DY262739

Overview
NameDY262739
Unique NameDY262739
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1037
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262739 vs. ExPASy Swiss-Prot
Match: SYP71_ARATH (Syntaxin-71 OS=Arabidopsis thaliana GN=SYP71 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 5.731e-21
Identity = 62/136 (45.59%), Postives = 83/136 (61.03%), Query Frame = 2
Query:   11 EMAKF*RLAFMQEWGLSN*DLEALRDLIAALPDRIDRRPDVSTVCL*TNCDGGTTSAS*NRIKFHTYSCGKDDDEYFPDTEKSSGFGLEYEMLRMTPDQGLDVIGEGLDLLTNMAHDVIDEFDRQVPKMDEIDEKV 418
            E+ K  RLA  +  GL+  +L A  DL+ ALP RI+  PD  T     +    T S++ +R      S G+ DD+YF ++ +SS F  EYEM ++  +QGLD+I EGLD L NMA D+ +E DRQVP MDEID KV
Sbjct:   83 EVPKLQRLAVKRVKGLTTEELAARNDLVLALPARIEAIPD-GTAGGPKSTSAWTPSSTTSRPDIKFDSDGRFDDDYFQESNESSQFRQEYEMRKIKQEQGLDMISEGLDALKNMASDMNEELDRQVPLMDEIDTKV 217          
BLAST of DY262739 vs. ExPASy Swiss-Prot
Match: SYP72_ARATH (Syntaxin-72 OS=Arabidopsis thaliana GN=SYP72 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.943e-17
Identity = 58/140 (41.43%), Postives = 80/140 (57.14%), Query Frame = 2
Query:    2 LLGEMAKF*RLAFMQEWGLSN*DLEALRDLIAALPDRIDRRPDVSTV-CL*TNCDGGTTSAS*NRIKFHTYSCGKDDDEYFPDTEKSSGFGLEYEMLRMTPDQGLDVIGEGLDLLTNMAHDVIDEFDRQVPKMDEIDEKV 418
            L  ++ K  +LA  +  GL+  + E+  DL+ AL DR+   PD +       N D G  SA    IKF   S    DD +F  +E+SS F  EYEM R   D+GLD+I EGLD L N+A D+ +E D+QVP M+E++ KV
Sbjct:   80 LAEDVVKLQKLAVKKIKGLTREERESRCDLVIALADRLQAIPDGNEHGAKQANSDWGGASAPNKNIKFDM-SEEDMDDGFFQQSEESSQFRQEYEMRRKKQDEGLDIISEGLDALKNLARDMNEELDKQVPLMEEMETKV 218          
BLAST of DY262739 vs. ExPASy Swiss-Prot
Match: SYP73_ARATH (Syntaxin-73 OS=Arabidopsis thaliana GN=SYP73 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 9.469e-16
Identity = 58/140 (41.43%), Postives = 78/140 (55.71%), Query Frame = 2
Query:    2 LLGEMAKF*RLAFMQEWGLSN*DLEALRDLIAALPDRIDRRPDVSTVCL*TNCDGGTTSAS*NRIKFHT-YSCGKDDDEYFPDTEKSSGFGLEYEMLRMTPDQGLDVIGEGLDLLTNMAHDVIDEFDRQVPKMDEIDEKV 418
            LL  + K  RL+  +  GLS  +L+A  DL+ +L D+I+  P+ S   +     G   S S + I+F T  S  +   EYF  T +S  F  EYEM R+   + LD I EGLD L NMA D+ +E DRQ P MDEID K+
Sbjct:   80 LLEGIPKLQRLSLKKVKGLSKEELDARNDLVLSLRDKIEAIPESSAPVV----GGWEASTSYSNIRFDTNVSDDRIGSEYFQPTGESDQFKQEYEMKRIKQAR-LDYIAEGLDTLKNMAQDINEELDRQEPLMDEIDTKI 214          
The following BLAST results are available for this feature:
BLAST of DY262739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SYP71_ARATH5.731e-2145.59Syntaxin-71 OS=Arabidopsis thaliana GN=SYP71 PE=1 ... [more]
SYP72_ARATH2.943e-1741.43Syntaxin-72 OS=Arabidopsis thaliana GN=SYP72 PE=2 ... [more]
SYP73_ARATH9.469e-1641.43Syntaxin-73 OS=Arabidopsis thaliana GN=SYP73 PE=2 ... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA100DC06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262739 ID=DY262739; Name=DY262739; organism=Citrus clementina; type=EST; length=1037bp
GTTGCTTGGAGAAATGGCTAAATTCTAAAGACTTGCTTTTATGCAGGAAT
GGGGGCTTTCAAACTAGGATCTTGAGGCTCTAAGAGACTTGATTGCTGCC
CTCCCAGATAGAATTGATCGGAGACCTGATGTTTCAACAGTCTGCCTCTA
AACAAACTGTGATGGTGGGACAACTTCGGCCTCATAAAACCGAATCAAAT
TTCACACTTATTCTTGTGGGAAAGATGATGATGAATATTTCCCAGACACC
GAAAAGTCTAGTGGGTTTGGGCTGGAGTATGAAATGCTGAGAATGACACC
CGACCAAGGTTTAGATGTTATAGGGGAAGGTTTGGATCTGTTGACGAACA
TGGCTCATGACGTGATTGACGAATTTGACAGGCAAGTGCCCAAGATGGAT
GAAATTGATGAAAAGGTAATCCTTTATTCCTTTGTTGGCATCTCCCAATG
TGTGGTGGGAGCATAGCATTTATTAGGAGTATGAAAACAGATCTCTCTTG
GATGGTCCTCTTTTCAAGATTCTGGTACCTATGTCTTGATGCAAACTTAT
TGTTTTCCACTGCTTGGTGATTTTGAAGAGAATCTTCCCTTGTCTTTGTT
TCCCTTTTAATGAAGGACTAATTTTCATAATTGCATATAACCCAAATTGA
AAAGTCATTGATGGTCCACTAATTACAAAAAATAAAAAATCCCTTGCCAA
AGTGGGGTGTCCTCTAGGAATATTTTTTGGTATTGGTGAAAAACCCTTAA
AAAAAAAATTAATAAAAAAATAAACTTTTAAATTCAACATTCCTTTTCTT
TTTTCTCTTTTGAAGGGATTTATCCCTCCTGAAAAAAATATTTTTTTTTT
AAATTTTTTTTTTGGGTGTCCGGGGGAACCCTTTTCTTTTTTAAGATTTC
CCACCGTAGAAACCCCCCCGAAATCCTCTACCCCCCCCCTTTTAATTCCC
GTTCAAAAAAATCTCCCCCTTGTAAAAACACCCCCCCCCCTTGGTCTCAA
AACACCCCAAAGAATTTTTGTCTCGCTCCTTATTATT
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