DY262715

Overview
NameDY262715
Unique NameDY262715
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1220
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262715 vs. ExPASy Swiss-Prot
Match: HEM3_ARATH (Porphobilinogen deaminase, chloroplastic OS=Arabidopsis thaliana GN=HEMC PE=1 SV=1)

HSP 1 Score: 351.288 bits (900), Expect = 6.828e-96
Identity = 195/287 (67.94%), Postives = 218/287 (75.96%), Query Frame = 2
Query:  191 CYPGSVSLVGFSSPRLKTPSFPKSLKKRSF-GLVRASAAVE--TKVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPARCSGGYWELLCEAMTKKWANYLESLNHGEKKNLLLLVKKPFLGT 1042
            C  GSVS +GFS P++ +P+  K  +K+S  G V+A  AVE  T+ AIIRIGTRGSPLALAQA+ETR KL   HPEL ++GAI I IIKTTGDKILSQPLADIGGKGLFTKEIDEALIN  IDIAVHSMKDVPTYLPEKTILPCNL REDVRDAFI          PAGS+VGTASLRRKSQILH+YP+L V ENFRGNVQTRL KL    VQATLLALAGLKRLSMTENV +ILS+D+MLPA   G    + C     K A YL SLNH E+  L +  ++ FL T
Sbjct:   27 CSLGSVSAIGFSLPQISSPALGKCRRKQSSSGFVKACVAVEQKTRTAIIRIGTRGSPLALAQAYETREKLKKKHPELVEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVPTYLPEKTILPCNLPREDVRDAFICLTAATLAELPAGSVVGTASLRRKSQILHKYPALHVEENFRGNVQTRLSKLQGGKVQATLLALAGLKRLSMTENVASILSLDEMLPAVAQGAI-GIACRTDDDKMATYLASLNH-EETRLAISCERAFLET 311          
BLAST of DY262715 vs. ExPASy Swiss-Prot
Match: HEM3_PEA (Porphobilinogen deaminase, chloroplastic OS=Pisum sativum GN=HEMC PE=1 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 2.196e-94
Identity = 188/257 (73.15%), Postives = 207/257 (80.54%), Query Frame = 2
Query:  287 VRASAAVE-----TKVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPARCSGGYWELLCEAMTKKWANYLESLNHGEKKNLLLLVKKPFLGT 1042
            +RAS AVE      K A+IRIGTRGSPLALAQAHETR+KLMA H ELA+EGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALIN  IDIAVHSMKDVPTYLPE+TILPCNL REDVRDAFI          PAGS++GTASLRRKSQILHRYPSL V +NFRGNVQTRLRKL+E VV+ATLLALAGLKRL+MTENVT+ LS+DDMLPA   G    + C +   K A YL SLNH E+  L +  ++ FL T
Sbjct:   44 IRASLAVEQQTQQNKTALIRIGTRGSPLALAQAHETRDKLMASHTELAEEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGDIDIAVHSMKDVPTYLPEETILPCNLPREDVRDAFISLSAASLADLPAGSVIGTASLRRKSQILHRYPSLTVQDNFRGNVQTRLRKLSEGVVKATLLALAGLKRLNMTENVTSTLSIDDMLPAVAQGAI-GIACRSNDDKMAEYLASLNH-EETRLAISCERAFLTT 298          
BLAST of DY262715 vs. ExPASy Swiss-Prot
Match: HEM3_ORYSJ (Porphobilinogen deaminase, chloroplastic OS=Oryza sativa subsp. japonica GN=HEMC PE=2 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 1.023e-83
Identity = 170/254 (66.93%), Postives = 197/254 (77.56%), Query Frame = 2
Query:  287 VRASAAVET----KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPARCSGGYWELLCEAMTKKWANYLESLNHGEKKNLLLLVKKPFL 1036
            VRA+ AV+     KV++IRIGTRGSPLALAQAHETR+KL A H ELA+EGA++IVIIKTTGD IL +PLADIGGKGLFTKEID+AL+  +IDIAVHSMKDVPTYLPE TILPCNL REDVRDAFI          PAGS+VG+ASLRR+SQIL++YPSLKV+ NFRGNVQTRLRKL E  V ATLLALAGLKRL+M E  T++LSVD+MLPA   G    + C +      NYL SLNH E   L +  ++ FL
