DY262733

Overview
NameDY262733
Unique NameDY262733
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1220
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262733_ssr520 microsatellite DY262733_ssr520:520..531. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY262733 vs. ExPASy Swiss-Prot
Match: VRN1_ARATH (B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana GN=VRN1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.189e-23
Identity = 49/110 (44.55%), Postives = 72/110 (65.45%), Query Frame = 1
Query:  655 PHFIDVILDSTIEDKKMKIPQNFVGRFGDELSNVATLTNPEGYVMRVGITREDGNIWFDGGWNEFVEDHSIDVGYFVLFQYRKNSKFRVFIYNITTCEIQYPSRNTFPSS 984
            P F  +I  STI++K++++P  FV +F DELS    LT P+G+V RVG+ + D  IWF  GW EFV+ +SI +GY ++F+Y  NS F V+I+N++  EI Y S     S+
Sbjct:    4 PFFHKLIFSSTIQEKRLRVPDKFVSKFKDELSVAVALTVPDGHVWRVGLRKADNKIWFQDGWQEFVDRYSIRIGYLLIFRYEGNSAFSVYIFNLSHSEINYHSTGLMDSA 113          
BLAST of DY262733 vs. ExPASy Swiss-Prot
Match: Y3896_ARATH (B3 domain-containing protein At3g18960 OS=Arabidopsis thaliana GN=At3g18960 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.553e-23
Identity = 53/117 (45.30%), Postives = 75/117 (64.10%), Query Frame = 1
Query:  610 RRAEHKMPSSMKKTYPHFIDVILDSTIEDKKMKIPQNFVGRFGDELSNVATLTNPEGYVMRVGITREDGNIWFDGGWNEFVEDHSIDVGYFVLFQYRKNSKFRVFIYNITTCEIQYP 960
            RR++    S +KK    F  ++L ST++DK MKIP  FV   G +LS V TL  P G+   + + R    IWF  GW+EF E HSI+ G+F+LF+Y++NS FRV I+N++ CE +YP
Sbjct:   17 RRSQQDPESPVKK----FFKLVLPSTMKDKMMKIPPRFVKLQGSKLSEVVTLETPAGFKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKENSSFRVIIFNVSACETKYP 129          
BLAST of DY262733 vs. ExPASy Swiss-Prot
Match: Y4158_ARATH (B3 domain-containing protein At4g01580 OS=Arabidopsis thaliana GN=At4g01580 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.460e-23
Identity = 53/117 (45.30%), Postives = 73/117 (62.39%), Query Frame = 1
Query:  610 RRAEHKMPSSMKKTYPHFIDVILDSTIEDKKMKIPQNFVGRFGDELSNVATLTNPEGYVMRVGITREDGNIWFDGGWNEFVEDHSIDVGYFVLFQYRKNSKFRVFIYNITTCEIQYP 960
            R+++    S +KK    F  ++L ST++DK M+IP  FV   G +LS V TL  P GY   + + R    IWF  GW+EF E HSI+ G+F+LF+Y+KNS FRV I+N + CE  YP
Sbjct:   17 RQSQQDPESPVKK----FFKLVLPSTMKDKMMRIPPRFVKLQGSKLSEVVTLVTPAGYKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKKNSSFRVIIFNASACETNYP 129          
BLAST of DY262733 vs. ExPASy Swiss-Prot
Match: Y1475_ARATH (B3 domain-containing protein At1g49475 OS=Arabidopsis thaliana GN=At1g49475 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.504e-18
