DY262769

Overview
NameDY262769
Unique NameDY262769
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1168
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262769_ssr23 microsatellite DY262769_ssr23:23..32. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY262769 vs. ExPASy Swiss-Prot
Match: RHM1_ARATH (Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=2 SV=1)

HSP 1 Score: 476.478 bits (1225), Expect = 1.319e-133
Identity = 235/305 (77.05%), Postives = 263/305 (86.23%), Query Frame = 3
Query:  117 THHYPMGFPANGSDAGSKP-LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEIYRQYIDPNFPLKNFTLEDQAKVIVAPKSNNELDASKLKTEFPELLSI*ETLLQ*FF*PNKKT 1028
            TH       +NG+    KP LKFLIYG+TGWIGGLLGK+C  Q I + YG GRLE+R+SL  DI +VKPTHVFN+AGVTGRPNVDWCESHK ETIR NV GTLTLADVCR+ GL+++N+ATGCIFEYD  HP GSGIGFKEEDTPNF GSFYSKTKAMVEELLK ++NVCTLRVRMPISSDL+NPRNFITKI+RY KVVNIPNSMT+LDELLPISIEMAKRNL GIWNFTNPGVVSHNEILE+YR YI+P F   NFTLE+QAKVIVAP+SNNE+DASKLK EFPELLSI E+L++  + PNKKT
Sbjct:  367 THMVVPSQRSNGTP--QKPSLKFLIYGKTGWIGGLLGKICDKQGIAYEYGKGRLEDRSSLLQDIQSVKPTHVFNSAGVTGRPNVDWCESHKTETIRANVAGTLTLADVCREHGLLMMNFATGCIFEYDDKHPEGSGIGFKEEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLKGIWNFTNPGVVSHNEILEMYRDYINPEFKWANFTLEEQAKVIVAPRSNNEMDASKLKKEFPELLSIKESLIKYAYGPNKKT 669          
BLAST of DY262769 vs. ExPASy Swiss-Prot
Match: RHM2_ARATH (Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1)

HSP 1 Score: 474.552 bits (1220), Expect = 5.012e-133
Identity = 231/323 (71.52%), Postives = 268/323 (82.97%), Query Frame = 3
Query:   60 LTDPNSNRNPIQSHLSFAFTHHYPMGFPANGSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEIYRQYIDPNFPLKNFTLEDQAKVIVAPKSNNELDASKLKTEFPELLSI*ETLLQ*FF*PNKKT 1028
            L+D +S +  + S+    FT    +  P NG       LKFLIYG+TGW+GGLLGKLC+ Q I + YG GRLE+RASL ADI ++KPTHVFNAAG+TGRPNVDWCESHK ETIR NV GTLTLADVCR+  L+++N+ATGCIFEYD+ HP GSGIGFKEED PNF GSFYSKTKAMVEELL+ F+NVCTLRVRMPISSDL+NPRNFITKI+RY KVV+IPNSMT+LDELLPISIEMAKRNL GIWNFTNPGVVSHNEILE+Y+ YI+P F   NFT+E+QAKVIVA +SNNE+D SKL  EFPE+LSI E+LL+  F PNK+T
Sbjct:  349 LSDGSSEKKDVSSNTVQTFT----VVTPKNGDSGDKASLKFLIYGKTGWLGGLLGKLCEKQGITYEYGKGRLEDRASLVADIRSIKPTHVFNAAGLTGRPNVDWCESHKPETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYDATHPEGSGIGFKEEDKPNFFGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVDIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKNYIEPGFKWSNFTVEEQAKVIVAARSNNEMDGSKLSKEFPEMLSIKESLLKYVFEPNKRT 667          
BLAST of DY262769 vs. ExPASy Swiss-Prot
Match: RHM3_ARATH (Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana GN=RHM3 PE=2 SV=1)

