DY262778

Overview
NameDY262778
Unique NameDY262778
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1163
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262778_ssr37 microsatellite DY262778_ssr37:37..48. BLAST: Citrus ESTs to Prunus persica proteins V1
DY262778_ssr172 microsatellite DY262778_ssr172:172..183. BLAST: Citrus ESTs to Prunus persica proteins V1
DY262778_ssr229 microsatellite DY262778_ssr229:229..240. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY262778 vs. ExPASy Swiss-Prot
Match: FH14_ARATH (Formin-like protein 14 OS=Arabidopsis thaliana GN=FH14 PE=2 SV=3)

HSP 1 Score: 234.572 bits (597), Expect = 8.698e-61
Identity = 125/190 (65.79%), Postives = 142/190 (74.74%), Query Frame = 1
Query:  436 GRGRLNSGVSHAPKKASLKPLHWVKVTRAMQGSLWADSQKQENHSRAPEIDISELESLFSAASDGSGTNKAGVRRGSNISKPDKVQLVELRRAYNCEIMLTKIKIPLPDMMNXXXXXXXXXXXIDQVENLIKFCPTKEEMELLKNYASDKVMLVKCELFFLEVMKGPPGRSKLPVFALKFSSPCKLMILK 1005
            GRGR  S  + APKK +LKPLHW KVTRA +GSLWAD+QKQEN  RAPEIDISELESLFSA SD +     G RRGS+ISKP+KVQLV+LRRA NCEIMLTKIKIPLPDM++           IDQVENLIKFCPTKEEMELL+NY  DK ML KCE FF+E+MK P   +KL VF  K +   ++  LK
Sbjct:  802 GRGRGVSVPTAAPKKTALKPLHWSKVTRAAKGSLWADTQKQENQPRAPEIDISELESLFSAVSDTTAKKSTG-RRGSSISKPEKVQLVDLRRANNCEIMLTKIKIPLPDMLSAVLALDSLALDIDQVENLIKFCPTKEEMELLRNYTGDKEMLGKCEQFFMELMKVPRIEAKLRVFGFKITFASQVEELK 990          
BLAST of DY262778 vs. ExPASy Swiss-Prot
Match: FH3_ORYSJ (Formin-like protein 3 OS=Oryza sativa subsp. japonica GN=FH3 PE=2 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 1.373e-60
Identity = 116/181 (64.09%), Postives = 136/181 (75.14%), Query Frame = 1
Query:  436 GRGRLNSGVSHAPKKASLKPLHWVKVTRAMQGSLWADSQKQENHSRAPEIDISELESLFSAASDGSGTNKAGVRRGSNISKPDKVQLVELRRAYNCEIMLTKIKIPLPDMMNXXXXXXXXXXXIDQVENLIKFCPTKEEMELLKNYASDKVMLVKCELFFLEVMKGPPGRSKLPVFALKFS 978
            GRG   +  S+ PKKASLKPLHWVKVTRAMQGSLW D+QKQ N +RAP+ID+SELESLFS A   + + K G +RGS ISKP+ V LV++RRA NCEIMLTKIK+PLPDM+N            DQVENLIKFCPTKEE+E+LKNY  +K ML KCE FFLE+MK P   SKL VFA + +
Sbjct:  820 GRGIGLAQQSNPPKKASLKPLHWVKVTRAMQGSLWEDAQKQGNQARAPDIDLSELESLFSTAVATNASEKGGTKRGSAISKPEIVHLVDMRRANNCEIMLTKIKMPLPDMINAILALDTSVLDNDQVENLIKFCPTKEEIEMLKNYNGNKEMLGKCEQFFLELMKVPRVESKLRVFAFRIT 1000          

HSP 2 Score: 31.9574 bits (71), Expect = 1.373e-60
Identity = 20/47 (42.55%), Postives = 30/47 (63.83%), Query Frame = 3
Query:  966 FKIFFSMQVDDLETNLNTINGAS*KGKKIPETGVK*CKQFLTLGKSL 1106
