DY262780

Overview
NameDY262780
Unique NameDY262780
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1207
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262780 vs. ExPASy Swiss-Prot
Match: CHID1_MOUSE (Chitinase domain-containing protein 1 OS=Mus musculus GN=Chid1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.301e-18
Identity = 60/181 (33.15%), Postives = 90/181 (49.72%), Query Frame = 3
Query:  498 MHQRGLVKTDVNYQEILTEN-SKVSENASHRYYTYPVLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQGTSLI-LEGRHNADAGWLLELRK--GDALVLPRVVLEAFPXXXXXXXXXXXXXXXXXXTE----CKEMEYDGIVLESWSTWTAYGILHDQKLRNMGL-EFIKQLGNALH 1013
            +  RGLV TD+  ++++ E+ S  S  A  R +   VL Y+TPWNS GY++AK+F SKFT +SPVW  LK +G  +  + G H+ D GW+  ++K      ++PR++ E +                          K   +DG V+E WS       L  QK  ++GL   +  L  ALH
Sbjct:   45 VQDRGLVVTDIKAEDVVLEHRSYCSSRARERNFAGEVLGYVTPWNSHGYDVAKVFGSKFTQISPVWLQLKRRGREMFEITGLHDVDQGWMRAVKKHAKGVRIVPRLLFEDWTYDDFRNVLDSEDEIEELSKTVAQVAKNQHFDGFVVEVWSQ------LLSQK--HVGLIHMLTHLAEALH 217          
BLAST of DY262780 vs. ExPASy Swiss-Prot
Match: CHID1_RAT (Chitinase domain-containing protein 1 OS=Rattus norvegicus GN=Chid1 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 5.617e-18
Identity = 60/181 (33.15%), Postives = 90/181 (49.72%), Query Frame = 3
Query:  498 MHQRGLVKTDVNYQEILTEN-SKVSENASHRYYTYPVLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQGTSLI-LEGRHNADAGWLLELRK--GDALVLPRVVLEAFPXXXXXXXXXXXXXXXXXXTE----CKEMEYDGIVLESWSTWTAYGILHDQKLRNMGL-EFIKQLGNALH 1013
            +  RGLV TD+  ++++ E+ S  S  A  R +   VL Y+TPWNS GY++AK+F SKFT +SPVW  LK +G  +  + G H+ D GW+  ++K      ++PR++ E +                          K   +DG V+E WS       L  QK  ++GL   +  L  ALH
Sbjct:   45 VQDRGLVVTDIKAEDVVLEHRSYCSARARERNFAGEVLGYVTPWNSHGYDVAKVFGSKFTQISPVWLQLKRRGREMFEITGLHDVDQGWMRAVKKHAKGVRIVPRLLFEDWTYDDFRSVLDSEDEIEELSKTVVQVAKNQHFDGFVVEVWSQ------LLSQK--HVGLIHMLTHLAEALH 217          
BLAST of DY262780 vs. ExPASy Swiss-Prot
Match: CHID1_XENLA (Chitinase domain-containing protein 1 OS=Xenopus laevis GN=chid1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.581e-18
Identity = 57/190 (30.00%), Postives = 94/190 (49.47%), Query Frame = 3
Query:  471 TRANRSATHMHQRGLVKTDVNYQEILTEN-SKVSENASHRYYTYPVLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQGTSLI-LEGRHNADAGWLLELRK--GDALVLPRVVLEAFP----XXXXXXXXXXXXXXXXXXTECKEMEYDGIVLESWSTWTAYGILHDQKLRNMGLEFIKQLGNALHS 1016
            T+   S T +  RGLV TDV  ++I+ E+ S  ++    R+ +  VL Y+TPWN  GY++AK F +KFT +S VW  ++ +G     + G H+ D GW+ ++RK      ++PR++ + +                          K+  +DG V+E WS       L  QK + + +  +  +G ALHS
