DY262715
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY262715 vs. ExPASy Swiss-Prot
Match: HEM3_ARATH (Porphobilinogen deaminase, chloroplastic OS=Arabidopsis thaliana GN=HEMC PE=1 SV=1) HSP 1 Score: 351.288 bits (900), Expect = 6.828e-96 Identity = 195/287 (67.94%), Postives = 218/287 (75.96%), Query Frame = 2 Query: 191 CYPGSVSLVGFSSPRLKTPSFPKSLKKRSF-GLVRASAAVE--TKVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPARCSGGYWELLCEAMTKKWANYLESLNHGEKKNLLLLVKKPFLGT 1042 C GSVS +GFS P++ +P+ K +K+S G V+A AVE T+ AIIRIGTRGSPLALAQA+ETR KL HPEL ++GAI I IIKTTGDKILSQPLADIGGKGLFTKEIDEALIN IDIAVHSMKDVPTYLPEKTILPCNL REDVRDAFI PAGS+VGTASLRRKSQILH+YP+L V ENFRGNVQTRL KL VQATLLALAGLKRLSMTENV +ILS+D+MLPA G + C K A YL SLNH E+ L + ++ FL T Sbjct: 27 CSLGSVSAIGFSLPQISSPALGKCRRKQSSSGFVKACVAVEQKTRTAIIRIGTRGSPLALAQAYETREKLKKKHPELVEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVPTYLPEKTILPCNLPREDVRDAFICLTAATLAELPAGSVVGTASLRRKSQILHKYPALHVEENFRGNVQTRLSKLQGGKVQATLLALAGLKRLSMTENVASILSLDEMLPAVAQGAI-GIACRTDDDKMATYLASLNH-EETRLAISCERAFLET 311
BLAST of DY262715 vs. ExPASy Swiss-Prot
Match: HEM3_PEA (Porphobilinogen deaminase, chloroplastic OS=Pisum sativum GN=HEMC PE=1 SV=1) HSP 1 Score: 346.28 bits (887), Expect = 2.196e-94 Identity = 188/257 (73.15%), Postives = 207/257 (80.54%), Query Frame = 2 Query: 287 VRASAAVE-----TKVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPARCSGGYWELLCEAMTKKWANYLESLNHGEKKNLLLLVKKPFLGT 1042 +RAS AVE K A+IRIGTRGSPLALAQAHETR+KLMA H ELA+EGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALIN IDIAVHSMKDVPTYLPE+TILPCNL REDVRDAFI PAGS++GTASLRRKSQILHRYPSL V +NFRGNVQTRLRKL+E VV+ATLLALAGLKRL+MTENVT+ LS+DDMLPA G + C + K A YL SLNH E+ L + ++ FL T Sbjct: 44 IRASLAVEQQTQQNKTALIRIGTRGSPLALAQAHETRDKLMASHTELAEEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGDIDIAVHSMKDVPTYLPEETILPCNLPREDVRDAFISLSAASLADLPAGSVIGTASLRRKSQILHRYPSLTVQDNFRGNVQTRLRKLSEGVVKATLLALAGLKRLNMTENVTSTLSIDDMLPAVAQGAI-GIACRSNDDKMAEYLASLNH-EETRLAISCERAFLTT 298
BLAST of DY262715 vs. ExPASy Swiss-Prot
Match: HEM3_ORYSJ (Porphobilinogen deaminase, chloroplastic OS=Oryza sativa subsp. japonica GN=HEMC PE=2 SV=1) HSP 1 Score: 310.842 bits (795), Expect = 1.023e-83 Identity = 170/254 (66.93%), Postives = 197/254 (77.56%), Query Frame = 2 Query: 287 VRASAAVET----KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPARCSGGYWELLCEAMTKKWANYLESLNHGEKKNLLLLVKKPFL 1036 VRA+ AV+ KV++IRIGTRGSPLALAQAHETR+KL A H ELA+EGA++IVIIKTTGD IL +PLADIGGKGLFTKEID+AL+ +IDIAVHSMKDVPTYLPE TILPCNL REDVRDAFI PAGS+VG+ASLRR+SQIL++YPSLKV+ NFRGNVQTRLRKL E V ATLLALAGLKRL+M E T++LSVD+MLPA G + C + NYL SLNH E L + ++ FL Sbjct: 33 VRAAVAVQAEAQAKVSLIRIGTRGSPLALAQAHETRDKLKAAHSELAEEGAVEIVIIKTTGDMILDKPLADIGGKGLFTKEIDDALLQGRIDIAVHSMKDVPTYLPEGTILPCNLPREDVRDAFICLTASSLAELPAGSVVGSASLRRQSQILYKYPSLKVV-NFRGNVQTRLRKLKEGDVHATLLALAGLKRLNMAETATSVLSVDEMLPAVAQGAI-GIACRSSDDTMMNYLSSLNH-EDTRLAVACEREFL 283