            F+I FS QV++L TNL TIN A+ + K+  +   +  +  LTLG +L
Sbjct:  997 FRITFSTQVEELRTNLTTINDATKEVKESLKLR-QIMQTILTLGNAL 1042          
BLAST of DY262778 vs. ExPASy Swiss-Prot
Match: FH20_ARATH (Formin-like protein 20 OS=Arabidopsis thaliana GN=FH20 PE=2 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 3.428e-49
Identity = 106/195 (54.36%), Postives = 130/195 (66.67%), Query Frame = 1
Query:  427 ANHGRGRLNSGV-SHAPKKASLKPLHWVKVTRAMQGSLWADSQKQENHSRAPEIDISELESLFSAASDGSGTNKAGVRRGSNISKPDKVQLVELRRAYNCEIMLTKIKIPLPDMMNXXXXXXXXXXXIDQVENLIKFCPTKEEMELLKNYASDKVMLVKCELFFLEVMKGPPGRSKLPVFALKFSSPCKLMILKR 1008
            A  GRG    G  S A KK+SLKPLHWVKVTRA+QGSLW + Q+        E D+SE+E+LFSA       +K+G RR S  +KP+KVQL++LRRA N EIMLTK+K+PLPDMM            +DQ+ENLIKFCPTKEEMELLKNY  DK  L KCE +FLE+MK P   +KL VF+ KF    ++   K+
Sbjct: 1192 AGRGRGLPRPGFGSAAQKKSSLKPLHWVKVTRALQGSLWDELQRHGESQTPSEFDVSEIETLFSATVQ-KPADKSGSRRKSVGAKPEKVQLIDLRRANNTEIMLTKVKMPLPDMMAAVLAMDESVLDVDQIENLIKFCPTKEEMELLKNYTGDKTTLGKCEQYFLELMKVPRVEAKLRVFSFKFQFGTQITEFKK 1385          
BLAST of DY262778 vs. ExPASy Swiss-Prot
Match: FH13_ARATH (Formin-like protein 13 OS=Arabidopsis thaliana GN=FH13 PE=2 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 6.465e-48
Identity = 103/198 (52.02%), Postives = 135/198 (68.18%), Query Frame = 1
Query:  418 SGPANHGRGR-LNSGVSHAPKKASLKPLHWVKVTRAMQGSLWADSQKQENHSRAPEIDISELESLFSA-ASDGSGTNKAGVRRGSNISKPDKVQLVELRRAYNCEIMLTKIKIPLPDMMNXXXXXXXXXXXIDQVENLIKFCPTKEEMELLKNYASDKVMLVKCELFFLEVMKGPPGRSKLPVFALKFSSPCKLMILK 1005
            +GP + G+GR L   + ++P K  LKP HW+K+TRA+ GSLWA++Q     S+AP+ID++ELESLFSA A + +G ++    RG    KP+KVQL+E RRAYNCEIML+K+K+PL D+ N            DQVENLIKFCPT+EEMELLK Y  DK  L KCELFFLE+MK P   +KL VF+ K     ++  L+
Sbjct:  816 TGPLSSGKGRMLRVNLKNSPAK-KLKPYHWLKLTRAVNGSLWAETQMSSEASKAPDIDMTELESLFSASAPEQAGKSRLDSSRGP---KPEKVQLIEHRRAYNCEIMLSKVKVPLQDLTNSVLNLEESALDADQVENLIKFCPTREEMELLKGYTGDKDKLGKCELFFLEMMKVPRVETKLRVFSFKMQFTSQISELR 1009          
BLAST of DY262778 vs. ExPASy Swiss-Prot
Match: FH6_ORYSJ (Formin-like protein 6 OS=Oryza sativa subsp. japonica GN=FH6 PE=2 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 8.444e-48
Identity = 107/200 (53.50%), Postives = 135/200 (67.50%), Query Frame = 1
Query:  418 SGPANHGRGRLNSGVSHAPKKASLKPLHWVKVTRAMQGSLWADSQKQENHSRAPEIDISELESLFSA---ASDGSGTNKAGVRRGSNISKPDKVQLVELRRAYNCEIMLTKIKIPLPDMMNXXXXXXXXXXXIDQVENLIKFCPTKEEMELLKNYASDKVMLVKCELFFLEVMKGPPGRSKLPVFALKFSSPCKLMILKR 1008
