DY262726

Overview
NameDY262726
Unique NameDY262726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1193
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY262726 vs. ExPASy Swiss-Prot
Match: FRIGI_ARATH (Protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=1 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 1.066e-61
Identity = 136/342 (39.77%), Postives = 205/342 (59.94%), Query Frame = 1 
Query:   25 ISMAQLNESELMKSVNELSGLASKILEFNKRYEELQKHVDFIGEALDT--------MDTKFNNGNAESLELTAPSVVPETTTRHNQTPRILTEEVTASKAPTETVENDSKKSSQRRSELHSLCETMYSRGLRKYVVSNLSEIQSVRRDEAISALKSAPKPAKLVLDCVGRFFLQGIRAYTKNSPMITSRQASVLMLELFLIVXXXXXXXXXXXXXXXXXAENNAIAWKKRLISEGGVCKACEIDARGLLLFIACFGIPKGFKNDDIRDLIRFSNVKEIGHLLKGSRVLVQKIPEIVENMKKHGMHVEAVDIVYTFGIEE*FSPLKFLISFLRESKDGWKKKK 1026
            I++ Q  + + +KS++EL+  +  +  F +++++LQKH++ I  A+D+        +  + NN +   L     +V  ETT             VT S+   E V   S K    R     +CE M S+GLRKY+ +N+S+ Q+   +E  SALK A +PAK VLDC+G+F+LQG RA+TK SPM ++RQ S+L+LE FL++                 AE  A+AW+KRL++EGG+  A ++DARGLLL +ACFG+P  F++ D+ DLIR S   EI   LK S+ LV  +  IVE+  K GMH+EA+++VYTFG+E+ FS    L SFL+ SK+ +++ K
Sbjct:   45 ITIGQSKQPQFLKSIDELAAFSVAVETFKRQFDDLQKHIESIENAIDSKLESNGVVLAARNNNFHQPMLSPPRNNVSVETT-------------VTVSQPSQEIVPETSNKPEGGR-----MCELMCSKGLRKYIYANISD-QAKLMEEIPSALKLAKEPAKFVLDCIGKFYLQGRRAFTKESPMSSARQVSLLILESFLLMPDRGKGKVKIESWIKDEAETAAVAWRKRLMTEGGLAAAEKMDARGLLLLVACFGVPSNFRSTDLLDLIRMSGSNEIAGALKRSQFLVPMVSGIVESSIKRGMHIEALEMVYTFGMEDKFSAALVLTSFLKMSKESFERAK 367
The following BLAST results are available for this feature:
BLAST of DY262726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FRIGI_ARATH1.066e-6139.77Protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA100DB02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262726 ID=DY262726; Name=DY262726; organism=Citrus clementina; type=EST; length=1193bp
TTTGCCTGGAAAATTGCAGGGGGTATATCCATGGCTCAGCTGAATGAGTC
TGAGTTGATGAAATCCGTCAACGAACTCAGTGGCCTCGCCTCTAAAATTC
TCGAATTCAATAAAAGATACGAAGAATTGCAAAAGCATGTCGATTTTATT
GGGGAAGCTTTGGACACCATGGACACCAAATTCAATAATGGAAACGCGGA
ATCATTAGAATTAACGGCGCCGTCAGTTGTTCCTGAGACGACAACGCGCC
ACAACCAGACTCCTCGGATTCTAACGGAAGAAGTTACGGCGTCGAAAGCA
CCAACGGAAACCGTAGAGAACGACAGTAAAAAGTCCTCGCAGCGGCGGTC
GGAGCTCCATTCTCTCTGCGAGACGATGTACAGCCGCGGATTAAGGAAGT
ACGTGGTCTCGAACTTATCGGAGATCCAGAGCGTCCGTCGAGACGAAGCG
ATTTCGGCGCTCAAATCCGCGCCGAAGCCGGCGAAGCTGGTGCTAGATTG
CGTCGGGAGGTTCTTCCTCCAAGGAATCCGAGCGTACACGAAGAATTCTC
CTATGATCACGTCGCGGCAAGCTTCGGTTCTGATGTTGGAGCTTTTCCTT
ATCGTGATCGGAGAGAGCGAAAAGGAGATTGAGATTGAGAAGCCGGTGAA
ACAAGAGGCCGAGAATAATGCGATTGCATGGAAAAAGAGGCTGATTAGTG
AAGGCGGTGTGTGTAAAGCTTGTGAGATTGACGCCAGAGGCTTGCTTCTG
TTTATTGCTTGTTTTGGGATTCCTAAAGGTTTTAAGAATGATGATATCAG
GGATTTGATTAGGTTTAGCAATGTGAAGGAGATTGGGCATTTGCTTAAAG
GATCCCGTGTTCTTGTCCAGAAGATTCCAGAAATAGTAGAGAATATGAAA
AAGCATGGAATGCATGTTGAAGCTGTAGATATTGTGTATACCTTTGGGAT
TGAGGAATAGTTCTCTCCTCTAAAATTTTTGATTTCATTCTTACGTGAGT
CTAAAGATGGCTGGAAAAAGAAAAAGCCGGAATGCCCCTGGTTTGTTGAA
AAAAAAAACCAAATGAAAAGCATTTATCCTGGCTCTGCAATCCGGTTATC
AAGGGTTTGGAAAAAAAAAAAAATTTGATTCCGGCCCAAGCCGGCTTCCT
GGGGAGGGGGAAATCCAGGGGAAAAAGAAAAAACAAATGTTGG
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