DY262787

Overview
NameDY262787
Unique NameDY262787
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1171
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262787_ssr124 microsatellite DY262787_ssr124:124..135. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of DY262787 vs. ExPASy Swiss-Prot
Match: PP365_ARATH (Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.552e-57
Identity = 152/347 (43.80%), Postives = 182/347 (52.45%), Query Frame = 2 
Query:   11 MDN---ILSLSAPHFXXXXXXXXXXXXXXXXXXSLSFSLKQXXXXXXXXXXXH-NLHRPPKS-------SLPTPSKIPKNPLK-NLLNSATTHVPSPPXXXXXXXXXXXXXXXXXXXXXXXXXAVEQ---------LQETQSQGNDEIPDXXXXXXXXXXXXXXXXTEFRQEGKIFVGNLPNWIKKHQVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNRAEVRARWVAGNNGEE-----FRSTWHKEREWHRREFRKAVETQPEKLAGCC*CF*EIKKPSRRKFGLMVNYNARRRDMHRARQIFEK 973
            MDN   +LSLSAPHF                  S+SFSLKQ             +L RP KS       S P+P   PK PLK N L   T      P                          +           ++ET +Q  DE                    EFRQEGKIFVGNLP WIKK +  EFFRQFGPI+NVILIKG++  EKN GFGF+IY   AAEKSAMKAVEFDGVEFHGR+LTVKLDDG+RLK +AE R RWV    GEE      +S+WH+ERE  R+  ++ ++T  +        F +I KPSR +FGLMV +  RR DMHRAR+ FE+
Sbjct:    1 MDNGGSVLSLSAPHFPYSATILRRHSPVA----SISFSLKQPPPQPPEPPESPPDLRRPEKSIGSSSSSSSPSPIPSPKTPLKINPLKGLTNRSSVSPLVQSEVSSKVSSFGSSLASKLRLSSKLSPPPPPPPPPPVEET-TQFRDEFRSDTKPPEEETRNPQQ---EFRQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIY---AAEKSAMKAVEFDGVEFHGRILTVKLDDGKRLKTKAEQRVRWV--EEGEEDTKMSNKSSWHQEREGSRKSLQRILDTNGDNWQAVISAFEKISKPSRTEFGLMVKFYGRRGDMHRARETFER 334
The following BLAST results are available for this feature:
BLAST of DY262787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PP365_ARATH1.552e-5743.80Pentatricopeptide repeat-containing protein At5g04... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA100DG11RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262787 ID=DY262787; Name=DY262787; organism=Citrus clementina; type=EST; length=1171bp
TTTCTCGTAAATGGATAACATCTTGTCACTCTCTGCTCCACATTTCCCTC
ACACCCCCGCGACGCTCCTCACCCATAAACCCCACCACCCCACCACCACT
TCCCTCTCTTTCTCCCTGAAACAGCCGCCGCCGCCATCCCCAACACCACC
GGAACCGCACAATCTCCACCGGCCCCCCAAATCCTCTCTGCCAACCCCCA
GCAAAATCCCCAAAAACCCCTTAAAAAACCTCCTAAATTCCGCCACCACC
CATGTCCCCTCCCCTCCTTCTCATTCTCTCTCCGCCAAACTCCGCCTCTC
CAGCAAACTCTCCCCGCCTCCTCCTCCACCTCCGCCACCGCCGGCAGTAG
AACAACTTCAAGAAACCCAAAGTCAAGGAAATGATGAAATCCCTGATGCT
GAAAATTCATCTCCTTCTTCGTCTTTGGCTGCTTCTCAAGAAGAAACAGA
GTTCCGCCAAGAGGGGAAGATTTTCGTGGGAAATTTACCCAACTGGATTA
AGAAGCACCAGGTCATGGAATTCTTTCGCCAGTTCGGGCCCATAAAGAAT
GTGATTTTAATCAAAGGGTATAATAATTTCGAGAAGAATGTTGGGTTTGG
GTTTGTGATATACGATGGTCCTGCGGCAGAGAAGTCTGCGATGAAAGCTG
TGGAGTTTGACGGGGTTGAGTTTCACGGGAGAGTGCTGACTGTGAAGCTT
GACGATGGAAGAAGATTGAAGAACAGGGCGGAGGTGCGAGCGCGGTGGGT
GGCGGGCAATAATGGAGAGGAATTTAGGTCCACATGGCACAAGGAGAGAG
AGTGGCACAGGAGGGAGTTTCGAAAGGCCGTGGAGACACAACCTGAGAAA
TTGGCAGGCTGTTGTTAGTGCTTTTGAGAGATTAAAAAGCCTTCAAGAAG
AAAGTTTGGGTTGATGGTGAACTATAATGCAAGACGAAGGGACATGCATC
GTGCTCGTCAAATTTTTGAAAAATGCGAGCAAGGGAAATAAAACAAATTT
TCATGGCCACACAAACCTATTCATGCTTAAGCAGTTGGGTCGGGAAATGG
AAAAAACTTTATCTTTGGGTAAGGAAAATGAAAAAAAAAGGCACCCAAAA
TAAATTGGGGGACTTAAAATAAAAAATTGGGGAAGGATTTGCTAAAAAGG
GGGGAATGCGTAAACCTGGCA
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