DY262788

Overview
NameDY262788
Unique NameDY262788
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1109
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262788_ssr339 microsatellite DY262788_ssr339:339..350. BLAST: Citrus ESTs to Prunus persica proteins V1
DY262788_ssr75 microsatellite DY262788_ssr75:75..90. BLAST: Citrus ESTs to Prunus persica proteins V1
DY262788_ssr117 microsatellite DY262788_ssr117:117..128. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY262788 vs. ExPASy Swiss-Prot
Match: S2539_BOVIN (Solute carrier family 25 member 39 OS=Bos taurus GN=SLC25A39 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 2.579e-14
Identity = 62/195 (31.79%), Postives = 86/195 (44.10%), Query Frame = 3
Query:  522 PLDVAKTRLQAQAAGVPYEGL--CRTASFESNMMLSDMRNSPSCTCAVPGT-EPAPEC-------------NRYKGTLDLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDGFRNLMENFTTGNAPMLTPYVPLVAGSVARSLACISRYPIKLARTRMQA--------FTGTQSGVSPPEWGKNWLVVSP 1034
            PLDV K RLQ+Q   V  E +   R  S     + S +R++  C     G  EP   C              R+ GT+D F K+VR EG   LW G  A+L ++VP    Y   YD     ++ F  G A     Y P+VAG++AR        P++L RT++QA         T  ++ V+   W   WL   P
Sbjct:   31 PLDVVKVRLQSQRPSVASELMPPSRLWSLSYAKLPSSLRSTGKCLLYCNGVLEPLYLCPNGARCATWFQDPTRFTGTMDAFVKIVRHEGTRTLWSGLPATLVMTVPATAAYFTAYD----QLKAFLCGRALTSDLYAPMVAGALARLGTVTVISPLELVRTKLQAQHLSYRELGTCVRAAVAQGGWRSLWLGWGP 221          
BLAST of DY262788 vs. ExPASy Swiss-Prot
Match: S2540_HUMAN (Solute carrier family 25 member 40 OS=Homo sapiens GN=SLC25A40 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 4.399e-14
Identity = 54/150 (36.00%), Postives = 77/150 (51.33%), Query Frame = 3
Query:  522 PLDVAKTRLQAQAAGVPYEGLCRTASFESNMMLSDMRNSPSCTCAVPGTEP-APECNRYKGTLDLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDGFRNLMENFTTGNAPMLTPYVPLVAGSVARSLACISRYPIKLARTRMQA 968
            PLDV K RLQAQ   +P +G C   S   N ++  +     C C   G +    +   ++GTLD F+K++R EG   LW G   +L ++VP   IY  CYD    L+ +    N       +P+VAG VAR  A     P++L RT+MQ+
Sbjct:   35 PLDVVKIRLQAQNNPLP-KGKCFVYS---NGLMDHL-----CVCEEGGNKLWYKKPGNFQGTLDAFFKIIRNEGIKSLWSGLPPTLVMAVPATVIYFTCYDQLSALLRSKLGENETC----IPIVAGIVARFGAVTVISPLELIRTKMQS 171          
BLAST of DY262788 vs. ExPASy Swiss-Prot
Match: S2539_HUMAN (Solute carrier family 25 member 39 OS=Homo sapiens GN=SLC25A39 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.493e-14
Identity = 55/165 (33.33%), Postives = 78/165 (47.27%), Query Frame = 3
Query:  522 PLDVAKTRLQAQAAGVPYEGL--CRTASFESNMMLSDMRNSPSCTCAVPGT-EPAPEC-------------NRYKGTLDLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDGFRNLMENFTTGNAPMLTPYVPLVAGSVARSLACISRYPIKLARTRMQA 968
            PLDV K RLQ+Q   +  E +   R  S     + S ++++  C     G  EP   C              R+ GT+D F K+VR EG   LW G  A+L ++VP   IY   YD     ++ F  G A     Y P+VAG++AR        P++L RT++QA