Sbjct:   36 TKTRLSDTSVQSRGLVSTDVKAKDIVLEHRSYCAKKLKERHVSADVLGYVTPWNGHGYDIAKTFAAKFTLISSVWLQIRRKGREAYQVTGLHDVDQGWIKDIRKTSKSTQIVPRILFDGWSYQDFESVFNSEDEIEELAGAMVQTAKDEHFDGFVVEVWSQ------LGGQKRQEL-VHLLIHIGEALHS 218          
BLAST of DY262780 vs. ExPASy Swiss-Prot
Match: CHID1_XENTR (Chitinase domain-containing protein 1 OS=Xenopus tropicalis GN=chid1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.251e-17
Identity = 51/160 (31.87%), Postives = 82/160 (51.25%), Query Frame = 3
Query:  471 TRANRSATHMHQRGLVKTDVNYQEILTEN-SKVSENASHRYYTYPVLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQGTSLI-LEGRHNADAGWLLELRK--GDALVLPRVVLEAFP----XXXXXXXXXXXXXXXXXXTECKEMEYDGIVLESWS 926
            T+   S T +  RGLV TDV  ++I+ E+ S  ++    R+ +  VL Y+TPWN  GY++AK F +KFT +SPVW  +K +G     + G H+ D GW+ ++RK      ++PR++ + +                          K+  +DG V+E WS
Sbjct:   37 TKTRLSDTLVQTRGLVSTDVKAKDIVLEHRSYCAKKLKERHVSADVLGYVTPWNGHGYDIAKTFAAKFTLISPVWLQIKRKGKEAYHITGLHDVDQGWIKDIRKTSKSTQIVPRILFDGWSYQDFESVFSSEDEIEELAGAMVQTAKDERFDGFVVEVWS 196          
BLAST of DY262780 vs. ExPASy Swiss-Prot
Match: CHID1_DICDI (Chitinase domain-containing protein 1 OS=Dictyostelium discoideum GN=chid1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.251e-17
Identity = 63/217 (29.03%), Postives = 107/217 (49.31%), Query Frame = 3
Query:  504 QRGLVKTDVNYQEILTENSKVSENASHRYYTYP-VLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQGTSLILEGRHNADAGWLLELRKGD---ALVLPRVVLEA--FPXXXXXXXXXXXXXXXXXXTECKEMEYDGIVLESWSTWTAYGILH-DQKLRNMGLEFIKQLGNALHS-GDSLKNRSNFCIWPMS*VHPIPKKSQPLNFGPGEFAKL 1130
            QRGLV+ +V+ ++I+   +K  +N   + +     L YITPWN KGY++A  +  KFTH+SPVW+ +K +   +++EG HN D  W+ ++++     + +LPR   E   +                   +  K+  YDG+V+E        GI+H +++LR+    F+  L   LHS G  +          +  ++P  +K Q   FG  +F  L
Sbjct:   46 QRGLVRENVSAKQIINNYNKYFKNVDIKNFEQGNTLVYITPWNGKGYDVATKWAKKFTHISPVWHQVKFENNKVMIEGDHNIDKKWMEKVKENSDQKSKILPRFSFEGQQWGSKESFQKYIDPKLIDSLVSTVKKNNYDGLVIE--------GIVHINKQLRD---PFLISLSEKLHSIGKEI----------ILVIYPFRQKGQETGFGAKDFELL 241          
BLAST of DY262780 vs. ExPASy Swiss-Prot
Match: CHID1_PONAB (Chitinase domain-containing protein 1 OS=Pongo abelii GN=CHID1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.788e-17
Identity = 57/180 (31.67%), Postives = 88/180 (48.89%), Query Frame = 3
Query:  498 MHQRGLVKTDVNYQEILTEN-SKVSENASHRYYTYPVLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQGTSLI-LEGRHNADAGWLLELRK--GDALVLPRVVLEAFPXXXXXXXXXXXXXXXXXXTE----CKEMEYDGIVLESWSTWTAYGILHDQKLRNMGLEFIKQLGNALH 1013