Sbjct:   33 VRAAVAVQAEAQAKVSLIRIGTRGSPLALAQAHETRDKLKAAHSELAEEGAVEIVIIKTTGDMILDKPLADIGGKGLFTKEIDDALLQGRIDIAVHSMKDVPTYLPEGTILPCNLPREDVRDAFICLTASSLAELPAGSVVGSASLRRQSQILYKYPSLKVV-NFRGNVQTRLRKLKEGDVHATLLALAGLKRLNMAETATSVLSVDEMLPAVAQGAI-GIACRSSDDTMMNYLSSLNH-EDTRLAVACEREFL 283          
BLAST of DY262715 vs. ExPASy Swiss-Prot
Match: HEM3_PARDP (Porphobilinogen deaminase OS=Paracoccus denitrificans (strain Pd 1222) GN=hemC PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 2.222e-54
Identity = 113/199 (56.78%), Postives = 144/199 (72.36%), Query Frame = 2
Query:  326 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPARCSG 922
            IRIGTRGS LALAQAHETR++LMA H   A   A +IV+IKTTGD++L +PL +IGGKGLFT+EI++AL+  +IDIAVHSMKD+PT  PE  ++ C L REDVRDAF+          P G++VG++SLRR++Q+  R P LK++E FRGNVQTRL+KL + V  AT LA+AGL RL M       +  D+MLPA   G
Sbjct:   11 IRIGTRGSALALAQAHETRDRLMAAHGLAAD--AFRIVVIKTTGDRVLDRPLKEIGGKGLFTREIEDALLAHEIDIAVHSMKDMPTIQPEGLVIDCYLPREDVRDAFVSAQFAAISELPQGAVVGSSSLRRRAQLAARRPDLKLVE-FRGNVQTRLKKLEDGVAVATFLAMAGLTRLGMLHVARGAVEPDEMLPAVAQG 206          
BLAST of DY262715 vs. ExPASy Swiss-Prot
Match: HEM3_NITWN (Porphobilinogen deaminase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=hemC PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 4.337e-50
Identity = 111/193 (57.51%), Postives = 134/193 (69.43%), Query Frame = 2
Query:  332 IGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPA 910
            IGTRGSPLALAQAHE R++L   H ++A E  I I  I+T+GD I  +PL D+GGKGLFTKEI+EAL+   ID AVHS KDVPT+LP+ T LP  L REDVRD FI          PAG+ VGTASLRR++ +L   P LKV  + RGNV+TRLRK++     ATLLALAGL RL + +  T IL  D+ LPA
Sbjct:   13 IGTRGSPLALAQAHEVRDRLARAH-QVAPE-RIAIKTIRTSGDAIQDRPLFDVGGKGLFTKEIEEALLAGTIDFAVHSSKDVPTFLPDATWLPAFLPREDVRDVFISPHAGSLNDLPAGATVGTASLRRQAMVLKLRPDLKV-NSLRGNVETRLRKISVGEADATLLALAGLNRLGLQDKATRILETDEFLPA 202          
BLAST of DY262715 vs. ExPASy Swiss-Prot
Match: HEM3_NITHX (Porphobilinogen deaminase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=hemC PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 2.811e-49
Identity = 113/193 (58.55%), Postives = 133/193 (68.91%), Query Frame = 2
Query:  332 IGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPA 910
            IGTRGS LALAQA+E R++L   H ++A E  I I  I+T+GD I  +PL D+GGKGLFTKEI+EAL+   ID AVHS KDVPT+LP+ T LP  L REDVRDAFI          PAGSIVGTASLRR++ +L   P LKV    RGNV+TRLRKL      ATLLALAGL RL + +  T IL  D+ LPA
Sbjct:   13 IGTRGSALALAQANEVRDRLARAH-QVAPE-RIVIKTIRTSGDAIQDRPLFDVGGKGLFTKEIEEALLAGSIDFAVHSSKDVPTFLPDATWLPAFLPREDVRDAFISPRAASLNDLPAGSIVGTASLRRQAMVLRLRPDLKV-SVIRGNVETRLRKLVAGEADATLLALAGLNRLGLQDRATRILETDEFLPA 202          
BLAST of DY262715 vs. ExPASy Swiss-Prot