Sbjct:   31 PLDVVKVRLQSQRPSMASELMPSSRLWSLSYTKLPSSLQSTGKCLLYCNGVLEPLYLCPNGARCATWFQDPTRFTGTMDAFVKIVRHEGTRTLWSGLPATLVMTVPATAIYFTAYD----QLKAFLCGRALTSDLYAPMVAGALARLGTVTVISPLELMRTKLQA 191          

HSP 2 Score: 21.1718 bits (43), Expect = 5.493e-14
Identity = 11/23 (47.83%), Postives = 14/23 (60.87%), Query Frame = 2
Query: 1040 RTKLLSKFQKYRNLGNGVGTNLA 1108
            RTKL ++   YR LG  V T +A
Sbjct:  186 RTKLQAQHVSYRELGACVRTAVA 208          
BLAST of DY262788 vs. ExPASy Swiss-Prot
Match: S2539_MOUSE (Solute carrier family 25 member 39 OS=Mus musculus GN=Slc25a39 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.671e-13
Identity = 61/195 (31.28%), Postives = 83/195 (42.56%), Query Frame = 3
Query:  522 PLDVAKTRLQAQAAGVPYEGLC--RTASFESNMMLSDMRNSPSCTCAVPGT-EPAPEC-------------NRYKGTLDLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDGFRNLMENFTTGNAPMLTPYVPLVAGSVARSLACISRYPIKLARTRMQA--------FTGTQSGVSPPEWGKNWLVVSP 1034
            PLDV K RLQ+Q      E     R  S       S +++   C     G  EP   C              R+ GTLD F K+VR EG   LW G  A+L ++VP   IY   YD     ++ F  G +     Y P+VAG++AR        P++L RT++QA         +  Q+ V+   W   WL   P
Sbjct:   31 PLDVVKVRLQSQRPSATSELTTPSRFWSLSYTKSSSALQSPGKCLLYCNGVLEPLYLCPNGTRCATWFQDPTRFTGTLDAFVKIVRHEGTRTLWSGLPATLVMTVPATAIYFTAYD----QLKAFLCGQSLTSDLYAPMVAGALARMGTVTVVSPLELVRTKLQAQHVSYRELASSVQAAVTQGGWRSLWLGWGP 221          
BLAST of DY262788 vs. ExPASy Swiss-Prot
Match: S2540_BOVIN (Solute carrier family 25 member 40 OS=Bos taurus GN=SLC25A40 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.183e-13
Identity = 53/150 (35.33%), Postives = 74/150 (49.33%), Query Frame = 3
Query:  522 PLDVAKTRLQAQAAGVPYEGLCRTASFESNMMLSDMRNSPSCTCAVPGTEP-APECNRYKGTLDLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDGFRNLMENFTTGNAPMLTPYVPLVAGSVARSLACISRYPIKLARTRMQA 968
            P DV K RLQAQ    P +G C      SN ++  +     C C   G +    +   ++GTLD F K++R EG   LW G   +L ++VP   IY  CYD    L+ +    N       +P+VAG VAR  A     P++L RT+MQ+
Sbjct:   35 PFDVVKIRLQAQNNPFP-KGKC---FLYSNGLMDHL-----CVCEEEGNKAWYKKPGHFQGTLDAFLKIIRNEGIKSLWSGLPPTLVMAVPATVIYFTCYDQLTALLRSKLGENESR----IPIVAGIVARLGAVTVISPLELIRTKMQS 171          
BLAST of DY262788 vs. ExPASy Swiss-Prot
Match: S2539_RAT (Solute carrier family 25 member 39 OS=Rattus norvegicus GN=Slc25a39 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.851e-13
Identity = 62/195 (31.79%), Postives = 83/195 (42.56%), Query Frame = 3
Query:  522 PLDVAKTRLQAQAAGVPYEGLC--RTASFESNMMLSDMRNSPSCTCAVPGT-EPAPEC-------------NRYKGTLDLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDGFRNLMENFTTGNAPMLTPYVPLVAGSVARSLACISRYPIKLARTRMQA--------FTGTQSGVSPPEWGKNWLVVSP 1034
            PLDV K RLQ+Q   V  E     R  S       S +++   C     G  EP   C              R+ GTLD F K+VR EG   LW G  A+L ++VP   IY   YD     ++ F  G +     Y P+VAG++AR        P++L RT++QA            Q+ V+   W   WL   P