            + +RGLV TD+  + ++ E+ S  S  A  R++   VL Y+TPWNS GY++ K+F SKFT +SPVW  LK +G  +  + G H+ D GW+  +RK      ++PR++ E +                          K   +DG V+E W+       L  QK   + +  +  L  ALH
Sbjct:   45 VQERGLVVTDLKAESVVLEHRSYCSAKARDRHFAGDVLGYVTPWNSHGYDVTKVFGSKFTQISPVWLQLKRRGREMFEVTGLHDVDQGWMRAVRKHAKGLHIVPRLLFEDWTYDDFRNVLDSEDEIEELSKTVVQVAKNQHFDGFVVEVWNQ------LLSQKRVGL-IHMLTHLAEALH 217          
BLAST of DY262780 vs. ExPASy Swiss-Prot
Match: CHID1_HUMAN (Chitinase domain-containing protein 1 OS=Homo sapiens GN=CHID1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 4.755e-17
Identity = 57/180 (31.67%), Postives = 87/180 (48.33%), Query Frame = 3
Query:  498 MHQRGLVKTDVNYQEILTEN-SKVSENASHRYYTYPVLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQGTSLI-LEGRHNADAGWLLELRK--GDALVLPRVVLEAFPXXXXXXXXXXXXXXXXXXTE----CKEMEYDGIVLESWSTWTAYGILHDQKLRNMGLEFIKQLGNALH 1013
            +  RGLV TD+  + ++ E+ S  S  A  R++   VL Y+TPWNS GY++ K+F SKFT +SPVW  LK +G  +  + G H+ D GW+  +RK      ++PR++ E +                          K   +DG V+E W+       L  QK   + +  +  L  ALH
Sbjct:   45 VQDRGLVVTDLKAESVVLEHRSYCSAKARDRHFAGDVLGYVTPWNSHGYDVTKVFGSKFTQISPVWLQLKRRGREMFEVTGLHDVDQGWMRAVRKHAKGLHIVPRLLFEDWTYDDFRNVLDSEDEIEELSKTVVQVAKNQHFDGFVVEVWNQ------LLSQKRVGL-IHMLTHLAEALH 217          
BLAST of DY262780 vs. ExPASy Swiss-Prot
Match: CHID1_DANRE (Chitinase domain-containing protein 1 OS=Danio rerio GN=chid1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 8.968e-16
Identity = 50/148 (33.78%), Postives = 75/148 (50.68%), Query Frame = 3
Query:  507 RGLVKTDVNYQEILTENSKVSENASH-RYYTYPVLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQG-TSLILEGRHNADAGWLLELRKGDA--LVLPRVVLEAFPXXXXXXXXXXXXXXXXXXTECKEME----YDGIVLESWS 926
            RGLV TD  +++I+ E  +      + R +   VL YITPWNS GY++AK+F  K T +SPVW  L+ +G  S  + G H+ D GW+  +RK +    +LPR++ + +                    E  E+     +DG  LE WS
Sbjct:   47 RGLVVTDPQWRDIVREEKRFCHQCINTRQFKGAVLGYITPWNSHGYDIAKLFGPKLTSVSPVWLQLRRRGPESFHITGLHDHDPGWVKAVRKANKKNKILPRLLFDGWSYQDYVSVLDSEDEMEELGREALEVAKAEGFDGYTLELWS 194          
BLAST of DY262780 vs. ExPASy Swiss-Prot
Match: CHID1_BOVIN (Chitinase domain-containing protein 1 OS=Bos taurus GN=CHID1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.171e-15
Identity = 48/149 (32.21%), Postives = 76/149 (51.01%), Query Frame = 3
Query:  504 QRGLVKTDVNYQEILTEN-SKVSENASHRYYTYPVLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQGTSLI-LEGRHNADAGWLLELRK--GDALVLPRVVLEAFPXXXXXXXXXXXXXXXXXXTE----CKEMEYDGIVLESWS 926
            +RGLV TD+  ++++ E+ S  S  A  +++   VL YITPWN  GY++AK+F  KFTH++PVW  L+  G  +  + G  + D GWL  +RK      ++PR+  E +                          K   +DG+V+E W+