Identity = 50/124 (40.32%), Postives = 76/124 (61.29%), Query Frame = 1
Query:  601 AFRRRAEHKMPSSMKKTYPHFIDVILDSTIEDKKMKIPQNFVGRFGDELSNVATLTNPEGYVMRVGITREDGNIWFDGGWNEFVEDHSIDVGYFVLFQYRKNSKFRVFIYNITTCEIQYPSRNT 972
            A +RR + +   ++KK    FI +IL S I +K MK+P  FV RFG +L++  TL  P G+   + I R    +WF+ GW+EF E HS+  G+F+ F Y  +S FRV I++++  EI+YP  +T
Sbjct:   18 ATQRRLKPEPEPTVKK----FIKIILLSRIIEKMMKVPARFV-RFGPKLTDNVTLQTPVGFKRSIRIKRIGDEVWFEKGWSEFAEAHSLSDGHFLFFHYEGDSCFRVVIFDVSASEIEYPLDDT 136          
The following BLAST results are available for this feature:
BLAST of DY262733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
VRN1_ARATH1.189e-2344.55B3 domain-containing transcription factor VRN1 OS=... [more]
Y3896_ARATH1.553e-2345.30B3 domain-containing protein At3g18960 OS=Arabidop... [more]
Y4158_ARATH3.460e-2345.30B3 domain-containing protein At4g01580 OS=Arabidop... [more]
Y1475_ARATH1.504e-1840.32B3 domain-containing protein At1g49475 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA100DB09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262733 ID=DY262733; Name=DY262733; organism=Citrus clementina; type=EST; length=1220bp
GTCGCTGGCTCGCTGCTCGTCGTGACTTCTTCGGTTCCCGCTGGCCGCTG
CTCGTCGTGACCTTCAGCCAAAAGCAAAAATCGAACTCGTGAGTCGTGAC
CATCAGGCTTCAGCCACAGGCTCGAGTCGTGACCTTCAGCCACACTTCTG
TCTTCTTCTGTCCCCTCTGCTCGTCGCCGCCGCTGCAAGCTTGTCACCAC
CGCTGCAAGCTCGTCACCACCGCTGCAAGCTCGTCACCGCCGCTGCAAGC
TCGAACTGGAACTGAACTCAAAATAATCGTCCAAACCAAAACGATCTAGT
TATTCGCGACCGTTAGATTTGCTTCTTTACGGTCAGATTCAAATCCGTTA
GTGAAGTGAATCCAACTGCAGCCACTCTACGTTGATGTCGCGAAACAACC
AATCGAGTCGTGCAGCCATGAGATGAGAAGAGGAATCATCTTGGAGCATT
ATTGGAAGAGATTTTGTGAATATTGTGTTGCTGTTGTTGAGCTTGACTGC
TTGAGTGTCAATCAGTGCATCTTTCTTTCTTGCACAAATTGAGGAGAGAA
CAATAAAAAGTAAAAGTGCTAGATTCCACAAAACCTGAAGGAAACAACTG
GCTTTCAGAAGGAGAGCAGAGCACAAGATGCCTAGTTCCATGAAGAAGAC
ATATCCACATTTCATCGATGTCATTCTTGACTCCACCATCGAAGATAAAA
AGATGAAGATTCCACAAAATTTTGTGGGAAGATTTGGGGATGAACTCTCA
AATGTCGCTACACTCACAAATCCTGAGGGCTATGTTATGCGAGTAGGTAT
TACAAGAGAGGATGGAAACATTTGGTTTGATGGTGGTTGGAATGAATTTG
TGGAAGATCATTCAATAGATGTTGGGTACTTTGTACTTTTTCAGTACAGA
AAGAACTCAAAGTTCCGAGTTTTCATTTATAATATCACTACTTGTGAGAT
TCAGTATCCATCCAGAAACACGTTTCCCTCCTCCAAAGCAGAACCAAGCT
ACTTTTGACGGTTCAAAATCTAAGAAATGGTTGTGAGATGGCGAGGCAGA
ACCTACAGAAATGGAAAAAAATGAAGGGGAAAGAAAAAATCGAAAAAGGG
GAATGAATCCATGCCAAAAAGTAATTGGGAACTTGCCAATTTCGAAAGGG
ATTTGTTTCCCCCCAAAAAAAAACCCCCCTGGAAAACAAAAAGGGTTTCT
TCGGTTTTCGAAAAAAAGGA
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