DY262775

Overview
NameDY262775
Unique NameDY262775
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1120
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2375 contig Ccv1_Contig2375:4..1123. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY262775 vs. ExPASy Swiss-Prot
Match: SKIP8_ARATH (F-box protein SKIP8 OS=Arabidopsis thaliana GN=SKIP8 PE=1 SV=1)

HSP 1 Score: 306.605 bits (784), Expect = 1.700e-82
Identity = 143/190 (75.26%), Postives = 161/190 (84.74%), Query Frame = 3 
Query:  513 GASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPVNGWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFIGKQGVDFQVQDVRARVLTDIAWVTMKTYIEIDTGPFNMTKVFKFQKGQGNMVHHPRLGML 1082
            G SMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQD + PVNGWK YYA TRA+++VN EFF IIR+R+L AM+R WLN+DYVKCIHASGELFSGYN VIQSWQ+ F  +QG DFQV  VR R+LTD+AWVTMK Y+ +D GPF +T VF+F  G+ +MVHH    ML
Sbjct:   33 GVSMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDGITPVNGWKEYYATTRAIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCFNWEQGFDFQVHTVRTRILTDMAWVTMKAYLNVDGGPFLITNVFEFHNGRWHMVHHHSSVML 222
The following BLAST results are available for this feature:
BLAST of DY262775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SKIP8_ARATH1.700e-8275.26F-box protein SKIP8 OS=Arabidopsis thaliana GN=SKI... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA100DF09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262775 ID=DY262775; Name=DY262775; organism=Citrus clementina; type=EST; length=1120bp
CGAGTCACGAGTTACAAACCTTCCCCTCTCCATCTCTCTGCAACTGCTAA
GTCATTTTTCGCAACAATTTTGGTTTTTTTTTTTCCCAAAACTATTGCAA
AAACAATTTAAAAAAAAAAAGAAAAAGAAAAGAGAAACACAACAACTTTT
ACAATTTTTTTTCTGGGTGCCTGGATAAAAGGAAAATACTAGGGTTTCAT
GGTTTTAGCAGCTCTTATGTCTTATGAATGGAGATTATCACCTCTACTTT
TTTCTCGTCCCAATTTGTCATAGCCGCGATTTTCACGATTTTCTCTCTCC
TCCTCGCTGTCCGCACTGCCCGATCAACGAAATCGACAAAACAATCGGAC
GGAGCGACCTCTGCCACGTCAGCAACGGCAAGGAAAAAATCTTGCAACTG
CACGTGTTCCTGCAACGGGCCTGCGGCGGCAAGTGCAGCCGAGCGGGAGA
TGTTGGAGGTGGGGAGACACGCCGCGACGGCGGCGACGGCTGTGGTTGCG
GAGCGTGGGAGCGGCGCGTCGATGATGGAGCAGTTAGTGCCGGAGATTAC
GACTCACGCTCTCAGTTATTTGGATTATCCAAGTTTGTGTAGGCTTTCGA
TGACCAATTCGTTGATGAGAAAAGCTGCCAATGATGATAACGCCTGGAAA
GCTCTTTATCATAAGGATTTTACTTTGGAGCAAGATAGCGTGATTCCAGT
TAATGGGTGGAAGGCTTACTATGCAGCTACAAGAGCTGTTGTGAATGTAA
ATGCAGAATTTTTCAACATTATCAGAGAAAGGTCCCTTCCAGCAATGAGT
CGTTTCTGGCTTAATGCGGATTATGTGAAGTGTATTCATGCATCAGGAGA
GCTCTTTTCAGGGTATAATTCTGTGATTCAGAGTTGGCAGATTGCTTTCA
TTGGGAAACAGGGTGTTGACTTTCAGGTTCAGGATGTACGGGCTCGGGTA
CTGACAGATATTGCTTGGGTTACCATGAAAACCTACATTGAAATTGACAC
TGGACCATTTAACATGACTAAGGTATTCAAGTTCCAAAAGGGGCAGGGGA
ACATGGTGCATCATCCACGCCTCGGGATGCTGAGTTAAAGGAAAGGGGGA
ACAAAAGGGGTGGGGGGGGG
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