 242 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQXXXXXXXXXXXXEPAQV-RGKTVYLQYSNRQEIVNNKTTADV-------------AGNVLLV-TIEGTDARL-------------------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--AIDASGQLSVGL 898 PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE +N A V RG+ +Y+Q+SN +E+ + + V +GN+ L + DA + V++DVLH +FS FG V KI TF K FQAL+Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P LP S ++D + + GL Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIE---MNTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDSSPNQVRAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGL 298
BLAST of DY262712 vs. ExPASy Swiss-Prot
Match: PTBP1_HUMAN (Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1 PE=1 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 2.940e-27 Identity = 92/254 (36.22%), Postives = 130/254 (51.18%), Query Frame = 2 Query: 242 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQXXXXXXXXXXXXEPAQVRGKTVYLQYSNRQEIVN----NKTTADVA---------GNVLLV-TIEGTDARL-------------------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--AIDASGQLSVGL 898 PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE + + P +RG+ +Y+Q+SN +E+ N+ A A GN+ L + DA + V++DVLH +FS FG V KI TF K FQAL+Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P LP S ++D + + GL Sbjct: 57 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEM-NTEEAANTMVNYYTSVTPV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGL 299
BLAST of DY262712 vs. ExPASy Swiss-Prot
Match: PTBP1_BOVIN (Polypyrimidine tract-binding protein 1 OS=Bos taurus GN=PTBP1 PE=2 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 3.840e-27 Identity = 92/254 (36.22%), Postives = 129/254 (50.79%), Query Frame = 2 Query: 242 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQXXXXXXXXXXXXEPAQVRGKTVYLQYSNRQEIVN----NKTTADVA---------GNVLLV-TIEGTDARL-------------------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--AIDASGQLSVGL 898 PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE + P +RG+ +Y+Q+SN +E+ N+ A A GN+ L + DA + V++DVLH +FS FG V KI TF K FQAL+Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P LP S ++D + + GL Sbjct: 57 PSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEM-HTEEAANTMVNYYTSVTPV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGL 299 The following BLAST results are available for this feature:
BLAST of DY262712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY262712 ID=DY262712; Name=DY262712; organism=Citrus clementina; type=EST; length=1196bpback to top |