Sbjct:   31 PLDVVKVRLQSQRPTVASELTTPSRFWSLSYTKSPSTLQSPGKCLLYCNGVLEPLYLCPNGTRCATWFQDPTRFTGTLDAFVKIVRHEGTRTLWSGLPATLVMTVPATAIYFTAYD----QLKAFLCGQSLTSDLYAPMVAGALARMGTVTVVSPLELVRTKLQAQHVSYRELAACVQAAVAQGGWRSLWLGWGP 221          
BLAST of DY262788 vs. ExPASy Swiss-Prot
Match: S2540_RAT (Solute carrier family 25 member 40 OS=Rattus norvegicus GN=Slc25a40 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 2.414e-12
Identity = 53/152 (34.87%), Postives = 73/152 (48.03%), Query Frame = 3
Query:  522 PLDVAKTRLQAQAAGVPYEGLCRTASFESNMMLSDMRNSPSCTCAVPGTEP-APECNRYKGTLDLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDGFRNLMENFTTGNAPMLTPYVPLVAGSVARSLACISRYPIKLARTRMQAFT 974
            PLDV K RLQAQ    P +G C      SN ++  +     C C     +    +   + GTLD F K+VR EG   LW G   +L ++VP   IY  CY+     ++     N       +P+VAG VAR  A     P++L RT+MQ+ T
Sbjct:   36 PLDVVKIRLQAQNNPFP-KGKC---FLYSNGLMDHI-----CICEEESKKAWYKKPGNFHGTLDAFLKIVRNEGIKSLWSGLPPTLVMAVPATVIYFTCYEQLSTFLKTKLGENETR----IPIVAGIVARFGAVTMISPLELIRTKMQSKT 174          
BLAST of DY262788 vs. ExPASy Swiss-Prot
Match: S2540_MOUSE (Solute carrier family 25 member 40 OS=Mus musculus GN=Slc25a40 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 9.172e-12
Identity = 50/150 (33.33%), Postives = 73/150 (48.67%), Query Frame = 3
Query:  522 PLDVAKTRLQAQAAGVPYEGLCRTASFESNMMLSDMRNSPSCTCAVPGTEP-APECNRYKGTLDLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDGFRNLMENFTTGNAPMLTPYVPLVAGSVARSLACISRYPIKLARTRMQA 968
            PLDV K RLQAQ    P +G C      SN ++  M     C C     +    +   ++GTLD F K++R EG   LW G   +L +++P   IY  CY+     ++     N       +P+VAG VAR  A     P++L RT++Q+
Sbjct:   36 PLDVVKIRLQAQNNPFP-KGKC---FLYSNGLMDHM-----CVCEEESKKAWYKKPGNFRGTLDAFLKILRNEGIKSLWSGLPPTLVMAIPATVIYFTCYEQLSAFLKTKLGENETR----IPIVAGVVARFGAVTVISPLELIRTKVQS 172          
BLAST of DY262788 vs. ExPASy Swiss-Prot
Match: S2540_DANRE (Solute carrier family 25 member 40 OS=Danio rerio GN=slc25a40 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.564e-11
Identity = 54/152 (35.53%), Postives = 75/152 (49.34%), Query Frame = 3
Query:  522 PLDVAKTRLQAQAAGVPYEGLCRTASFESNMMLSDMRNSPSCTCAVPGTE---PAPECNRYKGTLDLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDGFRNLMENFTTGNAPMLTPYVPLVAGSVARSLACISRYPIKLARTRMQA 968
            PLDV K RLQAQ    P +G C       N ++  +     C C    T+    AP    + GTLD F K++R EG   LW G   +L ++VP   IY  CYD    L++    G+   L    PL AG++AR  +     P++L RT+MQ+
Sbjct:   36 PLDVVKIRLQAQKNPFP-KGKCFVYC---NGLMDHI-----CVCENGNTKVWYKAP--GHFSGTLDAFLKIIRMEGIRSLWSGLPPTLIMAVPATVIYFTCYDQLFALLK-LKMGDRSDL---APLFAGAIARVGSATVISPLELIRTKMQS 172          
BLAST of DY262788 vs. ExPASy Swiss-Prot
Match: S2539_DANRE (Solute carrier family 25 member 39 OS=Danio rerio GN=SLC25A39 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.945e-11
Identity = 50/165 (30.30%), Postives = 76/165 (46.06%), Query Frame = 3