Match: HEM3_RHILO (Porphobilinogen deaminase OS=Rhizobium loti GN=hemC PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.105e-45
Identity = 104/199 (52.26%), Postives = 135/199 (67.84%), Query Frame = 2
Query:  326 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPARCSG 922
            ++IGTRGSPLALAQAHET+ +LMA H   A+  A ++V+I T+GD+I  +PL++ GGKGLFTKEI+EAL+   IDIAVHS KD+PT LP+   L   L RED RDAF+            G+ VG++SLRR++ I    P L V+  FRGNVQTRLRKL+E V   T+LA AGLKRL +    T+++ +D   PA   G
Sbjct:    5 LKIGTRGSPLALAQAHETQARLMAAHGLPAE--AFEVVVISTSGDRIQDRPLSEAGGKGLFTKEIEEALLAGAIDIAVHSSKDMPTQLPDGLELSAFLPREDARDAFVGKAAKTIADLLRGAKVGSSSLRRQALIRRMRPDLDVV-MFRGNVQTRLRKLDEGVAAGTILAYAGLKRLGLEHVATDLMPLDIFPPAPGQG 200          
BLAST of DY262715 vs. ExPASy Swiss-Prot
Match: HEM3_PELCD (Porphobilinogen deaminase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=hemC PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.885e-45
Identity = 101/195 (51.79%), Postives = 129/195 (66.15%), Query Frame = 2
Query:  326 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPA 910
            +RIGTR S LAL QA   + +L  LHP L+    + +V I T GDKIL  PLA +GGKGLF KEI+EAL +  ID+AVHSMKDVP+ LP   ILPC   RED RDA +          P G+ +GT++LRR++Q+LHR P L ++ + RGNV+TRLRK+ E  +   +LA AGLKRL + E +   LSVD  LPA
Sbjct:    6 LRIGTRASRLALWQAEWVQQQLETLHPGLS----VVLVPITTKGDKILDVPLAKVGGKGLFVKEIEEALYDGSIDLAVHSMKDVPSVLPPGLILPCIPPREDPRDALVTPDGRSFAQLPQGARIGTSALRRQAQLLHRRPDLDIV-SLRGNVETRLRKMEEEDMDGIVLAAAGLKRLELAERIAEYLSVDVSLPA 195          
BLAST of DY262715 vs. ExPASy Swiss-Prot
Match: HEM3_AGRT5 (Porphobilinogen deaminase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=hemC PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.085e-44
Identity = 103/198 (52.02%), Postives = 129/198 (65.15%), Query Frame = 2
Query:  329 RIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPARCSG 922
            RIGTRGSPLALAQA+ETR++LMA H     E   +IV++ T GD+I  + L++IGGKGLFT+E++  L++ ++DIAVHS KD+PT LPE   L   L RED+RDAFI          P G++VG+ASLRR++ I    P L V+  FRG V TRLRKL E    ATLLA AGLKRL      T IL   +  PA   G
Sbjct:    7 RIGTRGSPLALAQAYETRSRLMAAHG--LPEEMFEIVVLSTKGDRITDRALSEIGGKGLFTEELENQLLSGELDIAVHSSKDMPTVLPEGLHLSAFLPREDMRDAFIGRTAPKLLELPQGAVVGSASLRRQALIRRLRPDLNVIV-FRGLVDTRLRKLEEGQADATLLAFAGLKRLGKDNVPTEILDPKEFPPAPAQG 201          
BLAST of DY262715 vs. ExPASy Swiss-Prot
Match: HEM3_ACIF5 (Porphobilinogen deaminase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=hemC PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.085e-44
Identity = 95/195 (48.72%), Postives = 132/195 (67.69%), Query Frame = 2
Query:  326 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPA 910
            +RIGTR SPLA+ QA   R  L+ LHP +A    ++I+ + T+GD +L  PL  +GGKGLF KEI++AL   ++D+AVHSMKDVP   P+   +   + REDVRDAF+          P G+ VG++SLRR++Q+L RYP L+V E+ RGNV TRLR+L+E    A +LA AGLKRL + + +T++L +D  LPA