            SGP +     L SG + A ++++LKPLHWVKVTRAMQGSLW +SQK +  S+ P  D+SELE LFSA   +SDG  ++K+G R     SKP+K+ L++LRRA NC IMLTK+K+PLPD+M+            DQVENLIKF PTKEE ELLK Y  DK +L +CE FF+E+MK P   SKL VF  K   P ++  LKR
Sbjct:  913 SGPMSRS---LQSGQA-ASRRSNLKPLHWVKVTRAMQGSLWEESQKTDEASKPPVFDMSELEHLFSAVLPSSDGKRSDKSGSRASG--SKPEKIHLIDLRRANNCGIMLTKVKMPLPDLMSAILTLDDTILDADQVENLIKFTPTKEEAELLKGYKGDKQVLGECEQFFMELMKLPRVDSKLRVFLFKIQFPSQVSDLKR 1106          
BLAST of DY262778 vs. ExPASy Swiss-Prot
Match: FH12_ORYSJ (Formin-like protein 12 OS=Oryza sativa subsp. japonica GN=FH12 PE=3 SV=3)

HSP 1 Score: 190.274 bits (482), Expect = 1.881e-47
Identity = 105/187 (56.15%), Postives = 124/187 (66.31%), Query Frame = 1
Query:  421 GPANHGRGR---LNSGVSHAPKKASLKPLHWVKVTRAMQGSLWADSQKQENHSRAPEIDISELESLFSAASDGSGTNKAGVRRGSNISKPDKVQLVELRRAYNCEIMLTKIKIPLPDMMNXXXXXXXXXXXIDQVENLIKFCPTKEEMELLKNYASDKVMLVKCELFFLEVMKGPPGRSKLPVFALK 972
            G   HG  R   LNS  +   ++++LKPLHWVKVTRAM GSLWA+ QKQ + +   E D+ ELESLF+ A    G +K+     S  SKPDKV L++LRRA N EIMLTKIK+PLPDMM+            DQ+ENLIKFCPTKEEMELLKNY  DK  L KCE FFLE+MK P   SK  +FA K
Sbjct: 1234 GVVGHGLTRSLGLNSAAT--ARRSTLKPLHWVKVTRAMHGSLWAEIQKQADANSHSEFDVKELESLFAIAPKTKGGSKSDGASKSLGSKPDKVHLIDLRRANNTEIMLTKIKMPLPDMMSAALALDDSVLDADQLENLIKFCPTKEEMELLKNYTGDKETLGKCEQFFLELMKVPRVESKFRIFAFK 1418          
BLAST of DY262778 vs. ExPASy Swiss-Prot
Match: FH5_ORYSJ (Formin-like protein 5 OS=Oryza sativa subsp. japonica GN=FH5 PE=2 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 4.191e-47
Identity = 99/181 (54.70%), Postives = 127/181 (70.17%), Query Frame = 1
Query:  469 APKKASLKPLHWVKVTRAMQGSLWADSQKQENHSRAPEIDISELESLFSAA-SDGSGTNKAGVRRGSNISKPDKVQLVELRRAYNCEIMLTKIKIPLPDMMNXXXXXXXXXXXIDQVENLIKFCPTKEEMELLKNYASDKVMLVKCELFFLEVMKGPPGRSKLPVFALKFSSPCKLMILKR 1008
            A +K++LKPLHW+KVTRA+QGSLW + Q+ ++     E D+SELESLF AA    + ++K+  RR S  SKP+KV L+ELRRA N EIMLTK+K+PLPD+++           +DQVENLIKFCPTKEEMELLKNY  DK  L KCE FFLE+MK P   SKL VF+ K     ++  L++
Sbjct: 1192 AARKSTLKPLHWIKVTRALQGSLWEELQRNDDSQSVSEFDLSELESLFPAAVPKPNDSSKSDSRRKSLGSKPEKVHLIELRRANNTEIMLTKVKMPLPDLVSAALALDQSTLDVDQVENLIKFCPTKEEMELLKNYTGDKENLGKCEQFFLELMKVPRMESKLRVFSFKIQFGSQVADLRK 1372          
BLAST of DY262778 vs. ExPASy Swiss-Prot
Match: FH18_ARATH (Formin-like protein 18 OS=Arabidopsis thaliana GN=FH18 PE=2 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 2.716e-46