BLAST of DY262715 vs. ExPASy Swiss-Prot
Match: HEM3_PARDP (Porphobilinogen deaminase OS=Paracoccus denitrificans (strain Pd 1222) GN=hemC PE=3 SV=1) HSP 1 Score: 213.386 bits (542), Expect = 2.222e-54 Identity = 113/199 (56.78%), Postives = 144/199 (72.36%), Query Frame = 2 Query: 326 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPARCSG 922 IRIGTRGS LALAQAHETR++LMA H A A +IV+IKTTGD++L +PL +IGGKGLFT+EI++AL+ +IDIAVHSMKD+PT PE ++ C L REDVRDAF+ P G++VG++SLRR++Q+ R P LK++E FRGNVQTRL+KL + V AT LA+AGL RL M + D+MLPA G Sbjct: 11 IRIGTRGSALALAQAHETRDRLMAAHGLAAD--AFRIVVIKTTGDRVLDRPLKEIGGKGLFTREIEDALLAHEIDIAVHSMKDMPTIQPEGLVIDCYLPREDVRDAFVSAQFAAISELPQGAVVGSSSLRRRAQLAARRPDLKLVE-FRGNVQTRLKKLEDGVAVATFLAMAGLTRLGMLHVARGAVEPDEMLPAVAQG 206
BLAST of DY262715 vs. ExPASy Swiss-Prot
Match: HEM3_NITWN (Porphobilinogen deaminase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=hemC PE=3 SV=1) HSP 1 Score: 199.134 bits (505), Expect = 4.337e-50 Identity = 111/193 (57.51%), Postives = 134/193 (69.43%), Query Frame = 2 Query: 332 IGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPA 910 IGTRGSPLALAQAHE R++L H ++A E I I I+T+GD I +PL D+GGKGLFTKEI+EAL+ ID AVHS KDVPT+LP+ T LP L REDVRD FI PAG+ VGTASLRR++ +L P LKV + RGNV+TRLRK++ ATLLALAGL RL + + T IL D+ LPA Sbjct: 13 IGTRGSPLALAQAHEVRDRLARAH-QVAPE-RIAIKTIRTSGDAIQDRPLFDVGGKGLFTKEIEEALLAGTIDFAVHSSKDVPTFLPDATWLPAFLPREDVRDVFISPHAGSLNDLPAGATVGTASLRRQAMVLKLRPDLKV-NSLRGNVETRLRKISVGEADATLLALAGLNRLGLQDKATRILETDEFLPA 202
BLAST of DY262715 vs. ExPASy Swiss-Prot
Match: HEM3_NITHX (Porphobilinogen deaminase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=hemC PE=3 SV=1) HSP 1 Score: 196.438 bits (498), Expect = 2.811e-49 Identity = 113/193 (58.55%), Postives = 133/193 (68.91%), Query Frame = 2 Query: 332 IGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPA 910 IGTRGS LALAQA+E R++L H ++A E I I I+T+GD I +PL D+GGKGLFTKEI+EAL+ ID AVHS KDVPT+LP+ T LP L REDVRDAFI PAGSIVGTASLRR++ +L P LKV RGNV+TRLRKL ATLLALAGL RL + + T IL D+ LPA Sbjct: 13 IGTRGSALALAQANEVRDRLARAH-QVAPE-RIVIKTIRTSGDAIQDRPLFDVGGKGLFTKEIEEALLAGSIDFAVHSSKDVPTFLPDATWLPAFLPREDVRDAFISPRAASLNDLPAGSIVGTASLRRQAMVLRLRPDLKV-SVIRGNVETRLRKLVAGEADATLLALAGLNRLGLQDRATRILETDEFLPA 202
BLAST of DY262715 vs. ExPASy Swiss-Prot
Match: HEM3_RHILO (Porphobilinogen deaminase OS=Rhizobium loti GN=hemC PE=3 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 1.105e-45 Identity = 104/199 (52.26%), Postives = 135/199 (67.84%), Query Frame = 2 Query: 326 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPARCSG 922 ++IGTRGSPLALAQAHET+ +LMA H A+ A ++V+I T+GD+I +PL++ GGKGLFTKEI+EAL+ IDIAVHS KD+PT LP+ L L RED RDAF+ G+ VG++SLRR++ I P L V+ FRGNVQTRLRKL+E V T+LA AGLKRL + T+++ +D PA G Sbjct: 5 LKIGTRGSPLALAQAHETQARLMAAHGLPAE--AFEVVVISTSGDRIQDRPLSEAGGKGLFTKEIEEALLAGAIDIAVHSSKDMPTQLPDGLELSAFLPREDARDAFVGKAAKTIADLLRGAKVGSSSLRRQALIRRMRPDLDVV-MFRGNVQTRLRKLDEGVAAGTILAYAGLKRLGLEHVATDLMPLDIFPPAPGQG 200