Sbjct:    5 LRIGTRASPLAVWQAEHVRAALLRLHPGMA----VEIITMTTSGDVLLDAPLHALGGKGLFVKEIEDALQQRRVDVAVHSMKDVPALQPDGLEIVAIMAREDVRDAFVSNTFLHPDALPEGARVGSSSLRRRAQLLERYPHLRV-EDLRGNVATRLRRLDEGHYDAIILAAAGLKRLGLPDRITHLLDIDRSLPA 194          
The following BLAST results are available for this feature:
BLAST of DY262715 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 475
Match NameE-valueIdentityDescription
HEM3_ARATH6.828e-9667.94Porphobilinogen deaminase, chloroplastic OS=Arabid... [more]
HEM3_PEA2.196e-9473.15Porphobilinogen deaminase, chloroplastic OS=Pisum ... [more]
HEM3_ORYSJ1.023e-8366.93Porphobilinogen deaminase, chloroplastic OS=Oryza ... [more]
HEM3_PARDP2.222e-5456.78Porphobilinogen deaminase OS=Paracoccus denitrific... [more]
HEM3_NITWN4.337e-5057.51Porphobilinogen deaminase OS=Nitrobacter winograds... [more]
HEM3_NITHX2.811e-4958.55Porphobilinogen deaminase OS=Nitrobacter hamburgen... [more]
HEM3_RHILO1.105e-4552.26Porphobilinogen deaminase OS=Rhizobium loti GN=hem... [more]
HEM3_PELCD1.885e-4551.79Porphobilinogen deaminase OS=Pelobacter carbinolic... [more]
HEM3_AGRT52.085e-4452.02Porphobilinogen deaminase OS=Agrobacterium tumefac... [more]
HEM3_ACIF52.085e-4448.72Porphobilinogen deaminase OS=Acidithiobacillus fer... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100DA01RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262715 ID=DY262715; Name=DY262715; organism=Citrus clementina; type=EST; length=1220bp
AAAACATTACCAATCTCCGCTTCTAACTCGCTTTCTTCTTTTCTTCTTTC
ATAAATAATTAGCACACTGTCTGTCCCCGTCTCTGTTTCTGATACTGGGC
AGTCATCATTGTTGTTGTGTGTCAATGGAGAGTTTGAGTTTAGCAGCTTC
TTCTCTTTGTACAAGCCGGGGTGGCCCCATGGAGCGCCATTGCTATCCAG
GGTCGGTCTCCCTTGTTGGGTTCTCTTCGCCACGCCTCAAGACTCCGTCT
TTTCCAAAGAGTTTGAAGAAACGCAGTTTTGGGCTTGTAAGAGCCTCTGC
TGCTGTTGAAACCAAGGTTGCAATCATCAGAATTGGCACCAGAGGAAGCC
CTCTGGCACTTGCTCAGGCTCATGAGACGCGAAACAAACTCATGGCTTTG
CATCCAGAGCTAGCTCAAGAGGGGGCGATTCAAATTGTAATAATAAAGAC
AACTGGTGATAAGATACTAAGTCAACCACTTGCAGACATTGGTGGGAAGG
GCTTGTTCACCAAAGAAATAGACGAGGCGCTGATAAATAGTCAAATTGAC
ATCGCCGTGCACTCGATGAAAGATGTTCCAACATATTTACCAGAGAAGAC
CATTCTACCTTGCAACCTTCAGCGGGAGGATGTCCGAGATGCATTTATTT
CGTTGAGTGCAGCCTCTTTAGCAGAACTACCAGCAGGAAGCATTGTTGGT
ACTGCTTCACTTAGAAGAAAGTCTCAAATACTCCATAGATATCCATCATT
GAAAGTGATGGAAAATTTCAGAGGTAACGTCCAGACAAGGTTGAGAAAAC
TTAATGAGAGGGTGGTCCAAGCGACATTGTTAGCACTAGCTGGACTTAAA
CGCTTAAGCATGACAGAAAATGTGACTAACATTCTTTCAGTTGATGACAT
GCTTCCAGCCCGTTGCTCAGGGGGCTATTGGGAATTGCTTTGCGAAGCCA
TGACAAAAAAATGGGCTAATTATTTAGAATCATTGAATCATGGAGAAAAA
AAAAATTTGCTGTTGCTTGTGAAAAAACCTTTCCTTGGAACCTTTGGAAG
GGATTTTGCCCCAAATTCCTATTTGCCGGGAAACCCTTTGGGAAAAAAAA
AAAAAGGGGGAACGGGGTTTATTTTTAAAGAAAATGGGGGGGCTTTCCCC
CAAAGGGGGAAACCTCTTTGTTTTTTTTAAAAAAACTCCAAAAAAAAGGG
TCCCCCATAAATCCCTTTTT
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