Query:  522 PLDVAKTRLQAQ---------AAGVPYEGLCRTASFESNMMLSDM-------RNSPSCTCAVPGTEPAPECNRYKGTLDLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDGFRNLMENFTTGNAPMLTPYVPLVAGSVARSLACISRYPIKLARTRMQA 968
            PLDV K RLQAQ         A   P+  + R + ++  +  + +       +N  SC+     +        + GTLD F K+   EG   LW G   +L ++VP   IY  CYD  R    +F   +      ++PL+AG +AR  A     P++L RT+MQ+
Sbjct:   35 PLDVVKIRLQAQQTPLFQAIAAESRPWFRVTRPSKWKCFLYCNGLMDHVYVCQNMSSCSNLYKTS------THFSGTLDAFVKITHNEGLRSLWSGLPPTLVMAVPATVIYFTCYDQLR----DFLCYSMGYHGDHIPLIAGGLARLGAVSVISPLELVRTKMQS 189          
The following BLAST results are available for this feature:
BLAST of DY262788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
S2539_BOVIN2.579e-1431.79Solute carrier family 25 member 39 OS=Bos taurus G... [more]
S2540_HUMAN4.399e-1436.00Solute carrier family 25 member 40 OS=Homo sapiens... [more]
S2539_HUMAN5.493e-1433.33Solute carrier family 25 member 39 OS=Homo sapiens... [more]
S2539_MOUSE1.671e-1331.28Solute carrier family 25 member 39 OS=Mus musculus... [more]
S2540_BOVIN2.183e-1335.33Solute carrier family 25 member 40 OS=Bos taurus G... [more]
S2539_RAT2.851e-1331.79Solute carrier family 25 member 39 OS=Rattus norve... [more]
S2540_RAT2.414e-1234.87Solute carrier family 25 member 40 OS=Rattus norve... [more]
S2540_MOUSE9.172e-1233.33Solute carrier family 25 member 40 OS=Mus musculus... [more]
S2540_DANRE1.564e-1135.53Solute carrier family 25 member 40 OS=Danio rerio ... [more]
S2539_DANRE5.945e-1130.30Solute carrier family 25 member 39 OS=Danio rerio ... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA100DG12RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262788 ID=DY262788; Name=DY262788; organism=Citrus clementina; type=EST; length=1109bp
CGTCAGACAACGATCAGTTACTTGGCGCCATCACTTACACGCCACCGCAC
CGCACCAATCGCTTTAGGCCCTCCTCTTTCTTTCTTTCTTTCCCATGCAA
ATTAATTGGAAAGACCTAGATAGATAGAATATACTAAAACCAACCAAAAT
TTGACTTTAAAAAAAAAAAAAAAAAAAACTAATGTTCAAAGGATTACAAA
CCTCACTACCTTATTGTTTCTTTTGATTCGCATTTCGAGTTCTGCTGTTT
TGGTATATGCAAATTGTTTGGAATTTTACAAGTAAACAAGAGGGGAATGG
TGGTGGGCTCAAGGGTGAGTGTGCCTTCATGGATGAGCGCGGCGGCGGCG
ACTAGGGTTGATTTGGAGGGAAGCGTTTCGTCTGTGACAGTATCATCAGA
GACTTCGTCTAAAGAGGAAGCTTTACGGCATTCAGAAGCCATAAATGATT
TCAGTTTGGGGTTTGCAGAAAGGGCTTTCTCTGCTGCCGGCGCTGCTATC
GTTTCTGCCGTTATTGTTAATCCTCTCGATGTCGCTAAGACAAGGTTGCA
AGCCCAGGCTGCTGGCGTCCCTTATGAGGGTCTATGTCGTACAGCATCTT
TTGAAAGTAACATGATGCTTTCAGATATGAGAAATTCTCCATCATGCACA
TGTGCAGTTCCAGGCACAGAACCAGCTCCAGAATGTAATCGATATAAAGG
AACACTGGATCTTTTCTACAAAGTCGTACGCCAGGAGGGATTTGCCCGAC
TATGGAGAGGCACTTATGCAAGTTTAGCATTGTCTGTGCCAACAGTGGGA
ATTTACCTTCCTTGTTATGACGGTTTTCGCAATTTGATGGAAAATTTCAC
CACTGGCAATGCTCCCATGTTGACACCATATGTCCCCCTAGTTGCTGGGT
CTGTTGCACGTTCGTTAGCATGTATTAGTAGATACCCCATCAAATTGGCA
AGGACACGGATGCAGGCATTCACTGGAACACAGTCTGGTGTGAGCCCTCC
GGAGTGGGGAAAAAACTGGTTGGTGGTGTCACCCGGTCAAGAACCAAATT
ACTCTCAAAGTTTCAAAAATACCGGAACTTGGGGAATGGGGTTGGGACCA
ACTTGGCCC
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