BLAST of DY262715 vs. ExPASy Swiss-Prot
Match: HEM3_PELCD (Porphobilinogen deaminase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=hemC PE=3 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 1.885e-45 Identity = 101/195 (51.79%), Postives = 129/195 (66.15%), Query Frame = 2 Query: 326 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPA 910 +RIGTR S LAL QA + +L LHP L+ + +V I T GDKIL PLA +GGKGLF KEI+EAL + ID+AVHSMKDVP+ LP ILPC RED RDA + P G+ +GT++LRR++Q+LHR P L ++ + RGNV+TRLRK+ E + +LA AGLKRL + E + LSVD LPA Sbjct: 6 LRIGTRASRLALWQAEWVQQQLETLHPGLS----VVLVPITTKGDKILDVPLAKVGGKGLFVKEIEEALYDGSIDLAVHSMKDVPSVLPPGLILPCIPPREDPRDALVTPDGRSFAQLPQGARIGTSALRRQAQLLHRRPDLDIV-SLRGNVETRLRKMEEEDMDGIVLAAAGLKRLELAERIAEYLSVDVSLPA 195
BLAST of DY262715 vs. ExPASy Swiss-Prot
Match: HEM3_AGRT5 (Porphobilinogen deaminase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=hemC PE=3 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 2.085e-44 Identity = 103/198 (52.02%), Postives = 129/198 (65.15%), Query Frame = 2 Query: 329 RIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPARCSG 922 RIGTRGSPLALAQA+ETR++LMA H E +IV++ T GD+I + L++IGGKGLFT+E++ L++ ++DIAVHS KD+PT LPE L L RED+RDAFI P G++VG+ASLRR++ I P L V+ FRG V TRLRKL E ATLLA AGLKRL T IL + PA G Sbjct: 7 RIGTRGSPLALAQAYETRSRLMAAHG--LPEEMFEIVVLSTKGDRITDRALSEIGGKGLFTEELENQLLSGELDIAVHSSKDMPTVLPEGLHLSAFLPREDMRDAFIGRTAPKLLELPQGAVVGSASLRRQALIRRLRPDLNVIV-FRGLVDTRLRKLEEGQADATLLAFAGLKRLGKDNVPTEILDPKEFPPAPAQG 201
BLAST of DY262715 vs. ExPASy Swiss-Prot
Match: HEM3_ACIF5 (Porphobilinogen deaminase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=hemC PE=3 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 2.085e-44 Identity = 95/195 (48.72%), Postives = 132/195 (67.69%), Query Frame = 2 Query: 326 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPA 910 +RIGTR SPLA+ QA R L+ LHP +A ++I+ + T+GD +L PL +GGKGLF KEI++AL ++D+AVHSMKDVP P+ + + REDVRDAF+ P G+ VG++SLRR++Q+L RYP L+V E+ RGNV TRLR+L+E A +LA AGLKRL + + +T++L +D LPA Sbjct: 5 LRIGTRASPLAVWQAEHVRAALLRLHPGMA----VEIITMTTSGDVLLDAPLHALGGKGLFVKEIEDALQQRRVDVAVHSMKDVPALQPDGLEIVAIMAREDVRDAFVSNTFLHPDALPEGARVGSSSLRRRAQLLERYPHLRV-EDLRGNVATRLRRLDEGHYDAIILAAAGLKRLGLPDRITHLLDIDRSLPA 194 The following BLAST results are available for this feature:
BLAST of DY262715 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 475
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Sequences
The
following sequences are available for this feature:
EST sequence >DY262715 ID=DY262715; Name=DY262715; organism=Citrus clementina; type=EST; length=1220bpback to top |