Sbjct:   47 ERGLVVTDLRAEDVVLEHRSYCSAKAHRKHFAGDVLGYITPWNRHGYDVAKIFGGKFTHVAPVWLQLRRHGREMFEVTGLDDVDQGWLRAVRKQAKGLRIVPRLRFEDWTYEDFDSVLDNEDEIEELSRTVVQVAKSQHFDGLVVEVWN 195          
The following BLAST results are available for this feature:
BLAST of DY262780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
CHID1_MOUSE4.301e-1833.15Chitinase domain-containing protein 1 OS=Mus muscu... [more]
CHID1_RAT5.617e-1833.15Chitinase domain-containing protein 1 OS=Rattus no... [more]
CHID1_XENLA9.581e-1830.00Chitinase domain-containing protein 1 OS=Xenopus l... [more]
CHID1_XENTR1.251e-1731.88Chitinase domain-containing protein 1 OS=Xenopus t... [more]
CHID1_DICDI1.251e-1729.03Chitinase domain-containing protein 1 OS=Dictyoste... [more]
CHID1_PONAB2.788e-1731.67Chitinase domain-containing protein 1 OS=Pongo abe... [more]
CHID1_HUMAN4.755e-1731.67Chitinase domain-containing protein 1 OS=Homo sapi... [more]
CHID1_DANRE8.968e-1633.78Chitinase domain-containing protein 1 OS=Danio rer... [more]
CHID1_BOVIN1.171e-1532.21Chitinase domain-containing protein 1 OS=Bos tauru... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA100DG03RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262780 ID=DY262780; Name=DY262780; organism=Citrus clementina; type=EST; length=1207bp
CGGTTAGTGTCCTTTGACCCCAAGCGTTTTAATGTCAATAGGTTTTTATT
TTTTAACGACCAGTTTAATGCAAATGAGTACTTCCGTCCTTAATTGAGTG
ATCATATAATATTAGGGATCCGTGTGGGAACCCAAAACCAAAAGAATGAA
ACGACATGTCGAAGTAATGACAAGTGAAAATCAGACCCGTCGTAAGTATA
ATCTGTTTACAAACGCTATGAAGGAAGCTCTTTTCCATCCAAATCCCTCT
ACCTTTTGAATTGGCCGTTAGACAAAACACAGAAATGGCGAAAAGGAGAG
ACCGCCGAGTTGCACCGAGCCCGGGCCGTCCTAAAAACCGAGTCGAATCG
GCTGCTCGATTAGACCAGTTCAGCGACTCAGCTTCCGATCGCAAGCTCAT
CACCATTTTCGTTATCTTCTTCATCGTGATTCCCACCGTGTCCGTACTCT
TATACTGTACCAAATACTCTACACGCGCCAACCGTTCGGCGACTCACATG
CATCAGCGAGGACTCGTCAAAACTGATGTGAATTACCAAGAAATCCTCAC
GGAGAATTCAAAGGTTTCAGAGAATGCGTCCCATCGGTATTACACGTATC
CCGTATTGGCCTATATTACTCCATGGAATTCTAAGGGCTATGAACTGGCC
AAGATGTTCAATTCTAAATTTACACACTTATCACCTGTTTGGTATGATCT
CAAGAGCCAGGGAACTAGCTTAATCCTGGAAGGAAGACATAATGCAGATG
CAGGATGGCTTTTGGAGCTTAGAAAAGGAGATGCCCTGGTGTTACCCAGA
GTGGTTCTGGAAGCATTTCCAAAGGAGCTTCTCAGAAAGAAGAAACTGAG
GGACAAAGCCATTGACCTTATATTAACAGAGTGCAAGGAAATGGAATATG
ATGGTATAGTGCTAGAGTCTTGGTCCACGTGGACAGCTTATGGCATTTTG
CATGATCAAAAATTGCGGAATATGGGACTAGAGTTTATAAAACAACTTGG
AAATGCCCTGCACAGTGGTGACTCATTGAAAAACAGGAGCAACTTTTGCA
TTTGGCCTATGTCATAGGTCCACCCCATTCCAAAAAAATCCCAACCACTT
AACTTTGGGCCCGGGGAATTTGCAAAACTTGGAGGGAGCCCGGAAAAGGG
TTTTCACATAAAGGAATTTTAAAAATTCCCCAGGGCCCCCCAACCCCCCG
GCTCCTA
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