Identity = 99/193 (51.30%), Postives = 130/193 (67.36%), Query Frame = 1
Query:  436 GRGRL-NSGVSHAPKKASLKPLHWVKVTRAMQGSLWADSQKQENHSRAPEIDISELESLFSAASDGSGTNKAGVRRGSNIS-KPDKVQLVELRRAYNCEIMLTKIKIPLPDMMNXXXXXXXXXXXIDQVENLIKFCPTKEEMELLKNYASDKVMLVKCELFFLEVMKGPPGRSKLPVFALKFSSPCKLMILKR 1008
            GRG L N       +KA+LKP HW+K+TRA+QGSLWA++QK +  + AP+ DISELE LFSA +  S +   G + G     K +KVQL+ELRRAYNCEIML+K+KIPLPD+M+           +DQV+NLIKFCPTKEE ELLK +  +K  L +CE FFLE++K P   +KL VF+ K     ++  L+R
Sbjct:  694 GRGILQNLKGQGQTRKANLKPYHWLKLTRAVQGSLWAEAQKSDEAATAPDFDISELEKLFSAVNLSSDSENNGGKSGRRARPKVEKVQLIELRRAYNCEIMLSKVKIPLPDLMSSVLALDESVIDVDQVDNLIKFCPTKEEAELLKGFTGNKETLGRCEQFFLELLKVPRVETKLRVFSFKIQFHSQVTDLRR 886          
BLAST of DY262778 vs. ExPASy Swiss-Prot
Match: FH17_ARATH (Formin-like protein 17 OS=Arabidopsis thaliana GN=FH17 PE=2 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 1.348e-45
Identity = 92/179 (51.40%), Postives = 125/179 (69.83%), Query Frame = 1
Query:  475 KKASLKPLHWVKVTRAMQGSLWADSQKQENHSRAPEIDISELESLFSAASDGSGTNKAGVRRGSNIS-KPDKVQLVELRRAYNCEIMLTKIKIPLPDMMNXXXXXXXXXXXIDQVENLIKFCPTKEEMELLKNYASDKVMLVKCELFFLEVMKGPPGRSKLPVFALKFSSPCKLMILKR 1008
            +KA+LKP HW+K+TRA+QGSLWA++QK +  + AP+ DISE+E LFSA +  S +   G + G     K +KVQL+EL+RAYNCEIML+K+KIPLPD+M+           +DQV+NLIKFCPTKEE ELLK +  +K  L +CE FFLE++K P   +KL VF+ K     ++  L+R
Sbjct:   92 RKANLKPYHWLKLTRAVQGSLWAEAQKSDEAATAPDFDISEIEKLFSAVNLSSNSENNGGKSGRRARPKVEKVQLIELKRAYNCEIMLSKVKIPLPDLMSSVLALDESVIDVDQVDNLIKFCPTKEEAELLKGFIGNKETLGRCEQFFLELLKVPRVETKLRVFSFKIQFHSQVTDLRR 270          
BLAST of DY262778 vs. ExPASy Swiss-Prot
Match: FH7_ORYSJ (Formin-like protein 7 OS=Oryza sativa subsp. japonica GN=FH7 PE=2 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 4.795e-43
Identity = 95/181 (52.49%), Postives = 120/181 (66.30%), Query Frame = 1
Query:  463 SHAPKKASLKPLHWVKVTRAMQGSLWADSQKQENHSRAPEIDISELESLFSAASDGSGTNKAGVRRGSNISKPDKVQLVELRRAYNCEIMLTKIKIPLPDMMNXXXXXXXXXXXIDQVENLIKFCPTKEEMELLKNYASDKVMLVKCELFFLEVMKGPPGRSKLPVFALKFSSPCKLMILK 1005
            + + K+  LKPLHWVKV+RA QGSLWA++QK +  SR PEIDISELESLFS A       +A  +R S  +K +KV L++L+R+ NCEIML  IK+PLPD+MN            DQV+ LIKFCPTKEEMELLK +  +K  L KCE FFLE+MK P   SKL + + K     ++  LK
Sbjct:  976 NQSSKRTPLKPLHWVKVSRATQGSLWAETQKSDEASRTPEIDISELESLFSVAMPNMEEKRAR-QRPSVAAKQEKVLLIDLQRSKNCEIMLRNIKMPLPDLMNSVLALDDSIVDGDQVDYLIKFCPTKEEMELLKGFTGNKENLGKCEQFFLEMMKVPRVESKLRILSFKIKFLTQVADLK 1155          