HSP 1 Score: 469.159 bits (1206), Expect = 2.106e-131
Identity = 222/293 (75.77%), Postives = 256/293 (87.37%), Query Frame = 3
Query:  150 GSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEIYRQYIDPNFPLKNFTLEDQAKVIVAPKSNNELDASKLKTEFPELLSI*ETLLQ*FF*PNKKT 1028
            G     + LKFLIYG+TGW+GGLLGKLC+ Q I + YG GRLE+RASL ADI ++KP+HVFNAAG+TGRPNVDWCESHK ETIR NV GTLTLADVCR+  L+++N+ATGCIFEYD+ HP GSGIGFKEED PNF GSFYSKTKAMVEELL+ F+NVCTLRVRMPISSDL+NPRNFITKI+RY KVVNIPNSMTILDELLPISIEMAKRNL GIWNFTNPGVVSHNEILE+Y+ YI+P+F   NF LE+QAKVIVAP+SNNE+D +KL  EFPE+LSI ++L++  F PNK+T
Sbjct:  372 GCSGDKRSLKFLIYGKTGWLGGLLGKLCEKQGIPYEYGKGRLEDRASLIADIRSIKPSHVFNAAGLTGRPNVDWCESHKTETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYDAAHPEGSGIGFKEEDKPNFTGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKSYIEPDFKWSNFNLEEQAKVIVAPRSNNEMDGAKLSKEFPEMLSIKDSLIKYVFEPNKRT 664          
BLAST of DY262769 vs. ExPASy Swiss-Prot
Match: YL780_MIMIV (Uncharacterized protein L780 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L780 PE=4 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 2.546e-52
Identity = 110/276 (39.86%), Postives = 165/276 (59.78%), Query Frame = 3
Query:  174 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPN---VDWCESHK--VETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFEN-VCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEIYRQYIDPNFPLKNFTLEDQAKVIVAPKSNNELDASKLKTEFPELLSI 983
            +K+LI+G  GWIG ++ K+ + Q         R ++ +++E +I+ +KP  V +  G T  P    +D+ E     VE ++ N+ G L LA +C+   + L    TGCIFE  +        GF E D PNF GS YS  K   + L+  F+N V  LR+RMPI+ +  NPR+FITKI  Y ++ +IPNSMTILD+++P+ I+MA+   TG +NFTNPG+VSHNEIL + R    PN   +N + E Q  ++ A +SNN L+  KL++ +P++  I
Sbjct:    1 MKWLIFGNKGWIGSMVSKILEQQGEQVVGAQSRADDESAVEREISEIKPDRVMSFIGRTHGPGYSTIDYLEQSGKLVENVKDNLYGPLCLAFICQKYNIHLTYLGTGCIFEGQNNFSADEK-GFTENDKPNFFGSSYSVVKGFTDRLMHFFDNDVLNLRIRMPITIE-QNPRSFITKILSYSRICSIPNSMTILDQMIPVMIDMARNKTTGTFNFTNPGLVSHNEILSLIRDIHKPNLTWENMSREQQLAILKADRSNNLLNTDKLQSLYPDVPDI 274          
The following BLAST results are available for this feature:
BLAST of DY262769 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RHM1_ARATH1.319e-13377.05Probable rhamnose biosynthetic enzyme 1 OS=Arabido... [more]
RHM2_ARATH5.012e-13371.52Probable rhamnose biosynthetic enzyme 2 OS=Arabido... [more]
RHM3_ARATH2.106e-13175.77Probable rhamnose biosynthetic enzyme 3 OS=Arabido... [more]
YL780_MIMIV2.546e-5239.86Uncharacterized protein L780 OS=Acanthamoeba polyp... [more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA100DF01RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262769 ID=DY262769; Name=DY262769; organism=Citrus clementina; type=EST; length=1168bp
ATTGAAAGCTGAAAGCCACCCAACACACACACATAGATTCCAATCAATAG
TACGAAATTCTAACAGATCCAAATTCAAATCGAAATCCGATCCAGTCTCA
TCTCTCCTTTGCATTCACTCACCATTACCCAATGGGTTTCCCAGCCAACG
GCTCCGACGCCGGCTCCAAGCCGCTCAAGTTTCTCATCTACGGCCGCACT
GGCTGGATCGGGGGCTTGCTCGGCAAGCTCTGCCAAGCTCAGTCCATTGA
CTTCACCTACGGCTCCGGCCGCCTCGAGAACCGCGCCTCCCTCGAAGCCG
ACATCGCCGCCGTCAAGCCCACCCACGTCTTCAACGCGGCCGGGGTGACC
GGTAGGCCTAACGTCGACTGGTGCGAATCGCATAAGGTCGAGACCATACG
GACTAATGTCGTCGGCACCCTTACGCTTGCTGACGTCTGCAGAGACAAAG
GTTTGATTCTCATTAATTACGCCACCGGCTGCATCTTCGAGTACGATTCC
GGTCACCCCCTCGGATCCGGCATCGGCTTCAAGGAGGAGGATACTCCGAA
TTTTGTCGGATCTTTCTACTCCAAGACTAAGGCCATGGTGGAAGAGTTGC
TCAAGAATTTTGAGAATGTCTGTACTTTGCGTGTCAGGATGCCGATCTCA
TCAGATTTATCCAATCCTCGCAACTTCATCACAAAGATCACTCGATATGA
AAAGGTAGTCAACATTCCAAACTCAATGACTATCTTGGATGAGCTTCTTC
CAATTTCCATTGAGATGGCAAAGAGAAACCTCACTGGAATTTGGAACTTT
ACCAACCCCGGTGTGGTGAGCCACAATGAGATTCTGGAGATTTATCGGCA
GTACATAGACCCCAACTTCCCGTTGAAAAATTTTACCTTGGAAGACCAAG
CAAAGGTGATTGTTGCCCCCAAGAGCAACAACGAGCTTGATGCCAGTAAA
TTAAAAACGGAATTTCCTGAACTTCTGTCCATTTGAGAAACCCTCCTCCA
ATAATTTTTTTAACCAAACAAAAAAACCACGGGAAGGTGGAACCCTTTTA
AGTTTGGAGTTTTTTCTTTTCCCCTTTTTTTGAATTTTGTTTAACCGGGG
ATAATTTAATCCCAAGCGCTTTTTCCTTCCCCCCAAAAAAAAAAGGGGAG
AGAAACCCCTCCCTCTTA
back to top