DY262781

Overview
NameDY262781
Unique NameDY262781
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1157
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262781 vs. ExPASy Swiss-Prot
Match: AMPD_ARATH (AMP deaminase OS=Arabidopsis thaliana GN=AMPD PE=1 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 2.315e-57
Identity = 127/251 (50.60%), Postives = 158/251 (62.95%), Query Frame = 1
Query:  184 HRKTLTQLLEFAKSVERERDDNSDAAESPHNVKRHXXXXXXXXXXXXXXXXXXXXXSASLPDVTAISGHAVDG---EERRNGPLHVDGIPAGLPRLHTLPEGKSAGH-ASSTKRAGNLIRPTSPKSPVASA--FESVEGSDEEDNMTDSSKLDTTYLLTNGNAGPNLPDHMNVNAEAIAASSMIRSHSVSGDLHGVQPDPIAADILRKEPEQETFARLQITPKEVPSPDEMEAYVVLQECLEMRKNIYSEE 918
            H K L  +LE  K  ER+ + + D  ++P  V+R                       ASLPD T  +     G     R NG ++VD IP GLPRLHT  EG+++ H ASS ++ G+ +RP SPKSPVASA  FESVE SD++DN+T+S  LD +YL  NG+    +P   N    ++AASSMIRSHSVSGDLHGVQPDPIAADILRKEPEQETF RL + P EVP+ DE+EAY  LQECLE+RK    +E
Sbjct:   27 HFKALNLVLERGK--ERKENPDGDEPQNPTLVRRRSQVRRKVNDQYGRSP-------ASLPDATPFTDGGGGGGGDTGRSNGHVYVDEIPPGLPRLHTPSEGRASVHGASSIRKTGSFVRPISPKSPVASASAFESVEESDDDDNLTNSEGLDASYLQANGDN--EMPADANEEQISMAASSMIRSHSVSGDLHGVQPDPIAADILRKEPEQETFVRLNV-PLEVPTSDEVEAYKCLQECLELRKRYVFQE 265          

HSP 2 Score: 36.5798 bits (83), Expect = 2.315e-57
Identity = 16/29 (55.17%), Postives = 20/29 (68.97%), Query Frame = 2
Query:  935 ERMISDPITPKANPDPFYYAPVGKSDSHF 1021
            + +ISDP TPK N +PF + P GKSD  F
Sbjct:  272 KEVISDPSTPKPNTEPFAHYPQGKSDHCF 300          
BLAST of DY262781 vs. ExPASy Swiss-Prot
Match: AMPD_ORYSJ (Probable AMP deaminase OS=Oryza sativa subsp. japonica GN=AMPD PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 3.192e-39
Identity = 105/262 (40.08%), Postives = 142/262 (54.20%), Query Frame = 1
Query:  184 HRKTLTQLLEFAKSVERERD---------DNSDAAESPHNVKRHXXXXXXXXXXXXXXXXXXXXXSASLPDVTAISGHAVDGEERRNGPLHVDGIPAGLPRLHTLPEGKSAGHASSTKRAGNLIRPTSPKSPV--ASAFESVEGSDEED-NMTDSSKLDTTYLLTNGNAGPN-LPDHMNVNAEA--IAASSMIRSHSVSGDLHGVQPDPIAADILRKEPEQETFARLQITPKEVPSPDEMEAYVVLQECLEMRKNIYSEEQL 924
            HRKTL QLL FA+S++R+           D+ D  + P +  R                        +LP                        IP GLP LHT  EGK     +STKR G L+RPT+P+SPV   SAFE++E SD++D N+   +K +   LLTNG  G + LP   + N +   + +++MIRS S +G LHG Q +P+AADILRKEPE ETF+R+ IT  E PSPDE+EAY VLQ+CLE+R+     E++
Sbjct:   28 HRKTLDQLLRFARSLDRDHRRRNRHLLDADDDDDDDPPRDHDRR----------------------TTLP------------------------IPPGLPPLHTGREGKPIISPASTKRVGPLVRPTTPRSPVPTVSAFETIEDSDDDDENIAPDAKNNAVSLLTNGTIGSDPLPGKASQNGDTKPVPSTNMIRSQSATGSLHGAQHNPVAADILRKEPEHETFSRINITAVETPSPDEIEAYKVLQKCLELREKYMFREEV 243          
The following BLAST results are available for this feature:
BLAST of DY262781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
AMPD_ARATH2.315e-5750.60AMP deaminase OS=Arabidopsis thaliana GN=AMPD PE=1... [more]
AMPD_ORYSJ3.192e-3940.08Probable AMP deaminase OS=Oryza sativa subsp. japo... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA100DG04RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262781 ID=DY262781; Name=DY262781; organism=Citrus clementina; type=EST; length=1157bp
CTCCGCTCAGAAATAACACATAACAACGATAATATTCACTCACCCGTAGT
GACTCTTATTTTTCTTTTCGATTGTTTTAATCTTTGTTGCCGAAACTTCT
AGGAAATGGACGCGTATACACTGCATCTGGCGATGGCGGCGTTGGTAGGA
GCGTCGGTGGTGGCGGTATCGGCGTATTACATGCACAGGAAAACCCTAAC
TCAGTTACTGGAGTTTGCGAAATCAGTGGAGAGAGAGCGAGACGATAACT
CCGACGCAGCCGAATCGCCGCACAATGTTAAGAGGCACGGCTGCGCGGCG
GCTCGGCGCTGCTCTTCCAGGAGGAAGGGAAGCGGATACTACCGGCGCTG
CTCGGCTTCGTTGCCGGACGTAACGGCCATTTCTGGTCATGCGGTTGACG
GTGAGGAGAGGCGCAACGGTCCGCTTCACGTTGATGGAATTCCCGCCGGG
CTTCCCAGGCTTCATACGTTGCCTGAAGGGAAATCTGCTGGGCATGCAAG
TTCAACCAAACGGGCTGGAAACCTTATCAGGCCAACTTCCCCAAAGTCCC
CGGTTGCTAGTGCCTTTGAGAGTGTAGAAGGATCAGATGAAGAGGATAAT
ATGACTGATAGTTCAAAATTGGACACCACATATCTGCTCACCAATGGAAA
TGCTGGCCCAAATTTACCAGACCACATGAATGTTAATGCAGAGGCTATAG
CTGCTTCAAGTATGATTCGATCTCATAGTGTATCCGGTGACCTGCATGGG
GTTCAGCCTGATCCTATTGCTGCAGATATTCTGAGGAAAGAGCCAGAGCA
AGAAACTTTTGCGCGACTTCAGATTACCCCTAAAGAGGTGCCATCACCTG
ATGAAATGGAGGCCTATGTGGTTCTTCAAGAATGTCTTGAAATGCGGAAA
AATATTTATTCAGAAGAACAGTTGCTCCATGGGAGAAAGAATGATTTCCG
ATCCTATTACTCCCAAGGCCAATCCCGATCCCTTTTATTATGCTCCTGTG
GGAAAGTCTGATTCTCATTTTTAAGATGCAAAAGGGAGTTATTCCTGGTT
ATCCCCACCAAAAAATTCAAAAAAAAAAGCTAAACCCCGTTGCCGAAGGC
AACAACCTTTTTTTCCCTGACCCGGCCTCCCATTCCTTTCAGTTTTTTGT
CTTGGGG
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