The following BLAST results are available for this feature:
BLAST of DY262778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
FH14_ARATH8.698e-6165.79Formin-like protein 14 OS=Arabidopsis thaliana GN=... [more]
FH3_ORYSJ1.373e-6064.09Formin-like protein 3 OS=Oryza sativa subsp. japon... [more]
FH20_ARATH3.428e-4954.36Formin-like protein 20 OS=Arabidopsis thaliana GN=... [more]
FH13_ARATH6.465e-4852.02Formin-like protein 13 OS=Arabidopsis thaliana GN=... [more]
FH6_ORYSJ8.444e-4853.50Formin-like protein 6 OS=Oryza sativa subsp. japon... [more]
FH12_ORYSJ1.881e-4756.15Formin-like protein 12 OS=Oryza sativa subsp. japo... [more]
FH5_ORYSJ4.191e-4754.70Formin-like protein 5 OS=Oryza sativa subsp. japon... [more]
FH18_ARATH2.716e-4651.30Formin-like protein 18 OS=Arabidopsis thaliana GN=... [more]
FH17_ARATH1.348e-4551.40Formin-like protein 17 OS=Arabidopsis thaliana GN=... [more]
FH7_ORYSJ4.795e-4352.49Formin-like protein 7 OS=Oryza sativa subsp. japon... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100DG01RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262778 ID=DY262778; Name=DY262778; organism=Citrus clementina; type=EST; length=1163bp
CAACCCTTTTTTCATCCACCGCCACCGCCACCGCCGCCACCACCACCATT
TCCGCCTTCCTCCTTGGGTAAGATAACTAACAAGCTACAGCCTGCACCTA
CTTCCCAACCAGCAGTACCTCCTCCTCCACCGCCACCTCCAAAATCGTCC
TCTACCTCTATACCTATGGCACCTCCTCCTCCTCCCTCTATAGGTTGTAA
GCCCATTAATGCCCCTAGGCCACCTCCGCCTCCTCCTCCTTTAGGACCTT
CACGGTCAGGTGCAGTCCCACCGCCTCCACCACCAGCACCCAAACTTCCT
ACTGCTCCTTCTCCACCTAGTCGTGGTGTAATGCCAAGCCCTCCCCCACC
ACCTGGAGTGAAGAGTTCCAGTGTGCCCCCACCACCACTCCCATCTGTTG
GAAAGGGAAAAGTGACATCAGGGCCAGCAAACCATGGTAGAGGTCGATTA
AACAGTGGAGTTAGTCATGCTCCTAAGAAAGCTTCATTGAAGCCTTTGCA
TTGGGTAAAAGTTACCCGAGCAATGCAAGGGAGTCTATGGGCTGATTCTC
AGAAACAGGAAAATCACTCAAGGGCCCCTGAAATAGATATTTCCGAACTT
GAAAGTCTGTTCTCAGCAGCTTCAGATGGAAGTGGCACTAACAAAGCTGG
AGTTCGACGTGGTTCTAATATCAGCAAACCAGACAAAGTACAATTGGTTG
AGTTGCGTAGAGCATATAATTGTGAAATAATGCTCACGAAAATAAAAATT
CCTCTGCCAGATATGATGAATGCACTTCTAGCTTTGGATTCATCAGCTCT
AGATATTGATCAAGTTGAGAATCTAATCAAGTTCTGTCCAACTAAGGAAG
AGATGGAATTGTTGAAGAACTATGCAAGCGATAAAGTTATGCTTGTAAAG
TGCGAACTGTTTTTTCTGGAAGTGATGAAAGGTCCACCGGGTAGATCCAA
GTTGCCTGTATTTGCTTTAAAATTTTCTTCTCCATGCAAGTTGATGATCT
TGAAACGAATCTAAATACCATTAATGGTGCTTCTTGAAAAGGTAAAAAAA
TCCCTGAAACTGGCGTAAAATAATGCAAACAATTTCTCACTTTGGGAAAA
AGCCTTTGAACCAAAGAAATGGACCAAAGATTCGGGGGGGGGGGTTTAAA
TTTAAAACCCCTT
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